John H Morris

scNetViz: from single cells to networks using Cytoscape

Elaine C Meng, Alexander R Pico, Krishna Choudhary, 2021, F1000Research.

The Cytoscape Automation app article collection

Benno Schwikowski, Gary D Bader, Trey Ideker, 2018, F1000Research.

setsApp: Set operations for Cytoscape Nodes and Edges

Mario Albrecht, Thomas E Ferrin, Allan Wu, 2014, F1000Research.

The Cytoscape app article collection

Benno Schwikowski, Gary D Bader, Trey Ideker, 2014, F1000Research.

Evaluation of methods to assign cell type labels to cell clusters from single-cell RNA-sequencing data

Gary D Bader, Alexander R. Pico, Elaine C Meng, 2019, bioRxiv.