Ion I. Mandoiu

发表

Guest Editors’ Introduction to the Special Section on Bioinformatics Research and Applications

Giri Narasimhan, Ion I. Mandoiu, Yi Pan, 2019, TCBB.

A new heuristic for rectilinear Steiner trees

Ion I. Mandoiu, Vijay V. Vazirani, Joseph L. Ganley, 1999, 1999 IEEE/ACM International Conference on Computer-Aided Design. Digest of Technical Papers (Cat. No.99CH37051).

A primal-dual schema based approximation algorithm for the element connectivity problem

David P. Williamson, Ion I. Mandoiu, Vijay V. Vazirani, 2002, SODA '99.

Floorplan evaluation with timing-driven global wireplanning, pin assignment, and buffer/wire sizing

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2002, Proceedings of ASP-DAC/VLSI Design 2002. 7th Asia and South Pacific Design Automation Conference and 15h International Conference on VLSI Design.

Layout-aware scan chain synthesis for improved path delay fault coverage

Puneet Gupta, Andrew B. Kahng, Ion I. Mandoiu, 2003, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems.

12 Grand Challenges in Single-Cell Data Science

Fabian J. Theis, Marcel J. T. Reinders, Jan O. Korbel, 2019, PeerJ Prepr..

Poster: Accurate scaffolding of large genomes using integer programming and Non-Serial Dynamic Programming

Ion I. Mandoiu, Alex Zelikovsky, James Lindsay, 2012, 2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Minimum-buffered routing of non-critical nets for slew rate and reliability control

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2001, IEEE/ACM International Conference on Computer Aided Design. ICCAD 2001. IEEE/ACM Digest of Technical Papers (Cat. No.01CH37281).

SC1: A Tool for Interactive Web-Based Single Cell RNA-Seq Data Analysis

Ion I. Mandoiu, Marmar Moussa, I. Măndoiu, 2020, bioRxiv.

Reference assisted nucleic acid sequence reconstruction from mass spectrometry data

Ion I. Mandoiu, Alex Zelikovsky, Gabriel Ilie, 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Improved Tag Set Design and Multiplexing Algorithms for Universal Arrays

Ion I. Mandoiu, Claudia Prajescu, Dragos Trinca, 2005, International Conference on Computational Science.

Provably good global buffering by generalized multiterminalmulticommodity flow approximation

Andrew B. Kahng, Ion I. Mandoiu, Feodor F. Dragan, 2002, IEEE Trans. Comput. Aided Des. Integr. Circuits Syst..

SC1: A web-based single cell RNA-seq analysis pipeline

Ion I. Mandoiu, Marmar Moussa, I. Măndoiu, 2018, 2018 IEEE 8th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Fast bootstrapping‐based estimation of confidence intervals of expression levels and differential expression from RNA‐Seq data

Igor Mandric, Ion I. Mandoiu, Alex Zelikovsky, 2017, Bioinform..

Workshop: Bioinformatics methods for reconstruction of Infectious Bronchitis Virus quasispecies from next generation sequencing data

Rachel J. O'Neill, Craig Obergfell, Ion I. Mandoiu, 2012, 2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

ACM-BCB 2018 Computational Advances in Molecular Epidemiology (CAME) Chairs' Welcome

Ion I. Mandoiu, Pavel Skums, Alex Zelikovsky, 2018, BCB.

Message from the conference and the workshop chairs

Alexander Zelikovsky, Ion I. Mandoiu, Jiawei Han, 2007 .

Minimum Multicolored Subgraph Problem in Multiplex PCR Primer Set Selection and Population Haplotyping

Alexander Russell, Mohammad Taghi Hajiaghayi, Ion I. Mandoiu, 2006, International Conference on Computational Science.

DNA-BAR: distinguisher selection for DNA barcoding

Kishori M. Konwar, Ion I. Mandoiu, Bhaskar DasGupta, 2005, Bioinform..

Introduction to the Special Section on Computational Nanobioscience

Alexander Zelikovsky, Yi Pan, Ion I. Mandoiu, 2007 .

Scalable genome scaffolding using integer linear programming

Ion I. Mandoiu, Alex Zelikovsky, James Lindsay, 2012, BCB.

Locality Sensitive Imputation for Single-Cell RNA-Seq Data

Ion I. Mandoiu, Marmar Moussa, I. Măndoiu, 2018, bioRxiv.

In Silico Enzymatic Synthesis of a 400 000 Compound Biochemical Database for Nontargeted Metabolomics

Ion I. Mandoiu, Dennis W. Hill, David F. Grant, 2013, J. Chem. Inf. Model..

Exact and Approximation Algorithms for DNA Tag Set Design

Ion I. Mandoiu, Dragos Trinca, 2005, CPM.

Improved Approximation Algorithms for the Quality of Service Multicast Tree Problem

Marek Karpinski, Ion I. Mandoiu, Alex Zelikovsky, 2005, Algorithmica.

Primer Selection Methods for Detection of Genomic Inversions and Deletions via PAMP

Ion I. Mandoiu, Bhaskar DasGupta, Jin Jun, 2008, APBC.

Metabolic Pathway Predictions for Metabolomics: A Molecular Structure Matching Approach

Sanguthevar Rajasekaran, Ion I. Mandoiu, David F. Grant, 2015, J. Chem. Inf. Model..

Estimating Enzyme Participation in Metabolic Pathways for Microbial Communities from RNA-seq Data

Ion I. Mandoiu, Bogdan Pasaniuc, Alex Zelikovsky, 2020, ISBRA.

Locality Sensitive Imputation for Single-Cell RNA-Seq Data

Ion I. Mandoiu, Marmar Moussa, 2018 .

kGEM: An EM-based algorithm for local reconstruction of viral quasispecies

Ion I. Mandoiu, Pavel Skums, Alex Zelikovsky, 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications

Robert W. Harrison, Ion I. Mandoiu, Alex Zelikovsky, 2017, TCBB.

Identification of cancer-specific motifs in mimotope profiles of serum antibody repertoire

Ion I. Mandoiu, Alex Zelikovsky, Ekaterina Nenastyeva, 2015, ICCABS.

Bioinformatics Algorithms: Techniques and Applications

Alexander Zelikovsky, Ion I. Mandoiu, A. Zelikovsky, 2008 .

Imputation-Based Local Ancestry Inference in Admixed Populations

Ion I. Mandoiu, Justin Kennedy, Bogdan Pasaniuc, 2009, ISBRA.

Approximation Algorithms for Minimum PCR Primer Set Selection with Amplification Length and Uniqueness Constraints

Kishori M. Konwar, Alexander Russell, Ion I. Mandoiu, 2004, ArXiv.

The Birth of New Genes by RNA- and DNA-Mediated Duplication during Mammalian Evolution

Ion I. Mandoiu, Jin Jun, Paul Ryvkin, 2009, J. Comput. Biol..

Estimation of alternative splicing isoform frequencies from RNA-Seq data

Ion I. Mandoiu, Alex Zelikovsky, Serghei Mangul, 2010, Algorithms for Molecular Biology.

Genotype and Haplotype Reconstruction from Low-Coverage Short Sequencing Reads

Ion I. Mandoiu, 2009, BICoB.

Selected Papers from the 1st ACIS International Workshop on Self-Assembling Wireless Networks

Ion I. Mandoiu, Gruia Calinescu, Alex Zelikovsky, 2007, J. Univers. Comput. Sci..

On the skew-bounded minimum-buffer routing tree problem

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2003, IEEE Trans. Comput. Aided Des. Integr. Circuits Syst..

Workshop: Novel transcript reconstruction from paired-end RNA-Seq reads using fragment length distribution

Ion I. Mandoiu, Alex Zelikovsky, Serghei Mangul, 2012, 2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

The Tenth International Workshop on System-Level Interconnect Prediction (SLIP 2008), Newcastle, UK, April 5-8, 2008, Proceedings

Ion I. Mandoiu, Andrew Kennings, 2008, SLIP.

Engineering a scalable placement heuristic for DNA probe arrays

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2003, RECOMB '03.

Accurate Estimation of Gene Expression Levels from DGE Sequencing Data

Ion I. Mandoiu, Marius Nicolae, 2011, ISBRA.

Resist heating dependence on subfield scheduling in 50-kV electron beam maskmaking

Andrew B. Kahng, Ion I. Mandoiu, Sergey V. Babin, 2003, Photomask Japan.

Practical Approximations of Steiner Trees in Uniform Orientation Metrics

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2018, Handbook of Approximation Algorithms and Metaheuristics.

Multi-project reticle floorplanning and wafer dicing

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2004, ISPD '04.

The Ninth International Workshop on System-Level Interconnect Prediction (SLIP 2007), Austin, Texas, USA, March 17-18, 2007, Proceedings

Ion I. Mandoiu, Andrew Kennings, 2007, SLIP.

Improved algorithms for multiplex PCR primer set selection with amplification length constraints

Kishori M. Konwar, Alexander Russell, Ion I. Mandoiu, 2005, APBC.

TreeFix-TP: Phylogenetic Error-Correction for Infectious Disease Transmission Network Inference

Ion I. Mandoiu, Mukul S. Bansal, Chengchen Zhang, 2019, bioRxiv.

Guest Editors’ Introduction to the Special Section on Bioinformatics Research and Applications

Yi Pan, Ion I. Mandoiu, Alex Zelikovsky, 2019, TCBB.

Estimating the Relative Contributions of New Genes from Retrotransposition and Segmental Duplication Events during Mammalian Evolution

Ion I. Mandoiu, Jin Jun, Paul Ryvkin, 2008, RECOMB-CG.

Viral quasispecies reconstruction from amplicon 454 pyrosequencing reads

Ion I. Mandoiu, Pavel Skums, Alex Zelikovsky, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

Practical approximation algorithms for zero- and bounded-skew trees

Ion I. Mandoiu, Alex Zelikovsky, 2001, SODA '01.

Scalable Heuristics for Design of DNA Probe Arrays

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2004, J. Comput. Biol..

Estimation of wirelength reduction for λ-geometry vs. manhattan placement and routing

Andrew B. Kahng, Ion I. Mandoiu, Chung-Kuan Cheng, 2003, SLIP '03.

Towards whole transcriptome deconvolution using single-cell data

Ion I. Mandoiu, James Lindsay, Craig E. Nelson, 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Multicommodity Flow Algorithms for Buffered Global Routing pdf

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2007, Handbook of Approximation Algorithms and Metaheuristics.

The Y architecture for on-chip interconnect: analysis and methodology

Andrew B. Kahng, Ion I. Mandoiu, Chung-Kuan Cheng, 2005, IEEE Trans. Comput. Aided Des. Integr. Circuits Syst..

Statistical Mitogenome Assembly with Repeats

Ion I. Mandoiu, Fahad Alqahtani, I. Măndoiu, 2018, 2018 IEEE 8th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling

Ion I. Mandoiu, Pavel Skums, Zoya Dimitrova, 2015, Bioinform..

Towards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data

Ion I. Mandoiu, Pramod K. Srivastava, Jorge Duitama, 2011, ICCABS.

Pairing T Cell Receptor α and β sequences using pooling and min-cost flows

Ion I. Mandoiu, Tyler Daddio, I. Măndoiu, 2016, ICCABS.

Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications

Yi Pan, Ion I. Mandoiu, Rajshekhar Sunderraman, 2009, IEEE ACM Trans. Comput. Biol. Bioinform..

TRIP: a method for novel transcript reconstruction from paired-end RNA-seq reads

Ion I. Mandoiu, Alex Zelikovsky, Dumitru Brinza, 2012, BMC Bioinformatics.

QoS Multimedia Multicast Routing

Ion I. Mandoiu, Alex Zelikovsky, Alexander Olshevsky, 2007, Handbook of Approximation Algorithms and Metaheuristics.

QoS Multimedia Multicast Routing.

Alexander Zelikovsky, Ion I. Mandoiu, Alex Olshevsky, 2007 .

Highly scalable algorithms for rectilinear and octilinear Steiner trees

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2003, ASP-DAC '03.

Minimum buffered routing with bounded capacitive load for slew rate and reliability control

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2003, IEEE Trans. Comput. Aided Des. Integr. Circuits Syst..

Power efficient range assignment in ad-hoc wireless networks

Ernst Althaus, Ion I. Mandoiu, Gruia Calinescu, 2003, 2003 IEEE Wireless Communications and Networking, 2003. WCNC 2003..

Poster: Empirical comparison of protocols for sequencing-based gene and isoform expression profiling

Ion I. Mandoiu, Marius Nicolae, 2011, 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Multicommodity Flow Algorithms for Buffered Global Routing

Alexander Zelikovsky, Ion I. Mandoiu, Andrew B. Kahng, 2007 .

Metabolic Analysis of Metatranscriptomic Data from Planktonic Communities

Igor Mandric, Ion I. Mandoiu, Alex Zelikovsky, 2017, ISBRA.

Workshop: Inference of allele specific expression levels from RNA-Seq data

Ion I. Mandoiu, Sahar Al Seesi, I. Măndoiu, 2012, 2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

GEDI: Scalable Algorithms for Genotype Error Detection and Imputation pdf

Ion I. Mandoiu, Justin Kennedy, Bogdan Pasaniuc, 2009, ArXiv.

Nontree routing for reliability and yield improvement [IC layout]

Andrew B. Kahng, Ion I. Mandoiu, Bao Liu, 2004, IEEE Trans. Comput. Aided Des. Integr. Circuits Syst..

Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity

Ion I. Mandoiu, Justin Kennedy, Bogdan Pasaniuc, 2007, WABI.

Transcriptome assembly and quantification from Ion Torrent RNA-Seq data

Ion I. Mandoiu, Alex Zelikovsky, Dumitru Brinza, 2013, ICCABS.

Efficient Algorithms for degenerate Primer Search

Sanguthevar Rajasekaran, Ion I. Mandoiu, Sudha Balla, 2007, Int. J. Found. Comput. Sci..

Optimizing pooling strategies for the massive next-generation sequencing of viral samples

Ion I. Mandoiu, Pavel Skums, Alex Zelikovsky, 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Power Efficient Range Assignment for Symmetric Connectivity in Static Ad Hoc Wireless Networks

Ernst Althaus, Ion I. Mandoiu, Gruia Calinescu, 2006, Wirel. Networks.

Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows

Ion I. Mandoiu, Pavel Skums, Alex Zelikovsky, 2013, BMC Bioinformatics.

Maximum Likelihood Estimation of Incomplete Genomic Spectrum from HTS Data

Ion I. Mandoiu, Alex Zelikovsky, Serghei Mangul, 2011, WABI.

Exact and Approximation Algorithms for DNA Tag Set Design

Ion I. Mandoiu, Dragos Trinca, 2006, J. Comput. Biol..

Practical Approximation Algorithms for Separable Packing Linear Programs

Andrew B. Kahng, Ion I. Mandoiu, Feodor F. Dragan, 2001, WADS.

Feature selection and classifier performance on diverse bio- logical datasets

Ion I. Mandoiu, Chih Lee, James Lindsay, 2014, BMC Bioinformatics.

Primal-dual algorithms for QoS multimedia multicast

Cristina G. Fernandes, Ion I. Mandoiu, Gruia Calinescu, 2003, GLOBECOM '03. IEEE Global Telecommunications Conference (IEEE Cat. No.03CH37489).

Selecting Forwarding Neighbors in Wireless Ad Hoc Networks

Ion I. Mandoiu, Peng-Jun Wan, Gruia Calinescu, 2004, Mob. Networks Appl..

Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications

Yi Pan, Ion I. Mandoiu, Alex Zelikovsky, 2008, TCBB.

Deterministic regression algorithm for transcriptome frequency estimation

Ion I. Mandoiu, Alex Zelikovsky, Alexander Artyomenko, 2014, 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Identification of cancer-specific motifs in mimotope profiles of serum antibody repertoire

Ion I. Mandoiu, Alex Zelikovsky, Yurij Ionov, 2015, 2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Symmetric Connectivity with Minimum Power Consumption in Radio Networks

Ion I. Mandoiu, Gruia Calinescu, Alex Zelikovsky, 2002, IFIP TCS.

Workshop: A maximum likelihood method for quasispecies spectrum assembly

Ion I. Mandoiu, Pavel Skums, Alex Zelikovsky, 2012, 2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Faster greedy algorithms for Multiple Degenerate Primer Selection

Sanguthevar Rajasekaran, Ion I. Mandoiu, Sudha Balla, 2008, 2008 8th IEEE International Conference on BioInformatics and BioEngineering.

High-Throughput SNP Genotyping by SBE/SBH

Ion I. Mandoiu, Claudia Prajescu, I. Măndoiu, 2005, IEEE Transactions on NanoBioscience.

Evaluation of placement techniques for DNA probe array layout

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2003, ICCAD-2003. International Conference on Computer Aided Design (IEEE Cat. No.03CH37486).

Poster: Scaffolding draft genomes using paired sequencing data

J. Zhang, Rachel J. O'Neill, Y. Wu, 2011, 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Improved Tag Set Design and Multiplexing Algorithms for Universal Arrays

Ion I. Mandoiu, Claudia Prajescu, Dragos Trinca, 2005, Trans. Comp. Sys. Biology.

Bioinformatics Research and Applications, Fourth International Symposium, ISBRA 2008, Atlanta, GA, USA, May 6-9, 2008. Proceedings

Alexander Zelikovsky, Ion I. Mandoiu, Raj Sunderraman, 2008, ISBRA.

The Y-Architecture for On-Chip Interconnect: Analysis and Methodology

Andrew B. Kahng, Ion I. Mandoiu, Chung-Kuan Cheng, 2003, ICCAD.

The 'Art of Trellis Decoding' Is Computationally Hardi - For Large Fields

Ion I. Mandoiu, Vijay V. Vazirani, Kamal Jain, 1998, IEEE Trans. Inf. Theory.

Border Length Minimization in DNA Array Design

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2002, WABI.

Workshop: The utility of next generation sequencing for genome scale studies

Rachel J. O'Neill, Ion I. Mandoiu, Thomas Heider, 2011, 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Proceedings of the 2008 international workshop on System level interconnect prediction

Ion I. Mandoiu, Andrew Kennings, 2007, SLIP 2008.

Highly Scalable Genotype Phasing by Entropy Minimization

Ion I. Mandoiu, Bogdan Pasaniuc, Alexander Gusev, 2006, 2006 International Conference of the IEEE Engineering in Medicine and Biology Society.

A note on the MST heuristic for bounded edge-length Steiner trees with minimum number of Steiner points

Ion I. Mandoiu, Alex Zelikovsky, 2000, Inf. Process. Lett..

Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity

Ion I. Mandoiu, Justin Kennedy, Bogdan Pasaniuc, 2007, WABI.

Selecting Forwarding Neighbors in Wireless Ad Hoc Networks

Ion I. Mandoiu, Peng-Jun Wan, Gruia Calinescu, 2001, DIALM '01.

Computer-Aided Optimization of DNA Array Design and Manufacturing

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2006, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems.

Yield-driven multi-project reticle design and wafer dicing

Alexander Zelikovsky, Andrew B. Kahng, Ion I. Mandoiu, 2005, SPIE Photomask Technology.

Highly scalable algorithms for robust string barcoding

Kishori M. Konwar, Ion I. Mandoiu, Bhaskar DasGupta, 2005, Int. J. Bioinform. Res. Appl..

Enhanced Design Flow and Optimizations for Multiproject Wafers

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2007, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems.

Estimation of viral population structure from amplicon-based reads

Ion I. Mandoiu, Pavel Skums, Alex Zelikovsky, 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Optimal Testing of Digital Microfluidic Biochips

Ion I. Mandoiu, Alex Zelikovsky, Bogdan Pasaniuc, 2011, INFORMS J. Comput..

BioSM: Metabolomics Tool for Identifying Endogenous Mammalian Biochemical Structures in Chemical Structure Space

Sanguthevar Rajasekaran, Ion I. Mandoiu, Dennis W. Hill, 2013, J. Chem. Inf. Model..

Monte-Carlo Regression algorithm for isoform frequency estimation from RNA-Seq data

Ion I. Mandoiu, Alex Zelikovsky, Serghei Mangul, 2013, 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

SMART: Statistical Mitogenome Assembly with Repeats

Ion I. Mandoiu, Fahad Alqahtani, I. Măndoiu, 2019, bioRxiv.

RNA-Seq based discovery and reconstruction of unannotated transcripts in partially annotated genomes

Ion I. Mandoiu, Alex Zelikovsky, Serghei Mangul, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

Auctions with Buyer Preferences

Andrew B. Kahng, Ion I. Mandoiu, Yu Chen, 2002, Information Systems: The e-Business Challenge.

Improved Approximation Algorithms for the Quality of Service Steiner Tree Problem

Marek Karpinski, Ion I. Mandoiu, Alex Zelikovsky, 2003, WADS.

Design flow enhancements for DNA arrays

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2003, Proceedings 21st International Conference on Computer Design.

Reconstructing viral quasispecies from NGS amplicon reads

Ion I. Mandoiu, Pavel Skums, Alex Zelikovsky, 2012, Silico Biol..

ILP-based maximum likelihood genome scaffolding

Ion I. Mandoiu, Alex Zelikovsky, James Lindsay, 2014, BMC Bioinformatics.

Poster: ViSpA: Viral spectrum assembling method

Ion I. Mandoiu, Alex Zelikovsky, Serghei Mangul, 2011, 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Bioinformatics Research and Applications, 5th International Symposium, ISBRA 2009, Fort Lauderdale, FL, USA, May 13-16, 2009, Proceedings

Yanqing Zhang, Giri Narasimhan, Ion I. Mandoiu, 2009, ISBRA.

The use of graph matching algorithms to identify biochemical substructures in synthetic chemical compounds: Application to metabolomics

Sanguthevar Rajasekaran, Reda A. Ammar, Ion I. Mandoiu, 2012, 2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Optimum Extensions of Prefix Codes

Ion I. Mandoiu, 1998, Inf. Process. Lett..

Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications

Ion I. Mandoiu, Jianxin Wang, Alex Zelikovsky, 2011, TCBB.

Layout-aware scan chain synthesis for improved path delay fault coverage

Puneet Gupta, Andrew B. Kahng, Ion I. Mandoiu, 2005, IEEE Trans. Comput. Aided Des. Integr. Circuits Syst..

Inferring viral quasispecies spectra from 454 pyrosequencing reads

Ion I. Mandoiu, Alex Zelikovsky, Serghei Mangul, 2011, BMC Bioinformatics.

Provably good global buffering using an available buffer block plan

Andrew B. Kahng, Ion I. Mandoiu, Feodor F. Dragan, 2000, IEEE/ACM International Conference on Computer Aided Design. ICCAD - 2000. IEEE/ACM Digest of Technical Papers (Cat. No.00CH37140).

Computational Methods for Next Generation Sequencing Data Analysis

Alexander Zelikovsky, Ion I. Mandoiu, A. Zelikovsky, 2016 .

Linkage disequilibrium based genotype calling from low-coverage shotgun sequencing reads

Ion I. Mandoiu, Justin Kennedy, Yufeng Wu, 2011, BMC Bioinformatics.

Provably good global buffering by multi-terminal multicommodity flow approximation

Andrew B. Kahng, Ion I. Mandoiu, Feodor F. Dragan, 2001, ASP-DAC '01.

Highly Scalable Algorithms for Robust String Barcoding

Kishori M. Konwar, Ion I. Mandoiu, Bhaskar DasGupta, 2005, International Conference on Computational Science.

CAME 2017: 6th Workshop on Computational Advances in Molecular Epidemiology

Ion I. Mandoiu, Pavel Skums, Alex Zelikovsky, 2017, BCB.

SILP3: Maximum likelihood approach to scaffolding

Igor Mandric, Ion I. Mandoiu, Alex Zelikovsky, 2014, 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Practical Approximations of Steiner Trees in Uniform Orientation Metrics

Andrew B. Kahng, Ion I. Mandoiu, Alex Zelikovsky, 2007, Handbook of Approximation Algorithms and Metaheuristics.

Estimation of Alternative Splicing isoform Frequencies from RNA-Seq Data

Ion I. Mandoiu, Alex Zelikovsky, Serghei Mangul, 2010, WABI.

Flexible approach for novel transcript reconstruction from RNA-seq data using maximum likelihood integer programming

Alexander Zelikovsky, Ion I. Mandoiu, Dumitru Brinza, 2013, BICoB 2013.

Subfield scheduling for throughput maximization in electron-beam photomask fabrication

Andrew B. Kahng, Ion I. Mandoiu, Sergey V. Babin, 2003, SPIE Advanced Lithography.

Special Issue: 10th International Computational Advances in Bio and Medical Sciences (ICCABS 2020)

Sanguthevar Rajasekaran, Ion I. Mandoiu, Pavel Skums, 2021, J. Comput. Biol..

Special Issue: 9th International Computational Advances in Bio and Medical Sciences (ICCABS 2019)

Giri Narasimhan, T. M. Murali, Sanguthevar Rajasekaran, 2021, J. Comput. Biol..