Anthony J. Kusalik

发表

The File System of a Logic Operating System

Anthony J. Kusalik, 1984 .

Dynamic Model-based Clustering for Time-course Gene Expression Data

Fang-Xiang Wu, Wenjun Chris Zhang, Anthony J. Kusalik, 2005, J. Bioinform. Comput. Biol..

Programmer-Oriented Visualization of Parallel Logic Program Execution

Steven David Prestwich, Anthony J. Kusalik, 1993, LPE.

Preface

Mireille Ducassé, Germán Puebla, Anthony J. Kusalik, 1999, Electron. Notes Theor. Comput. Sci..

Determination of the minimum number of microarray experiments for discovery of gene expression patterns

Fang-Xiang Wu, Wenjun Chris Zhang, Anthony J. Kusalik, 2006, BMC Bioinformatics.

A better sequence-read simulator program for metagenomics

Jeffrey R. Long, Stephen Johnson, Anthony J. Kusalik, 2014, BMC Bioinformatics.

A Logical Treatment of Secondary Storage

Ian T. Foster, Anthony J. Kusalik, A. Kusalik, 1986, SLP.

Gene Set Databases: A Fountain of Knowledge or a Siren Call?

Ian McQuillan, Anthony J. Kusalik, Farhad Maleki, 2019, BCB.

Sample Size and Reproducibility of Gene Set Analysis

Ian McQuillan, Anthony J. Kusalik, Farhad Maleki, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Gene Set Overlap: An Impediment to Achieving High Specificity in Over-representation Analysis

Anthony J. Kusalik, Farhad Maleki, 2020 .

High-Level Visualisation of Parallel Logic Program Execution

Steven David Prestwich, Anthony J. Kusalik, 1994, PARLE.

Gene Set Analysis: Challenges, Opportunities, and Future Research

Anthony J. Kusalik, Farhad Maleki, Katie Ovens, 2020, Frontiers in Genetics.

A genetic algorithm for inferring time delays in gene regulatory networks

Fang-Xiang Wu, Wenjun Chris Zhang, Anthony J. Kusalik, 2004, Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004..

Application of a Multi-Structure Neural Network (MSNN) to Sorting Pistachio Nuts

Joseph Irudayaraj, Anthony J. Kusalik, Ahmad Ghazanfari, 1997, Int. J. Neural Syst..

The oligodeoxynucleotide sequences corresponding to never-expressed peptide motifs are mainly located in the non-coding strand

Anthony J. Kusalik, Mikelis G. Bickis, Brett Trost, 2010, BMC Bioinformatics.

NovoExD: De novo Peptide Sequencing for ETD/ECD Spectra

Fang-Xiang Wu, Yan Yan, Anthony J. Kusalik, 2017, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Visualizing Parallel Logic Program Execution for Performance Tuning

Steven David Prestwich, Anthony J. Kusalik, S. Prestwich, 1996, JICSLP.

Comparing Four Genome-Wide Association Study (GWAS) Programs with Varied Input Data Quantity

Yan Yan, Juxin Liu, Anthony J. Kusalik, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

A Constraint-Based Declarative Display Description Language for Visualization

Anthony J. Kusalik, Gregory M. Oster, 1993, LPE.

Equivalent input produces different output in the UniFrac significance test

Jeffrey R. Long, Anthony J. Kusalik, Brett Trost, 2012, BMC Bioinformatics.

Computational phosphorylation site prediction in plants using random forests and organism-specific instance weights

Anthony J. Kusalik, Brett Trost, B. Trost, 2013, Bioinform..

Resolving Color Conflicts During Color Unification

Eric Neufeld, Anthony J. Kusalik, 1997, LPE.

Area-Efficient VLSI Layouts for Binary Hypercubes

Alpesh Patel, Carl McCrosky, Anthony J. Kusalik, 2000, IEEE Trans. Computers.

On Determination of Minimum Sample Size for Discovery of Temporal Gene Expression Patterns

Fang-Xiang Wu, Wenjun Chris Zhang, Anthony J. Kusalik, 2006, First International Multi-Symposiums on Computer and Computational Sciences (IMSCCS'06).

Case study: using sequence homology to identify putative phosphorylation sites in an evolutionarily distant species (honeybee)

Anthony J. Kusalik, Brett Trost, Scott Napper, 2015, Briefings Bioinform..

An implementation architecture for orthogonally persistent deductive object-oriented database systems

Mohammad Ashrafuzzaman, Anthony J. Kusalik, 1999, Proceedings. IDEAS'99. International Database Engineering and Applications Symposium (Cat. No.PR00265).

NovoGMET: De Novo Peptide Sequencing Using Graphs with Multiple Edge Types (GMET) for ETD/ECD Spectra

Fang-Xiang Wu, Yan Yan, Anthony J. Kusalik, 2014, ISBRA.

A Genetic K-means Clustering Algorithm Applied to Gene Expression Data

Fang-Xiang Wu, Wenjun Chris Zhang, Anthony J. Kusalik, 2003, Canadian Conference on AI.

NovoPair: De novo peptide sequencing for tandem mass spectra pair

Fang-Xiang Wu, Yan Yan, Anthony J. Kusalik, 2014, 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Determination of the minimum sample size in microarray experiments to cluster genes using k-means clustering

Fang-Xiang Wu, Wenjun Chris Zhang, Anthony J. Kusalik, 2003, Third IEEE Symposium on Bioinformatics and Bioengineering, 2003. Proceedings..

Modeling Gene Expression from Microarray Expression Data with State-Space Equations

Fang-Xiang Wu, Wenjun Chris Zhang, Anthony J. Kusalik, 2003, Pacific Symposium on Biocomputing.

Using a State-Space Model and Location Analysis to Infer Time-Delayed Regulatory Networks

Fang-Xiang Wu, Anthony J. Kusalik, Gopalan Selvaraj, 2009, EURASIP J. Bioinform. Syst. Biol..

State-space model for gene regulatory networks with time delays

Fang-Xiang Wu, Wenjun Chris Zhang, Anthony J. Kusalik, 2004, Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004..

Serialization of process reduction in Concurrent Prolog

Anthony J. Kusalik, 2009, New Generation Computing.

Optimally-connected Hidden Markov Models for Predicting Mhc-binding Peptides

Fang-Xiang Wu, Anthony J. Kusalik, Mikelis G. Bickis, 2006, J. Bioinform. Comput. Biol..

DAPPLE: a pipeline for the homology-based prediction of phosphorylation sites

Anthony J. Kusalik, Philip Griebel, Brett Trost, 2013, Bioinform..

Genetic Weighted K-means for Large-Scale Clustering Problems

Fang-Xiang Wu, Wenjun Chris Zhang, Anthony J. Kusalik, 2005, FLAIRS Conference.

Specification and initialization of a logic computer system

Anthony J. Kusalik, A. Kusalik, 1986, New Generation Computing.

Bounded-wait merge in Shapiro’s Concurrent Prolog

Anthony J. Kusalik, 2009, New Generation Computing.

Improving First-Class Array Expressions Using Prolog

Carl McCrosky, Anthony J. Kusalik, 1988, ICLP/SLP.

Computational prediction of eukaryotic phosphorylation sites

Anthony J. Kusalik, Brett Trost, B. Trost, 2011, Bioinform..

Effects of input data quantity on genome-wide association studies (GWAS)

Yan Yan, Juxin Liu, Anthony J. Kusalik, 2019, Int. J. Data Min. Bioinform..

Colour Tagging for Prolog Visualization (Poster Abstract)

Eric Neufeld, Anthony J. Kusalik, Michael Dobrohoczki, 1996, JICSLP.

A multi-edge graph based de novo peptide sequencing method for HCD spectra

Fang-Xiang Wu, Yan Yan, Anthony J. Kusalik, 2013, 2013 IEEE International Conference on Bioinformatics and Biomedicine.

The UniFrac significance test generates different outputs given semantically equivalent inputs

Jeffrey R. Long, Anthony J. Kusalik, Brett Trost, 2014, BCB.

Model-based clustering with genes expression dynamics for time-course gene expression data

Fang-Xiang Wu, Wenjun Chris Zhang, Anthony J. Kusalik, 2004, Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering.

Secondary storage in a concurrent logic programming environment

Anthony J. Kusalik, A. Kusalik, 1990, J. Syst. Softw..

Icola — Incremental Constraint-Based Graphics for Visualization

Anthony J. Kusalik, Gregory M. Oster, A. Kusalik, 1998, Constraints.

Proceedings of the Eleventh Workshop on Logic Programming Environments (WLPE'01), Paphos, Cyprus, December 1, 2001

Anthony J. Kusalik, 2001, LPE.

Visual Metaphors fro Understanding Logic Program Execution

Eric Neufeld, Anthony J. Kusalik, Michael Dobrohoczki, 1997, Graphics Interface.

Towards Generalized Visualization Support for Logic Programming

Anthony J. Kusalik, Gregory M. Oster, 1993, ICLP.

An algorithm to reconstruct a target DNA sequence from its spectrum connected at a given level

Fang-Xiang Wu, Wenjun Chris Zhang, Anthony J. Kusalik, 2003, Third IEEE Symposium on Bioinformatics and Bioengineering, 2003. Proceedings..

Size matters: how sample size affects the reproducibility and specificity of gene set analysis

Ian McQuillan, Anthony J. Kusalik, Farhad Maleki, 2019, Human Genomics.

Topological Channel Routing Using Constraint Logic Programming

Anthony J. Kusalik, Carl D. McCrosky, Andrew Hughes, 2000 .

NovoHCD: De novo Peptide Sequencing From HCD Spectra

Fang-Xiang Wu, Anthony J. Kusalik, Yan Yan, 2014, IEEE Transactions on NanoBioscience.