Daniel Rokhsar

BELLA: Berkeley Efficient Long-Read to Long-Read Aligner and Overlapper

Katherine A. Yelick, Aydin Buluç, Marquita Ellis, 2021, ACDA.

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

Andrea Zuccolo, Mark Borodovsky, Simon Prochnik, 2014, Nature Biotechnology.

The genomic landscape of molecular responses to natural drought stress in Panicum hallii

Anna Lipzen, Dave Kudrna, Jeremy Schmutz, 2018, Nature Communications.

The Capsella rubella genome and the genomic consequences of rapid mating system evolution

Mathieu Blanchette, Wei Wang, Hadi Quesneville, 2013, Nature Genetics.

Reverse Methanogenesis: Testing the Hypothesis with Environmental Genomics

Daniel Rokhsar, E. Delong, S. Hallam, 2004, Science.