Daifeng Wang

发表

SPCp1-06: Codebook Design for Noncoherent MIMO Communications Via Reflection Matrices

Brian L. Evans, Daifeng Wang, B. Evans, 2006, IEEE Globecom 2006.

DREISS: Using State-Space Models to Infer the Dynamics of Gene Expression Driven by External and Internal Regulatory Networks

Mark Gerstein, Sergei Maslov, Fei He, 2016, PLoS Comput. Biol..

ManiNetCluster: A Manifold Learning Approach to Reveal the Functional Linkages Across Multiple Gene Networks

Nam Nguyen, Daifeng Wang, Ian K. Blaby, 2018, bioRxiv.

A Manifold Learning Based Approach to Reveal the Functional Linkages across Multiple Gene Networks

Nam Nguyen, Daifeng Wang, Ian Blaby, 2018, BCB.

Comparative network analysis of gene co-expression networks reveals the conserved and species-specific functions of cell-wall related genes between Arabidopsis and Poplar

Mark Gerstein, Sergei Maslov, Gang Fang, 2013, BCB.

Genomics and Systems Biology

Chao Cheng, Daifeng Wang, 2018 .

Latch Modeling for Statistical Timing Analysis

David Z. Pan, Anand Ramalingam, Sean X. Shi, 2008, 2008 Design, Automation and Test in Europe.

Comparative analysis of regulatory information and circuits across distant species

Peter J. Bickel, Mark Gerstein, Philip Cayting, 2014, Nature.

Cross-Disciplinary Network Comparison: Matchmaking Between Hairballs.

Mark Gerstein, Robert Kitchen, Daifeng Wang, 2016, Cell systems.

Interpretable Machine Learning Approach Reveals Developmental Gene Expression Biomarkers for Cancer Patient Outcomes at Early Stages

Jonas S. Almeida, So Yeon Min, Daifeng Wang, 2018, BCB.

An integrative ENCODE resource for cancer genomics

Jie Xu, Lucas Lochovsky, Donghoon Lee, 2019, Nature Communications.

Multiple-Swarm Ensembles: Improving the Predictive Power and Robustness of Predictive Models and Its Use in Computational Biology

Mark Gerstein, Shuang Liu, Pedro Alves, 2018, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Loregic: A Method to Characterize the Cooperative Logic of Regulatory Factors

Mark Gerstein, Chao Cheng, Daifeng Wang, 2015, PLoS Comput. Biol..

Eigen-Genomic System Dynamic-Pattern Analysis (ESDA): Modeling mRNA Degradation and Self-Regulation

Ari Arapostathis, Mia K. Markey, Claus O. Wilke, 2012, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

The DOE Systems Biology Knowledgebase (KBase)

Fangfang Xia, Rick Stevens, Mark Gerstein, 2016, bioRxiv.

Varmole: a biologically drop-connect deep neural network model for prioritizing disease risk variants and genes

Daifeng Wang, Ting Jin, Nam D. Nguyen, 2021, Bioinform..

ECMarker: interpretable machine learning model identifies gene expression biomarkers predicting clinical outcomes and reveals molecular mechanisms of human disease in early stages

Daifeng Wang, Ting Jin, Flaminia Talos, 2019, bioRxiv.

Effect of image registration on longitudinal analysis of retinal nerve fiber layer thickness of non-human primates using Optical Coherence Tomography (OCT)

Henry Grady Rylander, Daifeng Wang, Mia K Markey, 2015, Eye and Vision.

An approach for determining and measuring network hierarchy applied to comparing the phosphorylome and the regulome

Mark Gerstein, Daifeng Wang, Koon-Kiu Yan, 2015, Genome Biology.

Large-scale atlas of microarray data reveals the distinct expression landscape of different tissues in Arabidopsis.

Mark Gerstein, Sergei Maslov, Shinjae Yoo, 2016, The Plant journal : for cell and molecular biology.

Principal-Oscillation-Pattern Analysis of Gene Expression

Ari Arapostathis, Mia K. Markey, Claus O. Wilke, 2012, PloS one.

The real cost of sequencing: scaling computation to keep pace with data generation

Jing Zhang, Mark Gerstein, Farren J. Isaacs, 2016, Genome biology.

Erratum to: The real cost of sequencing: scaling computation to keep pace with data generation

Jing Zhang, Mark Gerstein, Daifeng Wang, 2016, Genome Biology.

Temporal Dynamics of Collaborative Networks in Large Scientific Consortia.

Mark Gerstein, Daifeng Wang, Koon-Kiu Yan, 2016, Trends in genetics : TIG.

Comparative analysis of pseudogenes across three phyla

Yan Zhang, Mark Diekhans, Jennifer Harrow, 2014, Proceedings of the National Academy of Sciences.

Comparative Analysis of the Transcriptome across Distant Species

Peter J. Bickel, Raymond K. Auerbach, Peter J. Park, 2014, Nature.

OrthoClust: an orthology-based network framework for clustering data across multiple species

Mark Gerstein, Daifeng Wang, Koon-Kiu Yan, 2014, Genome Biology.