B. Donald

发表

A Geometric Approach to Error Detection and Recovery for Robot Motion Planning with Uncertainty

Bruce Randall Donald, B. Donald, 1987, Artif. Intell..

Motion Planning with Six Degrees of Freedom

B. Donald, 1984 .

Upper and Lower Bounds for Programmable Vector Fields with Applications to MEMS and Vibratory Plate Parts Feeders

N. C. MacDonald, B. Donald, Karl-Friedrich B ohringer, 1996 .

Kinodynamic Motion Planning 1 Kinodynamic Motion Planning 5

B. Donald, J. Canny, P. Xavier, 1993 .

Near-optimal kinodynamic planning for robots with coupled dynamics bounds

B. Donald, P. Xavier, 1989, Proceedings. IEEE International Symposium on Intelligent Control 1989.

Robot motion planning with uncertainty in the geometric models of the robot and environment: A formal framework for error detection and recovery

Bruce Randall Donald, B. Donald, 1986, Proceedings. 1986 IEEE International Conference on Robotics and Automation.

Real-time robot motion planning using rasterizing computer graphics hardware

Bruce Randall Donald, Donald P. Greenberg, Jed Lengyel, 1990, SIGGRAPH.

Part Orientation with One or Two Stable Equilibria Using Programmable Vector Fields

B. Donald, Karl-Friedrich B ohringer, L. Kavraki, 1999 .

Reducing Mass Degeneracy in SAR by MS by Stable Isotopic Labeling

Chris Bailey-Kellogg, Bruce Randall Donald, Clifford Stein, 2000, J. Comput. Biol..

CATS (Coordinates of Atoms by Taylor Series): protein design with backbone flexibility in all locally feasible directions

Bruce Randall Donald, Mark Hallen, Mark A Hallen, 2017, Bioinform..

A Bayesian Approach for Determining Protein Side-Chain Rotamer Conformations Using Unassigned NOE Data

Pei Zhou, Bruce Randall Donald, Jianyang Zeng, 2011, RECOMB.

Distance Metrics for Comparing Shapes in the Plane

B. Donald, D. Kapur, Joseph, 2013 .

Extracting Structural Information from Residual Chemical Shift Anisotropy: Analytic Solutions for Peptide Plane Orientations and Applications to Determine Protein Structure

Anthony K. Yan, Pei Zhou, Bruce Randall Donald, 2013, RECOMB.

Sensor interpretation and task-directed planning using perceptual equivalence classes

Bruce Randall Donald, Jim Jennings, B. Donald, 1991, Proceedings. 1991 IEEE International Conference on Robotics and Automation.

A Novel Ensemble-Based Scoring and Search Algorithm for Protein Redesign and Its Application to Modify the Substrate Specificity of the Gramicidin Synthetase A Phenylalanine Adenylation Enzyme

Bruce Randall Donald, Ryan H. Lilien, Brian W. Stevens, 2005, J. Comput. Biol..

Symbolic and Numerical Computation for Artificial Intelligence

B. Donald, J. Mundy, D. Kapur, 1997 .

Information Invariants for Distributed Manipulation

Bruce Randall Donald, Daniela Rus, James S. Jennings, 1995, Int. J. Robotics Res..

Information invariants in robotics. II. Sensors and computation

Bruce Randall Donald, B. Donald, 1993, [1993] Proceedings IEEE International Conference on Robotics and Automation.

Using haptic vector fields for animation motion control

Bruce Randall Donald, Frederick Henle, Frederick V. Henle, 2000, Proceedings 2000 ICRA. Millennium Conference. IEEE International Conference on Robotics and Automation. Symposia Proceedings (Cat. No.00CH37065).

CMOS integrated ciliary actuator array as a general-purpose micromanipulation tool for small objects

John W. Suh, B. Donald, G. Kovacs, 1999 .

CMOS Integrated Organic Ciliary Actuator Arrays For General-Purpose Micromanipulation Tasks

John W. Suh, B. Donald, G. Kovacs, 2000 .

On motion planning with six degrees of freedom: Solving the intersection problems in configuration space

Bruce Randall Donald, B. Donald, 1985, Proceedings. 1985 IEEE International Conference on Robotics and Automation.

On the motion of compliantly-connected rigid bodies in contact. II. A system for analyzing designs for assembly

Bruce Randall Donald, Dinesh K. Pai, B. Donald, 1990, Proceedings., IEEE International Conference on Robotics and Automation.

A Search Algorithm for Motion Planning with Six Degrees of Freedom

Bruce Randall Donald, B. Donald, 1987, Artif. Intell..

A Bayesian Approach for Determining Protein Side-Chain Rotamer Conformations Using Unassigned NOE Data

Pei Zhou, Bruce Randall Donald, Jianyang Zeng, 2011, RECOMB.

A Hausdorff-based NOE assignment algorithm using protein backbone determined from residual dipolar couplings and rotamer patterns.

B. Donald, Jianyang Zeng, P. Zhou, 2008, Computational systems bioinformatics. Computational Systems Bioinformatics Conference.

Quantifier Elimination for Conjunctions of Linear Constraints via a Convex Hull Algorithm

B. Donald, D. Kapur, Joseph, 2013 .

A novel ensemble-based scoring and search algorithm for protein redesign, and its application to modify the substrate specificity of the gramicidin synthetase A phenylalanine adenylation enzyme

Bruce Randall Donald, Ryan H. Lilien, Brian W. Stevens, 2004, RECOMB.

Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design

Bruce Randall Donald, Ryan H. Lilien, Ivelin Georgiev, 2006, ISMB.

High-throughput inference of protein-protein interfaces from unassigned NMR data

Bruce Randall Donald, Ryan H. Lilien, Ramgopal R. Mettu, 2005, ISMB.

Algorithmic and Computational Robotics: New Directions

Bruce Randall Donald, Kevin M. Lynch, Daniela Rus, 2001 .

Kinodynamic motion planning

Bruce Randall Donald, John F. Canny, Patrick G. Xavier, 1993, JACM.

Upper and Lower Bounds for Programmable VectorFields with Applications to MEMS and Vibratory

B. Donald, C. Noel, MacDonaldCornell, 1996 .

Algorithms for Sensorless Manipulation Using a Vibrating Surface

Bruce Randall Donald, Kenneth Y. Goldberg, Karl-Friedrich Böhringer, 2000, Algorithmica.

Automated NMR Assignment and Protein Structure Determination using Sparse Dipolar Coupling Constraints.

Bruce R Donald, B. Donald, Jeffrey W. Martin, 2009, Progress in nuclear magnetic resonance spectroscopy.

Crystal structure , conformational fixation , and entry-related interactions of mature ligand-free HIV-1 Env

Young Do Kwon, Tongqing Zhou, Baoshan Zhang, 2016 .

Artificial Intelligence On information invariants in robotics *

B. Donald, 1992 .

Structure determination of symmetric homo‐oligomers by a complete search of symmetry configuration space, using NMR restraints and van der Waals packing

B. Donald, C. Bailey-Kellogg, A. Yan, 2006, Proteins.

CMOS Integrated Organic Ciliary Actuator Array as a General-Purpose Micromanipulation Tool for Small Objects

John W. Suh, B. Donald, Karl-Friedrich B ohringer, 1999 .

A Distributed, Universal Device For Planar Parts Feeding: Unique Part Orientation in Programmable Force Fields

B. Donald, L. Kavraki, F. Lamiraux, 2000 .

Chapter 6 2 D and 3 D Object Recognition and Positioning with Algebraic Invariants and Covariants

B. Donald, D. Kapur, 2013 .

Single-crystal silicon actuator arrays for micro manipulation tasks

N. C. MacDonald, B. Donald, K. Bohringer, 1996, Proceedings of Ninth International Workshop on Micro Electromechanical Systems.

Auditory synapses to song premotor neurons are gated off during vocalization in zebra finches

Bruce R Donald, Kosuke Hamaguchi, Richard Mooney, 2014, eLife.

Reducing mass degeneracy in SAR by MS by stable isotopic labeling.

B. Donald, C. Bailey-Kellogg, J. Kelley, 2000, Journal of computational biology : a journal of computational molecular cell biology.

SAR by MS for Functional Genomics∗

B. Donald, C. Bailey-Kellogg, J. Kelley, 1999 .

Continuous interdomain orientation distributions reveal components of binding thermodynamics

B. Donald, A. Yan, T. Oas, 2017, bioRxiv.

Computational Analysis of Energy Landscapes Reveals Dynamic Features that Contribute to Binding of Inhibitors to CFTR-Associated Ligand

Anna U. Lowegard, Graham T. Holt, B. Donald, 2019, bioRxiv.

Computational structure-based redesign of enzyme activity

Amy C. Anderson, B. Donald, A. Anderson, 2009, Proceedings of the National Academy of Sciences.

Chiral evasion and stereospecific antifolate resistance in Staphylococcus aureus

Marcel S. Frenkel, Graham T. Holt, B. Donald, 2020, bioRxiv.

3.1 Compute Node Setup................................... 8

B. Donald, I. Georgiev, 2009 .

r Chapter 10 Symbolic Methods for the Simulation of Planar Mechanical Systems in Design

B. Donald, D. Kapur, Joseph, 2013 .

Toward Broad Spectrum DHFR inhibitors Targeting Trimethoprim Resistant Enzymes Identified in Clinical Isolates of Methicillin-Resistant Staphylococcus aureus

Marcel S. Frenkel, Graham T. Holt, B. Donald, 2019, bioRxiv.

Toward Broad Spectrum DHFR inhibitors Targeting Trimethoprim Resistant Enzymes Identified in Clinical Isolates of Methicillin-Resistant Staphylococcus aureus.

Marcel S. Frenkel, Graham T. Holt, B. Donald, 2019, ACS infectious diseases.

r Chapter 12 Symbolic and Parallel Adaptive Methods for Partial Differential Equations

B. Donald, J. Flaherty, J. Mundy, 2013 .

Information Invariants for Distributed Manipulation 1

B. Donald, J. Jennings, Daniela RusyRobotics, 1995 .

The Crystal Structure of Dihydrofolate Reductase-Thymidylate Synthase from Cryptosporidium hominis Reveals a Novel Architecture for the Bifunctional Enzyme

B. Donald, R. Stroud, R. Lilien, 2003 .

Hash: a program to accurately predict protein Hα shifts from neighboring backbone shifts

B. Donald, Jianyang Zeng, P. Zhou, 2013, Journal of biomolecular NMR.

Chapter 14 Symbolic / Numeric Techniques in Modeling and Simulation

B. Donald, D. Kapur, Joseph, 2013 .

A HAUSDORFF-BASED NOE ASSIGNMENT ALGORITHM USING PROTEIN BACKBONE DETERMINED FROM RESIDUAL DIPOLAR COUPLINGS AND ROTAMER PATTERNS.

B. Donald, Jianyang Zeng, P. Zhou, 2008, Computational systems bioinformatics. Computational Systems Bioinformatics Conference.

Dead‐end elimination with perturbations (DEEPer): A provable protein design algorithm with continuous sidechain and backbone flexibility

Mark A Hallen, B. Donald, D. Keedy, 2013, Proteins.

Efficient Partition Function Estimatation in Computational Protein Design : Probabalistic Guarantees and Characterization of a Novel Algorithm By : Hunter Nisonoff Advisers :

B. Donald, Dr. Mauro Maggioni, 2015 .

What Should a Roboticist do Next? A Progress Report From the Cornell Computer Science Robotics Laboratory

Bruce Randall Donald, Dinesh K. Pai, Patrick G. Xavier, 1989 .

Micro Contacts and Micro Manipulationwith MEMS Actuator

B. Donald, Karl-Friedrich B ohringer, 2007 .

Simplified Voronoi diagrams

Bruce Randall Donald, John F. Canny, B. Donald, 1987, SCG '87.

Chapter 7 Applications of Invariant Theory in Computer Vision

B. Donald, D. Kapur, Joseph, 2013 .

Computational Methods for the Design and Control ofMicrofabricated Actuator

John W. Suh, B. Donald, G. Kovacs, 2007 .

rdomain Orientation veal Components of Binding s arb

B. Donald, A. Yan, T. Oas, 2018 .

Systematic solution to homo‐oligomeric structures determined by NMR

B. Donald, P. Zhou, Jeffrey W. Martin, 2015, Proteins.

RESISTOR: A New OSPREY Module to Predict Resistance Mutations

B. Donald, T. Kaserer, Nathan Guerin, 2022, J. Comput. Biol..

An Untethered, Electrostatic, Globally Controllable

Bruce Randall Donald, Craig D. McGray, Daniela Rus, 2006 .

A Markov Random Field Framework for Protein Side-Chain Resonance Assignment ? ( Supporting Material )

B. Donald, Jianyang Zeng, P. Zhou, 2010 .

Force FieldCan Uniquely Pose Any Part up to SymmetryKarl

B. Donald, L. Kavraki, F. Lamiraux, 2007 .

The EIGHT Manual: A System for Geometric Modelling and Three-Dimensional Graphics on the Lisp Machine

Bruce Randall Donald, B. Donald, 1984 .

Constructive recognizability for task-directed robot programming

Bruce Randall Donald, James S. Jennings, B. Donald, 1992, Proceedings 1992 IEEE International Conference on Robotics and Automation.

An algebraic geometry approach to protein structure determination from NMR data

Bruce Randall Donald, Ramgopal R. Mettu, Lincong Wang, 2005, 2005 IEEE Computational Systems Bioinformatics Conference (CSB'05).

A maximum entropy algorithm for rhythmic analysis of genome-wide expression patterns

Bruce Randall Donald, Christopher James Langmead, C. Robertson McClung, 2002, Proceedings. IEEE Computer Society Bioinformatics Conference.

Continuous interdomain orientation distributions reveal components of binding thermodynamics

Anthony K. Yan, Bruce Randall Donald, Terrence G. Oas, 2017, bioRxiv.

Accessible animation and customizable graphics via simplicial configuration modeling

Bruce Randall Donald, Tom Ngo, Doug Cutrell, 2000, SIGGRAPH.

Identification of Novel Small Molecule Inhibitors of Core-Binding Factor Dimerization by Computational Screening against NMR Molecular Ensemble

B. Donald, R. Lilien, M. Sridharan, 2004 .

Allosteric inhibition of the protein-protein interaction between the leukemia-associated proteins Runx1 and CBFbeta.

Bruce R Donald, Jolanta Grembecka, Yali Kong, 2007, Chemistry & biology.

Resistor: an algorithm for predicting resistance mutations using Pareto optimization over multistate protein design and mutational signatures

B. Donald, E. Stefan, T. Kaserer, 2022, bioRxiv.

Enhanced Potency of a Broadly Neutralizing HIV-1 Antibody In Vitro Improves Protection against Lentiviral Infection In Vivo

Young Do Kwon, Mario Roederer, Tongqing Zhou, 2014, Journal of Virology.

The Role of Local Backrub Motions in Evolved and Designed Mutations

Bruce Randall Donald, Ivelin Georgiev, David C. Richardson, 2012, PLoS Comput. Biol..

, In Vivo Infection Improves Protection against Lentiviral In Vitro Neutralizing HIV-1 Antibody Enhanced Potency of a Broadly

Kyle E. Roberts, Cinque S. Soto, B. Donald, 2014 .

Phylogenetic Classification of Protozoa Based on the Structure of the Linker Domain in the Bifunctional Enzyme, Dihydrofolate Reductase-Thymidylate Synthase*

Bruce R Donald, Robert M Stroud, Ryan H Lilien, 2003, Journal of Biological Chemistry.

Nmr Structural Inference of Symmetric Homo-oligomers

Anthony K. Yan, Chris Bailey-Kellogg, Bruce Randall Donald, 2022 .

Extracting structural information using time-frequency analysis of protein NMR data

Bruce Randall Donald, Christopher James Langmead, B. Donald, 2001, RECOMB.

Fast search algorithms for computational protein design

Bruce Randall Donald, Thomas Schiex, Sophie Barbe, 2016, J. Comput. Chem..

Simultaneous determination of subunit and complex structures of symmetric homo-oligomers from ambiguous NMR data

Chris Bailey-Kellogg, Bruce Randall Donald, Himanshu Chandola, 2013, BCB.

A graphical method for analyzing distance restraints using residual dipolar couplings for structure determination of symmetric protein homo‐oligomers

B. Donald, C. Bailey-Kellogg, A. Yan, 2011, Protein science : a publication of the Protein Society.

A Geometric Arrangement Algorithm for Structure Determination of Symmetric Protein Homo-Oligomers from NOEs and RDCs

Jeffrey W. Martin, Anthony K. Yan, Chris Bailey-Kellogg, 2011, J. Comput. Biol..

High-resolution protein structure determination starting with a global fold calculated from exact solutions to the RDC equations

Bruce Randall Donald, Chittaranjan Tripathy, Jianyang Zeng, 2009, Journal of biomolecular NMR.

Supplementary Material for “ High-Resolution Protein Structure Determination Starting with a Global Fold Calculated from Exact Solutions ”

B. Donald, Jianyang Zeng, Chittaranjan Tripathy, 2009 .

Structure-based protein NMR assignments using native structural ensembles

Vincent Conitzer, Bruce Randall Donald, B. Donald, 2008, Journal of biomolecular NMR.

A complete algorithm to resolve ambiguity for intersubunit NOE assignment in structure determination of symmetric homo‐oligomers

Shobha Potluri, B. Donald, C. Bailey-Kellogg, 2006, Protein science : a publication of the Protein Society.

Extended Abstract: Structure Determination of Symmetric Protein Complexes by a Complete Search of Symmetry Configuration Space Using NMR Distance Restraints

Anthony K. Yan, Chris Bailey-Kellogg, Bruce Randall Donald, 2006, WAFR.

A subgroup algorithm to identify cross-rotation peaks consistent with non-crystallographic symmetry.

B. Donald, C. Bailey-Kellogg, R. Lilien, 2004, Acta crystallographica. Section D, Biological crystallography.

Probabilistic Disease Classification of Expression-Dependent Proteomic Data from Mass Spectrometry of Human Serum

Bruce Randall Donald, Hany Farid, Ryan H. Lilien, 2003, J. Comput. Biol..

An efficient and accurate algorithm for assigning nuclear overhauser effect restraints using a rotamer library ensemble and residual dipolar couplings

Bruce Randall Donald, Lincong Wang, B. Donald, 2005, 2005 IEEE Computational Systems Bioinformatics Conference (CSB'05).

3D structural homology detection via NMR resonance assignment

Bruce Randall Donald, Christopher James Langmead, B. Donald, 2004, Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004..

An expectation/maximization nuclear vector replacement algorithm for automated NMR resonance assignments

Bruce Randall Donald, Christopher James Langmead, B. Donald, 2004, Journal of biomolecular NMR.

Large a polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments

Anthony K. Yan, Bruce Randall Donald, Ryan H. Lilien, 2003, RECOMB '03.

The NOESY jigsaw: automated protein secondary structure and main-chain assignment from sparse, unassigned NMR data

Chris Bailey-Kellogg, Bruce Randall Donald, Alik Widge, 2000, RECOMB '00.

Provably good approximation algorithms for optimal kinodynamic planning for Cartesian robots and open-chain manipulators

Bruce Randall Donald, Patrick G. Xavier, B. Donald, 1995, Algorithmica.

Time-safety trade-offs and a bang-bang algorithm for kinodynamic planning

Bruce Randall Donald, Patrick G. Xavier, B. Donald, 1991, Proceedings. 1991 IEEE International Conference on Robotics and Automation.

Provably good approximation algorithms for optimal kinodynamic planning for Cartesian robots and open chain manipulators

Bruce Randall Donald, Patrick G. Xavier, B. Donald, 1990, SCG '90.

OSPREY 3.0: Open-Source Protein Redesign for You, with Powerful New Features

Jeffrey W. Martin, Bruce Randall Donald, David Zhou, 2018, bioRxiv.

BBK* (Branch and Bound Over K*): A Provable and Efficient Ensemble-Based Protein Design Algorithm to Optimize Stability and Binding Affinity Over Large Sequence Spaces

Bruce R Donald, Jonathan D Jou, Adegoke A Ojewole, 2018, J. Comput. Biol..

BBK* (Branch and Bound over K*): A Provable and Efficient Ensemble-Based Algorithm to Optimize Stability and Binding Affinity over Large Sequence Spaces

Bruce Randall Donald, Adegoke Ojewole, Jonathan D. Jou, 2017, RECOMB.

Fast gap‐free enumeration of conformations and sequences for protein design

Pablo Gainza, Kyle E. Roberts, Mark A Hallen, 2015, Proteins.

Improved energy bound accuracy enhances the efficiency of continuous protein design

Bruce R Donald, Kyle E. Roberts, Kyle E Roberts, 2015, Proteins.

Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD:KRas protein-protein interface

Bruce Randall Donald, Adegoke Ojewole, Jonathan D. Jou, 2019, bioRxiv.

Minimization-Aware Recursive K*: A Novel, Provable Algorithm that Accelerates Ensemble-Based Protein Design and Provably Approximates the Energy Landscape

Bruce R Donald, Anna U. Lowegard, Graham T. Holt, 2019, J. Comput. Biol..

Computational Analysis of Energy Landscapes Reveals Dynamic Features that Contribute to Binding of Inhibitors to CFTR-Associated Ligand.

Anna U. Lowegard, Graham T. Holt, B. Donald, 2019, The journal of physical chemistry. B.

Minimization-Aware Recursive K^* K ∗ ( MARK^* MARK ∗ ): A Novel, Provable Algorithm that Accelerates Ensemble-Based Protein Design and Provably Approximates the Energy Landscape

Bruce Randall Donald, Jonathan D. Jou, Anna U. Lowegard, 2019, RECOMB.

A critical analysis of computational protein design with sparse residue interaction graphs

Bruce Randall Donald, Jonathan D. Jou, Swati Jain, 2017, PLoS Comput. Biol..

Parallel Computational Protein Design.

Yichao Zhou, Jianyang Zeng, Bruce R Donald, 2017, Methods in molecular biology.

OSPREY Predicts Resistance Mutations Using Positive and Negative Computational Protein Design.

Pablo Gainza, Bruce R Donald, Adegoke Ojewole, 2017, Methods in molecular biology.

LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-rotamer-like Efficiency

Bruce Randall Donald, Mark Hallen, Jonathan D. Jou, 2017, RECOMB.

cOSPREY: A Cloud-Based Distributed Algorithm for Large-Scale Computational Protein Design

Bruce Randall Donald, Wei Xu, Jianyang Zeng, 2016, J. Comput. Biol..

comets (Constrained Optimization of Multistate Energies by Tree Search): A Provable and Efficient Protein Design Algorithm to Optimize Binding Affinity and Specificity with Respect to Sequence

Bruce Randall Donald, Mark Hallen, Mark A Hallen, 2016, J. Comput. Biol..

Compact Representation of Continuous Energy Surfaces for More Efficient Protein Design.

Pablo Gainza, Bruce R Donald, Mark A Hallen, 2015, Journal of chemical theory and computation.

BWM*: A Novel, Provable, Ensemble-Based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design

Bruce Randall Donald, Ivelin Georgiev, Jonathan D. Jou, 2015, RECOMB.

Comets (Constrained Optimization of Multistate Energies by Tree Search): A Provable and Efficient Algorithm to Optimize Binding Affinity and Specificity with Respect to Sequence

Bruce Randall Donald, Mark Hallen, Mark A Hallen, 2015, RECOMB.

An efficient parallel algorithm for accelerating computational protein design

Bruce Randall Donald, Wei Xu, Yichao Zhou, 2014, Bioinform..

Osprey: Protein Design with Ensembles, Flexibility, and Provable Algorithms

Pablo Gainza, Ivelin Georgiev, Cheng-Yu Chen, 2022 .

Computational Design of a PDZ Domain Peptide Inhibitor that Rescues CFTR Activity

Bruce Randall Donald, Prisca Boisguerin, Kyle E. Roberts, 2012, PLoS Comput. Biol..

Protein Design Using Continuous Rotamers

Bruce Randall Donald, Pablo Gainza, Kyle E. Roberts, 2012, PLoS Comput. Biol..

Design of Protein-Protein Interactions with a Novel Ensemble-Based Scoring Algorithm

Bruce Randall Donald, Prisca Boisguerin, Kyle E. Roberts, 2011, RECOMB.

Protein loop closure using orientational restraints from NMR data

Pei Zhou, Bruce Randall Donald, Chittaranjan Tripathy, 2011, RECOMB.

Error Detection and Recovery in Robotics

Bruce Randall Donald, B. Donald, 1989, Lecture Notes in Computer Science.

On Computing the Homology Type of a Triangulation

Bruce Randall Donald, B. Donald, David Renpan Chang, 1990 .

Moving furniture with teams of autonomous robots

Bruce Randall Donald, Daniela Rus, Jim Jennings, 1995, Proceedings 1995 IEEE/RSJ International Conference on Intelligent Robots and Systems. Human Robot Interaction and Cooperative Robots.

An untethered, electrostatic, globally controllable MEMS micro-robot

B.R. Donald, C.G. Levey, I. Paprotny, 2006, Journal of Microelectromechanical Systems.

A Probability-Based Similarity Measure for Saupe Alignment Tensors with Applications to Residual Dipolar Couplings in NMR Structural Biology

Anthony K. Yan, Bruce Randall Donald, Christopher James Langmead, 2005, Int. J. Robotics Res..

Protein side-chain resonance assignment and NOE assignment using RDC-defined backbones without TOCSY data

Bruce Randall Donald, Jianyang Zeng, B. Donald, 2011, Journal of biomolecular NMR.

A Markov Random Field Framework for Protein Side-Chain Resonance Assignment

Pei Zhou, Bruce Randall Donald, Jianyang Zeng, 2010, RECOMB.

Planning and control for microassembly of structures composed of stress-engineered MEMS microrobots

Bruce Randall Donald, Daniela Rus, Igor Paprotny, 2013, Int. J. Robotics Res..

Programmable Force Fields for Distributed Manipulation, with Applications to MEMS Actuator Arrays and Vibratory Parts Feeders

Bruce Randall Donald, Karl-Friedrich Böhringer, Noel C. MacDonald, 1999, Int. J. Robotics Res..

Computational methods for design and control of MEMS micromanipulator arrays

Gregory T. A. Kovacs, N. C. MacDonald, John W. Suh, 1997 .

Sensorless manipulation using massively parallel microfabricated actuator arrays

Bruce Randall Donald, Karl-Friedrich Böhringer, Noel C. MacDonald, 1994, Proceedings of the 1994 IEEE International Conference on Robotics and Automation.

A theory of manipulation and control for microfabricated actuator arrays

K.-F. Bohringer, B.R. Donald, R. Mihailovich, 1994, Proceedings IEEE Micro Electro Mechanical Systems An Investigation of Micro Structures, Sensors, Actuators, Machines and Robotic Systems.

Power delivery and locomotion of untethered microactuators

Craig D. McGray, Daniela Rus, Christopher G. Levey, 2003 .

On the Area Bisectors of a Polygon

Bruce Randall Donald, Karl-Friedrich Böhringer, Dan Halperin, 1999, Discret. Comput. Geom..

Simplified Voronoi diagrams

Bruce Randall Donald, John F. Canny, B. Donald, 1987, SCG '87.

A Mathematical Framework for Combinatorial / Structural Analysis of Linear Dynamical Systems by Means of Matroids

B. Donald, D. Kapur, Joseph, 2013 .

Part orientation with one or two stable equilibria using programmable force fields

Bruce Randall Donald, Lydia E. Kavraki, Florent Lamiraux, 2000, IEEE Trans. Robotics Autom..

A DISTRIBUTED , UNIVERSAL DEVICEFOR PLANAR PARTS FEEDING : UNIQUE PART ORIENTATION

Lydia E. Kavraki, Florent Lamiraux, B. Donald, 2000 .

Algorithmic MEMS

Bruce Randall Donald, Karl F. Böhringer, B. Donald, 1998 .

Guest editor's foreword special issue on computational robotics: The geometric theory of manipulation, planning, and control

Bruce Randall Donald, B. Donald, 1993, Algorithmica.

The Motion of Planar, Compliantly Connected Rigid Bodies in Contact, With Applications to Automatic Fastening

Bruce Randall Donald, Dinesh K. Pai, B. Donald, 1993, Int. J. Robotics Res..

The complexity of planar compliant motion planning under uncertainty

Bruce Randall Donald, B. Donald, 1988, SCG '88.

Analyzing teams of cooperating mobile robots

Bruce Randall Donald, Daniela Rus, James Jennings, 1994, Proceedings of the 1994 IEEE International Conference on Robotics and Automation.

Classification and Lower Bounds for MEMS Arrays and Vibratory Parts Feeders: What Programmable Vector Fields Can (and Cannot) Do --Part I

Noel C. MacDonald, Karl F. Böhringer, Bruce R. Donald, 1995 .

Protocol for predicting drug-resistant protein mutations to an ERK2 inhibitor using RESISTOR

B. Donald, T. Kaserer, N. Guerin, 2023, STAR protocols.

Algorithms for protein design.

Pablo Gainza, Hunter M Nisonoff, Bruce R Donald, 2016, Current opinion in structural biology.

Exact Solutions for Internuclear Vectors and Backbone Dihedral Angles from NH Residual Dipolar Couplings in Two Media, and their Application in a Systematic Search Algorithm for Determining Protein Backbone Structure

Bruce Randall Donald, B. Donald, Lincong Wang, 2004, Journal of biomolecular NMR.

A Polynomial-Time Algorithm for De Novo Protein Backbone Structure Determination from Nuclear Magnetic Resonance Data

Bruce Randall Donald, Ramgopal R. Mettu, Lincong Wang, 2006, J. Comput. Biol..

A Polynomial-Time Algorithm for de novo Protein Backbone Structure Determination from NMR Data

Bruce Randall Donald, Ramgopal R. Mettu, B. Donald, 2006 .

Distributed manipulation of multiple objects using ropes

B. Donald, D. Rus, Larry Gariepy, 2000, Proceedings 2000 ICRA. Millennium Conference. IEEE International Conference on Robotics and Automation. Symposia Proceedings (Cat. No.00CH37065).

Phase-independent rhythmic analysis of genome-wide expression patterns

Anthony K. Yan, Bruce Randall Donald, Christopher James Langmead, 2002, RECOMB '02.

Improved HIV-1 neutralization breadth and potency of V2-apex antibodies by in silico design

Anna U. Lowegard, Marcel S. Frenkel, Graham T. Holt, 2023, Cell reports.

A Novel Minimized Dead-End Elimination Criterion and Its Application to Protein Redesign in a Hybrid Scoring and Search Algorithm for Computing Partition Functions over Molecular Ensembles

Bruce Randall Donald, Ryan H. Lilien, Ivelin Georgiev, 2006, RECOMB.

Redesigning the PheA domain of gramicidin synthetase leads to a new understanding of the enzyme's mechanism and selectivity.

Bruce R Donald, Ryan H Lilien, Amy C Anderson, 2006, Biochemistry.

Algorithm for backrub motions in protein design

Bruce Randall Donald, Ivelin Georgiev, David C. Richardson, 2008, ISMB.

Structure of an HIV-1–neutralizing antibody target, the lipid-bound gp41 envelope membrane proximal region trimer

Bruce R Donald, B. Donald, B. Haynes, 2014, Proceedings of the National Academy of Sciences.

3D structural homology detection via unassigned residual dipolar couplings

Bruce Randall Donald, Christopher James Langmead, B. Donald, 2003, Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003.

Minimal NMR distance information for rigidity of protein graphs

Bruce Randall Donald, Leo Liberti, Michael Nilges, 2019, Discret. Appl. Math..

Hash: a program to accurately predict protein Hα shifts from neighboring backbone shifts

B. Donald, Jianyang Zeng, Pei Zhou, 2013, Journal of biomolecular NMR.

By ArousalUnselective During Wakefulness, and Suppressed Highly Tuned During Sedation, Rapidly Modulated Song System Auditory Responses Are Stable and

Melissa L. Caras, Eliot A. Brenowitz, Marc F. Schmidt, 2015 .

A Single Universal Force Field Can Uniquely Orient Non-Symmetric Parts

Bruce Randall Donald, Lydia E. Kavraki, Florent Lamiraux, 2000 .

NVR-BIP: Nuclear vector replacement using binary integer programming for NMR structure-based assignments

Bruce Randall Donald, Bülent Çatay, Mehmet Serkan Apaydin, 2009, 2009 24th International Symposium on Computer and Information Sciences.

Algorithms in Structural Molecular Biology

Bruce Randall Donald, B. Donald, 2011 .

A data-driven, systematic search algorithm for structure determination of denatured or disordered proteins.

Bruce Randall Donald, B. Donald, Lincong Wang, 2006, Computational systems bioinformatics. Computational Systems Bioinformatics Conference.

Mathematical Questions in Robotics

Bruce Randall Donald, Richard M. Murray, S. Shankar Sastry, 1990 .

Disruptor: Computational identification of oncogenic mutants disrupting protein-protein and protein-DNA interactions

B. Donald, E. Stefan, T. Kaserer, 2023, Communications biology.

Protein design by provable algorithms

Bruce Randall Donald, Mark Hallen, Mark A Hallen, 2018, Commun. ACM.

Crystal structure, conformational fixation, and entry-related interactions of mature ligand-free HIV-1 Env

James B. Munro, Daniel S. Terry, Cinque S. Soto, 2015, Nature Structural &Molecular Biology.

Dead-End Elimination with Backbone Flexibility

Bruce Randall Donald, Ivelin Georgiev, B. Donald, 2007, ISMB/ECCB.

The NOESY Jigsaw: Automated Protein Secondary Structure and The NOESY Jigsaw: Automated Protein Secondary Structure and Main-Chain Assignment from Sparse, Unassigned NMR Data Main-Chain Assignment from Sparse, Unassigned NMR Data

B. Donald, C. Bailey-Kellogg, A. Widge, 2023 .

High-Throughput Inference of Protein-Protein Interaction Sites High-Throughput Inference of Protein-Protein Interaction Sites from Unassigned NMR Data by Analyzing Arrangements Induced from Unassigned NMR Data by Analyzing Arrangements Induced By Quadratic Forms on 3-Manifolds By Quadratic Forms on

Ramgopal R. Mettu, B. Donald, R. Lilien, 2005 .

homo-oligomers assignment in structure determination of symmetric A complete algorithm to resolve ambiguity for intersubunit NOE

B. Donald, C. Bailey-Kellogg, A. Yan, 2006 .

NMR Structural Inference of Symmetric Homo-Oligomers

B. Donald, C. Bailey-Kellogg, A. Yan, 2011, J. Comput. Biol..

Planning Multi-Step Error Detection and Recovery Strategies

B. Donald, 1990, Int. J. Robotics Res..

Intracellular Neural Recording with Pure Carbon Nanotube Probes

Kosuke Hamaguchi, B. Donald, G. Finkelstein, 2013, PloS one.

Planar Microassembly by Parallel Actuation of MEMS Microrobots

B. Donald, I. Paprotny, C. Levey, 2008, Journal of Microelectromechanical Systems.

A Steerable, Untethered, 250 × 60µm MEMS Mobile Micro-Robot

Bruce Randall Donald, Craig D. McGray, Daniela Rus, 2007, ISRR.

Simultaneous Control of Multiple MEMS Microrobots

Bruce Randall Donald, Daniela Rus, Igor Paprotny, 2008, WAFR.

Dartmouth Digital Commons Dartmouth Digital Commons A Steerable, Untethered, 250x60 micron MEMS Mobile Micro- A Steerable, Untethered, 250x60 micron MEMS Mobile Micro-Robot Robot

B. Donald, D. Rus, C. McGray, 2022 .

Hypothesizing Channels through Free-Space in Solving the Findpath Problem

Bruce Randall Donald, B. Donald, 1983 .

Enhanced Potency of a Broadly Neutralizing HIV-1 Antibody In Vitro Improves Protection against Lentiviral Infection In Vivo

Kyle E. Roberts, Cinque S. Soto, B. Donald, 2014, Journal of Virology.

Mathematical Modeling , Symbolic and Numerical Systems /

B. Donald, D. Kapur, Joseph, 2013 .

Protein design algorithms predict viable resistance to an experimental antifolate

Pablo Gainza, Bruce R Donald, Amy C Anderson, 2014, Proceedings of the National Academy of Sciences.

On the complexity of kinodynamic planning

Bruce Randall Donald, John F. Canny, Patrick G. Xavier, 1988, [Proceedings 1988] 29th Annual Symposium on Foundations of Computer Science.

Analysis of a systematic search-based algorithm for determining protein backbone structure from a minimum number of residual dipolar couplings

Bruce Randall Donald, Lincong Wang, B. Donald, 2004, Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004..

Supporting Information for Computational Analysis of Energy Landscapes Reveals Dynamic Features that Contribute to Binding of Inhibitors to CFTR-Associated Ligand

Graham T. Holt, B. Donald, D. Madden, 2019 .

Provably good approximation algorithms for optimal kinodynamic planning: Robots with decoupled dynamics bounds

Bruce Randall Donald, Patrick G. Xavier, B. Donald, 1995, Algorithmica.

On the complexity of computing the homology type of a triangulation

B.R. Donald, D.R. Chang, B. Donald, 1991, [1991] Proceedings 32nd Annual Symposium of Foundations of Computer Science.

3 Planning Multi-Step Error Detection and Recovery Strategies

B. Donald, 2006 .

On Information Invariants in Robotics

Bruce Randall Donald, B. Donald, 1995, Artif. Intell..

A rational rotation method for robust geometric algorithms

Bruce Randall Donald, John F. Canny, Eugene K. Ressler, 1991, SCG '92.

Predicting resistance mutations using protein design algorithms

Bruce R Donald, Amy C Anderson, B. Donald, 2010, Proceedings of the National Academy of Sciences.

A Geometric Arrangement Algorithm for Structure Determination of Symmetric Protein Homo-Oligomers from NOEs and RDCs

B. Donald, C. Bailey-Kellogg, A. Yan, 2011, J. Comput. Biol..

How we responded to reviewers’ comments: Novel, Provable Algorithms for Eﬃcient Ensemble-Based Computational Protein Design and Their Application to the Redesign of the c-Raf-RBD:KRas Protein-Protein Interface

Anna U. Lowegard, Marcel S. Frenkel, Graham T. Holt, 2020 .