Jian Peng

发表

Reconstructing Causal Biological Networks through Active Learning

Bonnie Berger, Hyunghoon Cho, Jian Peng, 2016, PloS one.

Quality score compression improves genotyping accuracy

Bonnie Berger, Jian Peng, Alyssa C. Frazee, 2015, Nature Biotechnology.

Compressive mapping for next-generation sequencing

Bonnie Berger, Jian Peng, Yun William Yu, 2016, Nature Biotechnology.

Variational Inference for Crowdsourcing

Jian Peng, Qiang Liu, Alexander T. Ihler, 2012, NIPS.

Widespread Macromolecular Interaction Perturbations in Human Genetic Disorders

István A. Kovács, Alexander T. Leighton, A. Barabasi, 2015, Cell.

A Quantitative Chaperone Interaction Network Reveals the Architecture of Cellular Protein Homeostasis Pathways

Bonnie Berger, Hyungwon Choi, Brett Larsen, 2014, Cell.

A computational framework for boosting confidence in high-throughput protein-protein interaction datasets

Bonnie Berger, Jinbo Xu, Ulrich Stelzl, 2012, Genome Biology.

Compact Integration of Mu lti-Network Topology for Functional Analysis of Genes Graphical Abstract Highlights

Hyunghoon Cho, B. Berger, Jian Peng, 2022 .

High-resolution de novo structure prediction from primary sequence

Jian Peng, B. Berger, Jianzhu Ma, 2022, bioRxiv.

Neural Data Visualization for Scalable and Generalizable Single Cell Analysis

Bonnie Berger, Hyunghoon Cho, Jian Peng, 2018, bioRxiv.

Computational solutions for omics data

Mona Singh, Bonnie Berger, Jian Peng, 2013, Nature Reviews Genetics.

Genome-Scale Networks Link Neurodegenerative Disease Genes to α-Synuclein through Specific Molecular Pathways.

Bonnie Berger, Ernest Fraenkel, Marc Vidal, 2017, Cell systems.

Metagenomic binning through low-density hashing

Bonnie Berger, Jian Peng, Jianyang Zeng, 2017, bioRxiv.

Deciphering Signaling Specificity with Deep Neural Networks

Jian Peng, T. Ideker, Jianzhu Ma, 2018, RECOMB.

Deep geometric representations for modeling effects of mutations on protein-protein binding affinity pdf

Sen Song, Xianggen Liu, Jian Peng, 2020, PLoS Comput. Biol..

Annotating gene sets by mining large literature collections with protein networks

Jiawei Han, Trey Ideker, Jianzhu Ma, 2017, PSB.

Deep learning guided optimization of human antibody against SARS-CoV-2 variants with broad neutralization

Jian Peng, Jianzhu Ma, Shitong Luo, 2022, Proceedings of the National Academy of Sciences of the United States of America.

Compressive genomics for protein databases

Lenore Cowen, Bonnie Berger, Jian Peng, 2013, Bioinform..

ProSNet: integrating homology with molecular networks for protein function prediction

Jian Peng, Sheng Wang, Meng Qu, 2017, PSB.

HapTree: A Novel Bayesian Framework for Single Individual Polyplotyping Using NGS Data

Bonnie Berger, Jian Peng, Emily Berger, 2014, PLoS Comput. Biol..

Diffusion Component Analysis: Unraveling Functional Topology in Biological Networks

Bonnie Berger, Jian Peng, Hyunghoon Cho, 2015, RECOMB.

Discovering What Dimensionality Reduction Really Tells Us About RNA-Seq Data

Bonnie Berger, Jian Peng, Sean Simmons, 2015, J. Comput. Biol..

Genome-Scale Networks Link Neurodegenerative Disease Genes to α-Synuclein through Specific Molecular Pathways.

Neville E. Sanjana, Bryan-Joseph San Luis, B. Berger, 2017, Cell systems.