M. Sternberg

Stephen Muggleton, Alireza Tamaddoni-Nezhad, Raphael A. G. Chaleil, 2007, IEEE engineering in medicine and biology magazine : the quarterly magazine of the Engineering in Medicine & Biology Society.

Knowledge-based prediction of protein structures and the design of novel molecules

T. L. Blundell, B. L. Sibanda, J. M. Thornton, 1987, Nature.

Local protein sequence similarity does not imply a structural relationship.

M J Sternberg, S A Islam, M. Sternberg, 1990, Protein engineering.

Protein side-chain conformational entropy derived from fusion data--comparison with other empirical scales.

M J Sternberg, M. Sternberg, J. Chickos, 1994, Protein engineering.

Prediction of ATP-binding motifs: a comparison of a perceptron-type neural network and a consensus sequence method

Jonathan D. Hirst, Michael J. E. Sternberg, M. Sternberg, 1991 .

Evaluation and improvements in the automatic alignment of protein sequences.

G J Barton, M J Sternberg, M. Sternberg, 1987, Protein engineering.

Can Predicted Protein 3D Structures Provide Reliable Insights into whether Missense Variants Are Disease Associated?

Suhail A. Islam, Michael J.E. Sternberg, Alessia David, 2019, Journal of molecular biology.

Prediction of ligand binding sites using homologous structures and conservation at CASP8

Michael J E Sternberg, Mark N. Wass, Mark N Wass, 2009, Proteins.

On the conformation of proteins: an analysis of β-pleated sheets

Janet M. Thornton, Michael J. E. Sternberg, M. Sternberg, 1977 .

On the conformation of proteins: the handedness of the connection between parallel beta-strands.

M J Sternberg, J M Thornton, M. Sternberg, 1977, Journal of molecular biology.

New approaches to QSAR: Neural networks and machine learning

Jonathan D. Hirst, Michael J. E. Sternberg, Robert King, 1993 .

Secondary structure prediction: Current Opinion in Structural Biology 1992, 2:237–241

Michael J. E. Sternberg, M. Sternberg, 1992 .

An approach to improving multiple alignments of protein sequences using predicted secondary structure.

M J Sternberg, M. Sternberg, A. J. Jennings, 2001, Protein engineering.

Analysis and prediction of the location of catalytic residues in enzymes.

M J Sternberg, M. Sternberg, M. Zvelebil, 1988, Protein engineering.

A structural census of metabolic networks for E. coli.

M J Sternberg, M. Sternberg, M. Saqi, 2001, Journal of molecular biology.

Structural bioinformatics 3 D-Garden : a system for modelling protein – protein complexes based on conformational refinement of ensembles generated with the marching cubes algorithm

M. Sternberg, V. Lesk, 2008 .

On the use of machine learning to identify topological rules in the packing of β-strands

R. King, M. Sternberg, D. Clark, 1994 .

ConFunc – Functional Annotation in the Twilight Zone Supplementary Information

M. Sternberg, M. Wass, 2014 .

In Silico Analysis of the Small Molecule Content of Outer Membrane Vesicles Produced by Bacteroides thetaiotaomicron Indicates an Extensive Metabolic Link between Microbe and Host

M. Sternberg, T. Wilhelm, W. Bryant, 2017, Front. Microbiol..

The Genome3D Consortium for Structural Annotations of Selected Model Organisms.

Daniel W. A. Buchan, David T. Jones, M. Sternberg, 2020, Methods in molecular biology.

Phylotranscriptomic Insights into the Diversification of Endothermic Thunnus Tunas

M. Sternberg, V. Savolainen, S. Tracey, 2018, Molecular biology and evolution.

Prediction of the three‐dimensional structures of the nerve growth factor and epidermal growth factor binding proteins (kallikreins) and an hypothetical structure of the high molecular weight complex of epidermal growth factor with its binding protein

M. Sternberg, M. Blaber, B. Bax, 1993, Protein science : a publication of the Protein Society.

Thienopyrimidinone Based Sirtuin-2 (SIRT2)-Selective Inhibitors Bind in the Ligand Induced Selectivity Pocket

M. Sternberg, E. Lam, S. Moniot, 2017, Journal of medicinal chemistry.

The Discovery of a Highly Selective 5,6,7,8‐Tetrahydrobenzo[4,5]thieno[2,3‐d]pyrimidin‐4(3H)‐one SIRT2 Inhibitor that is Neuroprotective in an in vitro Parkinson’s Disease Model

Ian F. Harrison, M. Sternberg, E. Lam, 2015, ChemMedChem.

On the conformation of proteins: towards the prediction of strand arrangements in beta-pleated sheets.

M J Sternberg, J M Thornton, M. Sternberg, 1977, Journal of molecular biology.

Prediction of protein structure from sequence.

M. Sternberg, M. Zvelebil, 1990, European journal of cancer.

Automated identification of protein-ligand interaction features using Inductive Logic Programming: a hexose binding case study

Stephen Muggleton, David Page, Michael J. E. Sternberg, 2012, BMC Bioinformatics.

Specific short transmembrane sequences can inhibit transformation by the mutant neu growth factor receptor in vitro and in vivo.

M. Sternberg, W. Gullick, H. Hurst, 1993, Oncogene.

Evidence That Aspartic Acid 301 Is a Critical Substrate-Contact Residue in the Active Site of Cytochrome P450 2D6 (*)

Michael J. E. Sternberg, Geoffrey T. Tucker, M. Sternberg, 1995, The Journal of Biological Chemistry.

HAD, a data bank of heavy-atom binding sites in protein crystals: a resource for use in multiple isomorphous replacement and anomalous scattering.

M. Sternberg, T. Blundell, S. Islam, 1998, Acta crystallographica. Section D, Biological crystallography.

Application of Inductive Logic Programming toDiscover Rules Explaining ProteinThree-Dimensional

S. Muggleton, M. Sternberg, Turcotte, 1998 .

Computational Resources for Molecular Biology 2022.

M. Sternberg, D. Mathews, R. Casadio, 2022, Journal of molecular biology.

Genetic variation in SCN10A influences cardiac conduction

Mark N. Wass, P. Elliott, M. Sternberg, 2010, Nature Genetics.

A new structural model of the acid-labile subunit: pathogenetic mechanisms of short stature-causing mutations.

M. Sternberg, L. Kelley, A. David, 2012, Journal of molecular endocrinology.

Computation Resources for Molecular Biology: Special Issue 2018.

M. Sternberg, N. Yosef, 2018, Journal of molecular biology.

Sequence analysis ConFunc — functional annotation in the twilight zone

M. Sternberg, M. Wass, 2008 .

Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation

Marcin J. Skwark, Gustavo A. Salazar, Daniel W. A. Buchan, 2019, Nucleic Acids Res..

Multi-class protein fold recognition using large margin logic based divide and conquer learning

S. Muggleton, M. Sternberg, H. Lodhi, 2009, StReBio '09.

Drug Design by Machine Learning

Ashwin Srinivasan, Stephen Muggleton, Ross D. King, 1995, Machine Intelligence 15.

Properties of human genes guided by their enrichment in rare and common variants

M. Sternberg, A. David, L. Leal, 2017, Human mutation.

Bioblox 2.5D - Developing an Educational Game Based on Protein Docking

M. Sternberg, W. Latham, F. Leymarie, 2022, ArXiv.

A predicted three-dimensional structure of human cytochrome P450: implications for substrate specificity.

M. Sternberg, M. Zvelebil, C. Wolf, 1991, Protein engineering.

An analysis of the three-dimensional structure of chicken triose phosphate isomerase.

M. Sternberg, J. Thornton, D. Phillips, 1977, Biochemical Society transactions.

Prediction of ?-turns in proteins using neural network

Malcolm J. McGregor, Michael J. E. Sternberg, T. P. Flores, 1989 .

Structure, function and variants analysis of the androgen-regulated TMPRSS2, a drug target candidate for COVID-19 infection

M. Sternberg, A. David, Tarun Khanna, 2020, bioRxiv.

The flagellum in malarial parasites.

M. Sternberg, M. Wass, R. Sinden, 2010, Current opinion in microbiology.

ePlant: Visualizing and Exploring 1 Multiple Levels of Data for Hypothesis 2 Generation in Plant Biology

Erik S. Ferlanti, M. Sternberg, L. Kelley, 2017 .

Partial protein domains: evolutionary insights and bioinformatics challenges

M. Sternberg, L. Kelley, 2015, Genome Biology.

The fine details of evolution.

M. Sternberg, J. Thornton, R. Laskowski, 2009, Biochemical Society transactions.

Text-Translat ion Al ignment : Three Languages Are Bet ter Than Two *

S. D. Pietra, M. Sternberg, G. Barton, 2002 .

Computation Resources for Molecular Biology: A Special Issue.

M. Sternberg, M. Ostankovitch, 2016, Journal of molecular biology.

A sequence motif in the transmembrane region of growth factor receptors with tyrosine kinase activity mediates dimerization.

M. Sternberg, W. Gullick, 1990, Protein engineering.

Analysis and prediction of the packing of alpha-helices against a beta-sheet in the tertiary structure of globular proteins.

W R Taylor, M J Sternberg, F E Cohen, 1982, Journal of Molecular Biology.

On the use of chemically derived distance constraints in the prediction of protein structure with myoglobin as an example.

M J Sternberg, F E Cohen, M. Sternberg, 1980, Journal of molecular biology.

Analysis of the tertiary structure of protein beta-sheet sandwiches.

W R Taylor, M J Sternberg, F E Cohen, 1981, Journal of Molecular Biology.

Functional assignment of Mycobacterium tuberculosis proteome revealed by genome-scale fold-recognition.

Maulik Shukla, Chunhong Mao, Gérald Larrouy-Maumus, 2013, Tuberculosis.

GWYRE: A Resource for Mapping Variants onto Experimental and Modeled Structures of Human Protein Complexes

Matthew M Copeland, M. Sternberg, I. Vakser, 2022, Journal of molecular biology.

Prediction of the three dimensional structure of activin

M. Sternberg, P. Bates, Jingchu Luo, 1995 .

Prediction of the secondary and tertiary structures of interferon from four homologous amino acid sequences

Michael J. E. Sternberg, Fred E. Cohen, M. Sternberg, 1982 .

PDBe-KB: a community-driven resource for structural and functional annotations

Alfonso Valencia, Karel Berka, Jaroslav Koča, 2019, Nucleic Acids Res..

Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma

Christian Gieger, Yusuke Nakamura, Philippe Froguel, 2011, Nature Genetics.

Electrostatic interactions in globular proteins: calculation of the pH dependence of the redox potential of cytochrome c551.

M. Sternberg, G. Moore, N. K. Rogers, 1985, Journal of molecular biology.

The Phyre2 web portal for protein modeling, prediction and analysis

Michael J E Sternberg, Stefans Mezulis, Lawrence A Kelley, 2015, Nature Protocols.

SAWTED: Structure Assignment With Text Description-Enhanced detection of remote homologues with automated SWISS-PROT annotation comparisons

Michael J. E. Sternberg, Lawrence A. Kelley, Robert M. MacCallum, 2000, Bioinform..

Enhancement of protein modeling by human intervention in applying the automatic programs 3D‐JIGSAW and 3D‐PSSM

M J Sternberg, P A Bates, L A Kelley, 2001, Proteins.

3DLigandSite: predicting ligand-binding sites using similar structures

Michael J. E. Sternberg, Lawrence A. Kelley, Mark N. Wass, 2010, Nucleic Acids Res..

CAPRI: A Critical Assessment of PRedicted Interactions

Sandor Vajda, Michael J E Sternberg, Joël Janin, 2003, Proteins.

Analysis of structural similarities between brain Thy-1 antigen and immunoglobulin domains. Evidence for an evolutionary relationship and a hypothesis for its functional significance.

M. Sternberg, F. Cohen, J. Novotný, 1981, The Biochemical journal.

Genome-wide association study identifies variants in TMPRSS6 associated with hemoglobin levels

Gonçalo Abecasis, Michael J E Sternberg, Yun Li, 2009, Nature Genetics.

Clustering of protein domains in the human genome.

Michael J E Sternberg, David J Balding, M. Sternberg, 2004, Journal of molecular biology.

Landscape of Pleiotropic Proteins Causing Human Disease: Structural and System Biology Insights

Michael J. E. Sternberg, Alessia David, M. Sternberg, 2017, Human mutation.

IGSF10 mutations dysregulate gonadotropin‐releasing hormone neuronal migration resulting in delayed puberty

M. Sternberg, M. Barnes, R. Quinton, 2016, EMBO molecular medicine.

PROMOT: a FORTRAN program to scan protein sequences against a library of known motifs

Michael J. E. Sternberg, M. Sternberg, 1991, Comput. Appl. Biosci..

Analysis and prediction of the packing of α-helices against a β-sheet in the tertiary structure of globular proteins

William R. Taylor, Michael J. E. Sternberg, Fred E. Cohen, 1982 .

Analysis of the tertiary structure of protein β-sheet sandwiches

William R. Taylor, Michael J. E. Sternberg, Fred E. Cohen, 1981 .

Analysis and prediction of protein β-sheet structures by a combinatorial approach

William R. Taylor, Michael J. E. Sternberg, Fred E. Cohen, 1980, Nature.

PML bodies associate specifically with the MHC gene cluster in interphase nuclei.

M J Sternberg, S A Islam, P Sasieni, 2001, Journal of cell science.

Misleading local sequence alignments: implications for comparative protein modelling.

M J Sternberg, M A Saqi, R B Russell, 1998, Protein engineering.

An automated classification of the structure of protein loops.

Baldomero Oliva, Francesc X. Avilés, Enrique Querol, 1997, Journal of molecular biology.

The proteome: structure, function and evolution

Michael J E Sternberg, Florencio Pazos, Robert M MacCallum, 2006, Philosophical Transactions of the Royal Society B: Biological Sciences.

3D-GENOMICS: a database to compare structural and functional annotations of proteins between sequenced genomes

Michael J. E. Sternberg, Robert M. MacCallum, Keiran Fleming, 2004, Nucleic Acids Res..

LGR4 deficiency results in delayed puberty through impaired Wnt/β-catenin signaling

M. Sternberg, M. Barnes, L. Dunkel, 2020, JCI insight.

Proteomic analysis of Plasmodium in the mosquito: progress and pitfalls

M. Sternberg, J. Yates, M. Wass, 2012, Parasitology.

A polygenic biomarker to identify patients with severe hypercholesterolemia of polygenic origin

C. Hoggart, M. Jarvelin, M. Sternberg, 2020, Molecular genetics & genomic medicine.

Identification of disease-associated loci using machine learning for genotype and network data integration

Michael J. E. Sternberg, Ville Karhunen, Minna Männikkö, 2019, Bioinform..

The AlphaFold Database of Protein Structures: A Biologist’s Guide

M. Sternberg, S. Islam, A. David, 2021, Journal of molecular biology.

Identification and analysis of domains in proteins.

M J Sternberg, S A Islam, J Luo, 1995, Protein engineering.

Evolution of enzymes in metabolism: a network perspective.

Michael J E Sternberg, Raphael A G Chaleil, Raphael A. G. Chaleil, 2002, Journal of molecular biology.

Computation Resources for Molecular Biology: Special Issue 2017.

M. Sternberg, M. Ostankovitch, 2017, Journal of molecular biology.

Structure of an XRCC1 BRCT domain: a new protein–protein interaction module

M. Sternberg, P. Bates, P. Freemont, 1998, The EMBO journal.

Integrative top-down system metabolic modeling in experimental disease states via data-driven Bayesian methods.

Michael J E Sternberg, Florencio Pazos, Jung-Wook Bang, 2008, Journal of proteome research.

Structure-based prediction of protein allostery.

Joe G Greener, Joe G. Greener, Michael Je Sternberg, 2018, Current opinion in structural biology.

The identification of similarities between biological networks: application to the metabolome and interactome.

Michael J E Sternberg, Adrian P Cootes, S. Muggleton, 2007, Journal of molecular biology.

Progress in protein structure prediction: assessment of CASP3.

M J Sternberg, P A Bates, L A Kelley, 1999, Current opinion in structural biology.

Analysis of phenetic trees based on metabolic capabilites across the three domains of life.

Enrique Querol, Michael J E Sternberg, Daniel Aguilar, 2004, Journal of molecular biology.

Protein engineering : a practical approach

Michael J. E. Sternberg, Ronald Wetzel, M. Sternberg, 1992 .

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains

Sameer Velankar, James Smith, Daniel W. A. Buchan, 2012, Nucleic Acids Res..

A predicted three‐dimensional structure for the carcinoembryonic antigen (CEA)

M. Sternberg, P. Bates, Jingchu Luo, 1992, FEBS letters.

Search for rare protein altering variants influencing susceptibility to multiple myeloma

Caleb K. Stein, M. Sternberg, G. Morgan, 2017, Oncotarget.

k-SLAM: accurate and ultra-fast taxonomic classification and gene identification for large metagenomic data sets

Sarah A. Butcher, Michael J.E. Sternberg, Come Raczy, 2016, Nucleic acids research.

Conservation of polyproline II helices in homologous proteins: Implications for structure prediction by model building

M. Sternberg, A. Adzhubei, 1994, Protein science : a publication of the Protein Society.

Protein secondary structure prediction using logic-based machine learning

Stephen Muggleton, Michael J. E. Sternberg, Robert King, 1992 .

LOPAL and SCAMP: techniques for the comparison and display of protein structures

Geoffrey J. Barton, Michael J. E. Sternberg, M. Sternberg, 1988 .

Computational Resources for Molecular Biology: Special Issue 2020.

M. Sternberg, B. Lenhard, 2020, Journal of molecular biology.

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

Tapio Salakoski, Paolo Fontana, Silvio C. E. Tosatto, 2016, Genome Biology.

The BRCA1 C-terminal domain: structure and function.

M. Sternberg, P. Bates, P. Freemont, 2000, Mutation research.

CombFunc: predicting protein function using heterogeneous data sources

Michael J. E. Sternberg, Mark N. Wass, Geraint Barton, 2012, Nucleic Acids Res..

Identification of sequence motifs from a set of proteins with related function.

M J Sternberg, M A Saqi, M. Sternberg, 1994, Protein engineering.

Biochemical Knowledge Discovery Using Inductive Logic Programming

Ashwin Srinivasan, Stephen Muggleton, Ross D. King, 1998, Discovery Science.

Theories for Mutagenicity: A Study in First-Order and Feature-Based Induction

Ashwin Srinivasan, Stephen Muggleton, Ross D. King, 1996, Artif. Intell..

Quantitative structure-activity relationships by neural networks and inductive logic programming. I. The inhibition of dihydrofolate reductase by pyrimidines

Jonathan D. Hirst, Ross D. King, Michael J. E. Sternberg, 1994, J. Comput. Aided Mol. Des..

Models of Inhibition in Biological Networks

Stephen Muggleton, Antonis C. Kakas, Alireza Tamaddoni-Nezhad, 2007 .

Functional significance of mutations in the Snf2 domain of ATRX.

M. Sternberg, L. Kelley, D. Higgs, 2011, Human molecular genetics.

A simple method to generate non-trivial alternate alignments of protein sequences.

M J Sternberg, M. Sternberg, M. Saqi, 1991, Journal of molecular biology.

Protein-Protein Docking: Generation and Filtering of Complexes

M J Sternberg, R M Jackson, M. Sternberg, 2000 .

Isolation of a small molecule inhibitor of DNA base excision repair

M. Sternberg, P. Freemont, G. Dianov, 2005, Nucleic acids research.

AlloPred: prediction of allosteric pockets on proteins using normal mode perturbation analysis

Joe G. Greener, M. Sternberg, 2015, BMC Bioinformatics.

Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre

Michael J E Sternberg, Alex D. Herbert, Lawrence A Kelley, 2008, Proteins.

Recognition of remote protein homologies using three-dimensional information to generate a position specific scoring matrix in the program 3D-PSSM

Michael J. E. Sternberg, Lawrence A. Kelley, Robert M. MacCallum, 1999, RECOMB.

A new web resource to predict the impact of missense variants at protein interfaces using 3D structural data: Missense3D-PPI

M. Sternberg, S. Islam, A. David, 2023, bioRxiv.

The Discovery of Novel 10,11-Dihydro-5H-dibenz[b,f]azepine SIRT2 Inhibitors.

M. Sternberg, E. Lam, S. Islam, 2012, MedChemComm.

Genetic loci influencing kidney function and chronic kidney disease

Mark N. Wass, Graham M Lord, P. Elliott, 2010, Nature Genetics.

Synopses from the poster exhibition organized by I. M. Kerr, 1. Interferon: a tertiary structure predicted from amino acid sequences

M. Sternberg, F. Cohen, 1982 .

EMAAS: An extensible grid-based Rich Internet Application for microarray data analysis and management

John Darlington, Michael J. E. Sternberg, Christopher D. Tomlinson, 2008, BMC Bioinformatics.

DSC: public domain protein secondary structure predication

Roger A. Sayle, Ross D. King, Michael J. E. Sternberg, 1997, Comput. Appl. Biosci..

Including Functional Annotations and Extending the Collection of Structural Classifications of Protein Loops (ArchDB)

Baldomero Oliva, Jordi Espadaler, Narcis Fernandez-Fuentes, 2007, Bioinformatics and biology insights.

ArchDB: automated protein loop classification as a tool for structural genomics

Baldomero Oliva, Francesc X. Avilés, Enrique Querol, 2004, Nucleic Acids Res..

Automated discovery of structural signatures of protein fold and function.

M J Sternberg, M Turcotte, S H Muggleton, 2001, Journal of molecular biology.

Recognition of analogous and homologous protein folds--assessment of prediction success and associated alignment accuracy using empirical substitution matrices.

M J Sternberg, P A Bates, R A Sayle, 1998, Protein engineering.

Two new examples of protein structural similarities within the structure-function twilight zone.

M. Sternberg, R. Russell, R. Russell, 1997, Protein engineering.

A novel binding site in catalase is suggested by structural similarity to the calycin superfamily.

M. Sternberg, R. Russell, 1996, Protein engineering.

Dynamic information from protein crystallography. An analysis of temperature factors from refinement of the hen egg-white lysozyme structure.

M. Sternberg, D. Phillips, D. E. Grace, 1979, Journal of molecular biology.

Discovering rules for protein-ligand specificity using support vector inductive logic programming.

Paul J Shrimpton, Michael J E Sternberg, Lawrence A Kelley, 2009, Protein engineering, design & selection : PEDS.

Introduction. Bioinformatics: from molecules to systems

Janet M Thornton, Michael J E Sternberg, David T. Jones, 2006, Philosophical Transactions of the Royal Society B: Biological Sciences.

Model building by comparison at CASP3: Using expert knowledge and computer automation

M J Sternberg, P A Bates, M. Sternberg, 1999, Proteins.

Missense3D-DB web catalogue: an atom-based analysis and repository of 4M human protein-coding genetic variants

M. Sternberg, A. David, Tarun Khanna, 2021, Human Genetics.

Towards an Intelligent System for the Automatic Assignment of Domains in Globular Proteins

Robert B. Russell, Michael J. E. Sternberg, Jingchu Luo, 1995, ISMB.

Comparison of protein structural profiles by interactive computer graphics

Stephen H. Bryant, Michael J. E. Sternberg, M. Sternberg, 1987 .

Three-dimensional structural aspects of the design of new protein molecules

Michael J. E. Sternberg, B. L. Sibanda, Thomas Leon Blundell, 1986, Philosophical Transactions of the Royal Society of London. Series A, Mathematical and Physical Sciences.

Computer-aided design in protein engineering

M. Sternberg, T. Blundell, 1985 .

On the conformation of proteins: hydrophobic ordering of strands in beta-pleated sheets.

M J Sternberg, J M Thornton, M. Sternberg, 1977, Journal of molecular biology.

A relational database of protein structures designed for flexible enquiries about conformation.

M J Sternberg, S A Islam, M. Sternberg, 1989, Protein engineering.

Reasoning about protein topology using the logic programming language PROLOG

Christopher J. Rawlings, William R. Taylor, J Nyakairu, 1985 .

PhyreRisk: A Dynamic Web Application to Bridge Genomics, Proteomics and 3D Structural Data to Guide Interpretation of Human Genetic Variants

Michael J E Sternberg, Ilya A Vakser, Stefans Mezulis, 2019, Journal of molecular biology.

Structural and sequence patterns in the loops of βαβ units

Janet M. Thornton, Michael J. E. Sternberg, M. Sternberg, 1987 .

Prediction of protein structure from amino acid sequence

Janet M. Thornton, Michael J. E. Sternberg, M. Sternberg, 1978, Nature.

Regular representation of irregular charge distributions

Michael J. E. Sternberg, Donald T. Edmonds, M. Sternberg, 1984 .

Electrostatic interactions in globular proteins. Different dielectric models applied to the packing of alpha-helices.

M J Sternberg, M. Sternberg, N. K. Rogers, 1984, Journal of molecular biology.

Scaffold Hopping in Drug Discovery Using Inductive Logic Programming

Stephen Muggleton, Michael J. E. Sternberg, Ata Amini, 2008, J. Chem. Inf. Model..

Crystal structure at 1.95 A resolution of the breast tumour-specific antibody SM3 complexed with its peptide epitope reveals novel hypervariable loop recognition.

M. Sternberg, P. Bates, P. Freemont, 1998, Journal of molecular biology.

PINALOG: a novel approach to align protein interaction networks—implications for complex detection and function prediction

Michael J. E. Sternberg, Hang T. T. Phan, M. Sternberg, 2012, Bioinform..

The Predictive Toxicology Evaluation Challenge

Ashwin Srinivasan, Stephen Muggleton, Ross D. King, 1997, IJCAI.

Prediction of the conformation and geometry of loops in globular proteins: Testing ArchDB, a structural classification of loops

Baldomero Oliva, Enrique Querol, Michael J E Sternberg, 2005, Proteins.

A common TMPRSS2 variant has a protective effect against severe COVID-19

M. Sternberg, J. Casanova, J. Baillie, 2022, Current Research in Translational Medicine.

A three-dimensional molecular template for substrates of human cytochrome P450 involved in debrisoquine 4-hydroxylation.

M J Sternberg, S A Islam, M. Sternberg, 1991, Carcinogenesis.

3DLigandSite: structure-based prediction of protein–ligand binding sites

Mark N. Wass, M. Sternberg, M. Wass, 2022, Nucleic Acids Res..

Sequencing delivers diminishing returns for homology detection: implications for mapping the protein universe

Michael J. E. Sternberg, Lawrence A. Kelley, Benjamin R. Jefferys, 2010, Bioinform..

New algorithm to model protein-protein recognition based on surface complementarity. Applications to antibody-antigen docking.

M J Sternberg, P H Walls, M. Sternberg, 1992, Journal of molecular biology.

Incorporating Virtual Reactions into a Logic-based Ligand-based Virtual Screening Method to Discover New Leads

Stephen H Muggleton, Michael J E Sternberg, Christopher R Reynolds, 2015, Molecular informatics.

Prediction of β-turns in proteins using neural networks

Malcolm J. McGregor, T. P. Flores, Tomas P. Flores, 1989 .

Predictive docking of protein-protein and protein-DNA complexes.

M J Sternberg, R M Jackson, M. Sternberg, 1998, Current opinion in structural biology.

Three dimensional structure of the transmembrane region of the proto‐oncogenic and oncogenic forms of the neu protein.

D. Mulvey, M. Sternberg, I. Campbell, 1992, The EMBO journal.

Model building by comparison: A combination of expert knowledge and computer automation

M J Sternberg, P A Bates, R M Jackson, 1997, Proteins.

Structure Prediction: How good are we?

M. Sternberg, R. Russell, M.J.E. Sternberg, 1995, Current Biology.

Structure-activity relationships derived by machine learning: the use of atoms and their bond connectivities to predict mutagenicity by inductive logic programming.

M J Sternberg, R D King, S H Muggleton, 1996, Proceedings of the National Academy of Sciences of the United States of America.

Application of Inductive Logic Programming to Discover Rules Governing the Three-Dimensional Topology of Protein Structure

Stephen Muggleton, Michael J. E. Sternberg, Marcel Turcotte, 1998, ILP.

A general approach for developing system‐specific functions to score protein–ligand docked complexes using support vector inductive logic programming

Ata Amini, Paul J Shrimpton, Stephen H Muggleton, 2007, Proteins.

A Novel Logic-Based Approach for Quantitative Toxicology Prediction

Stephen Muggleton, Michael J. E. Sternberg, Huma Lodhi, 2007, J. Chem. Inf. Model..

Support Vector Inductive Logic Programming

Stephen Muggleton, Michael J. E. Sternberg, Huma Lodhi, 2005, Discovery Science.

The Effect of Relational Background Knowledge on Learning of Protein Three-Dimensional Fold Signatures

Stephen Muggleton, Michael J. E. Sternberg, Marcel Turcotte, 2001, Machine Learning.

The automatic discovery of structural principles describing protein fold space.

Stephen H Muggleton, Michael J E Sternberg, Adrian P Cootes, 2003, Journal of molecular biology.

Generating Protein Three-dimensional Fold Signatures using Inductive Logic Programming

Stephen Muggleton, Michael J. E. Sternberg, Marcel Turcotte, 2001, Comput. Chem..

Analysis and predication of structural motifs in the glycolytic enzymes.

M. Sternberg, F. Cohen, W. Taylor, 1981, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

Annotation and curation of human genomic variations: an ELIXIR Implementation Study

Marcella Attimonelli, Fiona Cunningham, Roberto Preste, 2020, F1000Research.

Modelling repressor proteins docking to DNA

M J Sternberg, M. Sternberg, P. Aloy, 1998, Proteins.

Capturing expert knowledge with argumentation: a case study in bioinformatics

John Fox, Marek J. Sergot, Michael J. E. Sternberg, 2006, Bioinform..

Support vector inductive logic programming outperforms the naive Bayes classifier and inductive logic programming for the classification of bioactive chemical compounds

Stephen Muggleton, Andreas Bender, Robert C. Glen, 2007, J. Comput. Aided Mol. Des..

EzMol: A Web Server Wizard for the Rapid Visualization and Image Production of Protein and Nucleic Acid Structures

Suhail A. Islam, Michael J.E. Sternberg, Christopher R. Reynolds, 2018, Journal of molecular biology.

The SARS-CoV-2 infection in Thailand: analysis of spike variants complemented by protein structure insights

M. Sternberg, A. David, Sirawit Ittisoponpisan, 2022, bioRxiv.

An analysis of the structure of triose phosphate isomerase and its comparison with lactate dehydrogenase.

M. Sternberg, J. Thornton, D. Phillips, 1978, Journal of molecular biology.

Application of docking methodologies to modeled proteins.

Ilya A Vakser, Taras Dauzhenka, Petras J Kundrotas, 2020, Proteins.

Application of scaled particle theory to model the hydrophobic effect: implications for molecular association and protein stability.

M J Sternberg, R M Jackson, M. Sternberg, 1994, Protein engineering.

A molecular model for the enzyme cytochrome P45017α, a major target for the chemotherapy of prostatic cancer

Stephen Neidle, C. A. Laughton, M. Sternberg, 1990 .

A combinational approach to the prediction of the tertiary fold of globular proteins.

M. Sternberg, F. Cohen, W. Taylor, 1982, Biochemical Society transactions.

Prediction of viable circular permutants using a graph theoretic approach

Michael Lappe, Michael J. E. Sternberg, Konrad H. Paszkiewicz, 2006, Bioinform..

AMBIENT: Active Modules for Bipartite Networks - using high-throughput transcriptomic data to dissect metabolic response

Michael J. E. Sternberg, William A. Bryant, John W. Pinney, 2013, BMC Systems Biology.

Systems analysis of bacterial glycomes.

S. Muggleton, M. Sternberg, Alireza Tamaddoni-Nezhad, 2010, Biochemical Society transactions.

Empirical scale of side-chain conformational entropy in protein folding.

M J Sternberg, S D Pickett, M. Sternberg, 1993, Journal of molecular biology.

3D-Garden: a system for modelling protein-protein complexes based on conformational refinement of ensembles generated with the marching cubes algorithm

Michael J. E. Sternberg, Victor I. Lesk, M. Sternberg, 2008, Bioinform..

Machine learning approach for the prediction of protein secondary structure.

M J Sternberg, R D King, M. Sternberg, 1990, Journal of molecular biology.

FoldSynth: Interactive 2D/3D Visualisation Platform for Molecular Strands

Stephen Todd, Stephen Taylor, Michael J. E. Sternberg, 2015, VCBM.

Missense3D-PPI: A Web Resource to Predict the Impact of Missense Variants at Protein Interfaces Using 3D Structural Data.

M. Sternberg, S. Islam, A. David, 2023, Journal of molecular biology.

PhyreStorm: A Web Server for Fast Structural Searches Against the PDB

Michael J E Sternberg, Stefans Mezulis, Lawrence A Kelley, 2015, Journal of molecular biology.

ConFunc - functional annotation in the twilight zone

Michael J. E. Sternberg, Mark N. Wass, M. Sternberg, 2008, Bioinform..

Chemical synthesis, structural modeling, and biological activity of the epidermal growth factor-like domain of human cripto.

M. Sternberg, M. Desantis, P. Harrison, 1997, Biochemistry.

Can a simple function for the dielectric response model electrostatic effects in globular proteins?

M. Sternberg, A. Fersht, 1989, Protein engineering.

Multi-class Prediction Using Stochastic Logic Programs

Stephen Muggleton, Michael J. E. Sternberg, Lawrence A. Kelley, 2007, ILP.

Protein structure-based evaluation of missense variants: Resources, challenges and future directions.

M. Sternberg, A. David, 2023, Current opinion in structural biology.

Assessment of a rule-based virtual screening technology (INDDEx) on a benchmark data set.

Stephen H Muggleton, Michael J E Sternberg, Christopher R Reynolds, 2012, The journal of physical chemistry. B.

A new structural model of the acid-labile subunit: pathogenetic mechanisms of short stature-causing mutations.

M. Sternberg, L. Kelley, A. David, 2012, Journal of molecular endocrinology.

Predicting the Sub-Cellular Location of Proteins from Text Using Support Vector Machines

Michael J. E. Sternberg, Lawrence A. Kelley, B. J. Stapley, 2001, Pacific Symposium on Biocomputing.

PhenoRank: reducing study bias in gene prioritization through simulation

Michael J. E. Sternberg, Alex J. Cornish, Alessia David, 2018, Bioinform..

Predicting the Sub-Cellular Location of Proteins from Text Using Support Vector Machines

M. Sternberg, L. Kelley, Benjamin J. Stapley, 2001, Pacific Symposium on Biocomputing.

On the conformation of proteins: the handedness of the beta-strand-alpha-helix-beta-strand unit.

M J Sternberg, J M Thornton, M. Sternberg, 1976, Journal of molecular biology.

Multi-Class protein fold recognition using large margin logic based divide and conquer learning

Stephen Muggleton, Michael J. E. Sternberg, Huma Lodhi, 2010, SKDD.

Relating chemical activity to structure: An examination of ILP successes

Ashwin Srinivasan, Ross D. King, Michael J. E. Sternberg, 1995, New Generation Computing.

Support Vector Inductive Logic Programming

S. Muggleton, M. Sternberg, H. Lodhi, 2005, Discovery Science.

Evaluation of the 3D‐Dock protein docking suite in rounds 1 and 2 of the CAPRI blind trial

Michael J E Sternberg, Graham R Smith, M. Sternberg, 2003, Proteins.

The Aquila Digital Community The Aquila Digital Community

Silvio C. E. Tosatto, Karin M. Verspoor, David A. Lee, 2022 .

AlloPred: prediction of allosteric pockets on proteins using normal mode perturbation analysis

Michael Sternberg, Joe G. Greener, M. Sternberg, 2015, BMC Bioinformatics.

Protein Structure Prediction: A Practical Approach

M. Sternberg, 1997 .

A diffusion–collision–adhesion model for the kinetics of myoglobin refolding

M. Sternberg, F. Cohen, P. Kollman, 1980, Nature.