Lin Fan

发表

Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data

N. Friedman, M. Grabherr, B. Haas, 2011, Nature Biotechnology.

Ab initio reconstruction of transcriptomes of pluripotent and lineage committed cells reveals gene structures of thousands of lincRNAs

J. Rinn, J. Levin, X. Adiconis, 2010, Nature biotechnology.

Ab initio reconstruction of transcriptomes of pluripotent and lineage committed cells reveals gene structures of thousands of lincRNAs

J. Rinn, J. Levin, X. Adiconis, 2010, Nature Biotechnology.

Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts

Brad T. Sherman, Robert M. Stephens, Christina A. Cuomo, 2016, Nature Communications.

Analysis of the African coelacanth genome sheds light on tetrapod evolution

Sonja J. Prohaska, Bronwen L. Aken, J. Levin, 2013, Nature.

Genomics of Loa loa, a Wolbachia-free filarial parasite of humans

Jeremy Zucker, Julie C. Dunning Hotopp, Qiandong Zeng, 2013, Nature Genetics.

Comparative Functional Genomics of the Fission Yeasts

Manolis Kellis, Nir Friedman, Hanah Margalit, 2011, Science.

Trinity : reconstructing a full-length transcriptome without a genome from RNA-Seq data

N. Friedman, M. Grabherr, B. Haas, 2016 .

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.

Michael F. Lin, J. Rinn, J. Levin, 2012, Genome research.

Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells

N. Friedman, J. Levin, I. Amit, 2011, Nature Biotechnology.

Microsporidian genome analysis reveals evolutionary strategies for obligate intracellular growth

Christina A. Cuomo, David I Heiman, J. Levin, 2012, Genome research.

Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome

Vivek Krishnakumar, Michalis Hadjithomas, Cédric Feschotte, 2016, eLife.

Transcriptomic Characterization of SF3B1 Mutation Reveals Its Pleiotropic Effects in Chronic Lymphocytic Leukemia.

Jon C. Aster, Donna Neuberg, Angela N. Brooks, 2016, Cancer cell.

The evolution, evolvability and engineering of gene regulatory DNA

Francisco A. Cubillos, Carl G. de Boer, M. Yassour, 2022, Nature.

A comprehensive fitness landscape model reveals the evolutionary history and future evolvability of eukaryotic cis-regulatory DNA sequences

Francisco A. Cubillos, Carl G. de Boer, M. Yassour, 2021, bioRxiv.

Distinctive Expansion of Potential Virulence Genes in the Genome of the Oomycete Fish Pathogen Saprolegnia parasitica

B. Snel, B. Haas, J. Levin, 2013, PLoS genetics.

during zebrafish embryogenesis Systematic identification of long noncoding RNAs expressed Material

Michael F. Lin, J. Rinn, J. Levin, 2012 .

Transcriptomic Characterization of SF 3 B 1 Mutation Reveals Its Pleiotropic Effects in Chronic Lymphocytic Leukemia

Angela N. Brooks, Shuqiang Li, K. Livak, 2016 .

The African coelacanth genome provides insights into tetrapod evolution

Eric S. Lander, Sonja J. Prohaska, Peter F. Stadler, 2013 .

Comparative Analysis Highlights Variable Genome Content of Wheat Rusts and Divergence of the Mating Loci

Christina A. Cuomo, J. Levin, X. Adiconis, 2016, G3: Genes, Genomes, Genetics.

Genome Sequences of Three Phytopathogenic Species of the Magnaporthaceae Family of Fungi

B. Haas, J. Levin, X. Adiconis, 2015, G3: Genes, Genomes, Genetics.

RNA-Seq methods for imperfect samples: development, evaluation and applications

A. Sivachenko, J. Levin, X. Adiconis, 2011, Genome Biology.

during zebrafish embryogenesis Systematic identification of long noncoding RNAs expressed Material Supplemental

Michael F. Lin, J. Rinn, J. Levin, 2012 .

Comparative Functional Genomics of the Fission Yeasts

Ryan J. Yoder, Michael F. Lin, Carolin A. Müller, 2011 .

Genomics of Loa loa, a Wolbachia-free filarial parasite of humans

B. Haas, J. Levin, Lin Fan, 2013, Nature Genetics.