Y. Nakamura

发表

Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA. A primitive form of plant mitochondrial genome.

K. Oda, K. Yamato, E. Ohta, 1992, Journal of molecular biology.

Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions (supplement).

Y. Nakamura, N. Miyajima, M. Hirosawa, 1996, DNA research : an international journal for rapid publication of reports on genes and genomes.

Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions.

Sayaka, Y. Nakamura, N. Miyajima, 1996, DNA research : an international journal for rapid publication of reports on genes and genomes.

Glutamine synthetase gene expression at elevated hydrostatic pressure in a deep-sea piezophilic Shewanella violacea.

Y. Nakamura, K. Horikoshi, K. Nakasone, 2000, FEMS microbiology letters.

An Escherichia coli protein that exhibits phosphohistidine phosphatase activity towards the HPt domain of the ArcB sensor involved in the multistep His‐Asp phosphorelay

Y. Nakamura, T. Mizuno, M. Matsubara, 1998, Molecular microbiology.

Localization of nusA-suppressing amino acid substitutions in the conserved regions of the beta' subunit of Escherichia coli RNA polymerase.

Y. Nakamura, K. Ito, 1996, Molecular & general genetics : MGG.

Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis.

Y. Nakamura, S. Kuhara, N. Ogasawara, 2000, Nucleic acids research.

Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti.

Y. Nakamura, S. Tabata, Yasukazu Nakamura, 2000, DNA research : an international journal for rapid publication of reports on genes and genomes.

Mapping of a gene responsible for the difference in amylopectin structure between japonica-type and indica-type rice varieties

Y. Nakamura, M. Yano, H. Satoh, 2002, Theoretical and Applied Genetics.

Transient regulation of protein synthesis in Escherichia coli upon shift-up of growth temperature

Y. Nakamura, T. Yamamori, K. Ito, 1978, Journal of bacteriology.

Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120.

Y. Nakamura, S. Tabata, Yasukazu Nakamura, 2001, DNA research : an international journal for rapid publication of reports on genes and genomes.

Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.

K Mayer, N Terryn, Y. Nakamura, 2000, Nature.

Chromosomal location of a structural gene for the RNA polymerase sigma factor in Escherichia coli.

Y. Nakamura, T. Osawa, T. Yura, 1977, Proceedings of the National Academy of Sciences of the United States of America.

Genetic interaction between the beta' subunit of RNA polymerase and the arginine-rich domain of Escherichia coli nusA protein

Y. Nakamura, K. Ito, K. Egawa, 1991, Journal of bacteriology.

Overproduction and purification of lysyl-tRNA synthetase encoded by the herC gene of E coli.

Y. Nakamura, K. Kawakami, 1992, Biochimie.

Control and function of lysyl‐tRNA synthetases: diversity and co‐ordination

Y. Nakamura, Koichi Ito, Yoshikazu Nakamura, 1993, Molecular microbiology.

In vivo evidence that the nusA and infB genes of E. coli are part of the same multi‐gene operon which encodes at least four proteins.

Y. Nakamura, Y Nakamura, S Mizusawa, 1985, The EMBO journal.

Murine monoclonal antibodies which recognize active sites of Escherichia coli NusA protein and epitope mapping by gene fusion.

Y. Nakamura, D. Court, S. Showalter, 1989, Gene.

nusA amber mutation that causes temperature-sensitive growth of Escherichia coli

Y. Nakamura, D. Court, A. Tsugawa, 1988, Journal of bacteriology.

Regulatory defects of a conditionally lethal nusAts mutant of Escherichia coli. Positive and negative modulator roles of NusA protein in vivo.

Y. Nakamura, D. Court, S. Mizusawa, 1986, Journal of molecular biology.

Chapter 13 - Mutagenesis and transformation of starch biosynthesis of rice and the production of novel starches

Y. Nakamura, 2014 .

Autogenous suppression of an opal mutation in the gene encoding peptide chain release factor 2.

Y. Nakamura, Y. Nakamura, K. Kawakami, 1990, Proceedings of the National Academy of Sciences of the United States of America.

Significant differences in the frequency of transcriptional units, types and numbers of repetitive elements, GC content, and the number of CpG islands between a 1010-kb G-band genomic segment on chromosome 9q31.3 and a 1200-kb R-band genomic segment on chromosome 3p21.3.

Y. Nakamura, Y. Yamane, I. Uchiyama, 1999, DNA research : an international journal for rapid publication of reports on genes and genomes.

Characterization of a 1200-kb genomic segment of chromosome 3p22-p21.3.

Y. Nakamura, S. Ishikawa, Y. Yamane, 1999, DNA research : an international journal for rapid publication of reports on genes and genomes.

Linkage localization of the starch branching enzyme I (Q-enzyme I) gene in rice

Y. Nakamura, Y. Nagamura, N. Kurata, 1994, Theoretical and Applied Genetics.

Role of the putative membrane-bound endo-1,4-beta-glucanase KORRIGAN in cell elongation and cellulose synthesis in Arabidopsis thaliana.

Y. Nakamura, D. Shibata, S. Tabata, 2001, Plant & cell physiology.

Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence features of the regions of 3,076,755 bp covered by sixty P1 and TAC clones.

Y. Nakamura, S. Tabata, T. Kaneko, 2000, DNA research : an international journal for rapid publication of reports on genes and genomes.

Gene organization of human NOTCH4 and (CTG)n polymorphism in this human counterpart gene of mouse proto-oncogene Int3.

Y. Nakamura, T. Ikemura, K. Mita, 1997, Gene.

Overexpression and purification of recombinant eRF1 proteins of rabbit and Tetrahymena thermophila.

Y. Nakamura, S. Matsufuji, K. Ito, 1999, Biochemistry. Biokhimiia.

Amber (UAG) suppressors affected in UGA/UAA‐specific polypeptide release factor 2 of bacteria: genetic prediction of initial binding to ribosome preceding stop codon recognition

Y. Nakamura, Koichi Ito, Yoshikazu Nakamura, 1999, Genes to cells : devoted to molecular & cellular mechanisms.

Cloning and overexpression of polypeptide release factor 1 of Thermus thermophilus.

Y. Nakamura, K. Ito, 1997, Biochimie.

Effects of rifampicin resistant rpoB mutations on antitermination and interaction with nusA in Escherichia coli.

Y. Nakamura, C. Gross, W. Walter, 1988, Journal of molecular biology.

Chromosomal location and structure of the operon encoding peptide-chain-release factor 2 of Escherichia coli.

Y. Nakamura, G. Björk, K. Kawakami, 1988, Proceedings of the National Academy of Sciences of the United States of America.

The sugary-type isoamylase gene from rice and Aegilops tauschii: characterization and comparison with maize and arabidopsis.

Y. Nakamura, M. Yamamoto, M. Morell, 2003, Genome.

Genomic DNA sequence of a rice gene coding for a pullulanase-type of starch debranching enzyme.

Y. Nakamura, N. Ogata, H. Yamanouchi, 1998, Biochimica et biophysica acta.

Biochemical and genetic analysis of the effects of amylose-extender mutation in rice endosperm.

Y. Nakamura, Yasunori Nakamura, H. Satoh, 2001, Plant physiology.

Growth complementation of influenza virus temperature-sensitive mutants in mouse cells which express the RNA polymerase and nucleoprotein genes.

Y. Nakamura, K. Oda, S. Nakada, 1991, Journal of biochemistry.

Pleiotropic effects of the rpoC10 mutation affecting the RNA polymerase β′ subunit of Escherichia coli on factor‐dependent transcription termination and antitermination

Y. Nakamura, Koichi Ito, Yoshikazu Nakamura, 1993, Molecular microbiology.

Codon-anticodon assignment and detection of codon usage trends in seven microbial genomes.

Y. Nakamura, S. Tabata, S Tabata, 1997, Microbial & comparative genomics.

2 . 10 Evolution of Organellar Genomes

Naoko, K. Oda, K. Yamato, 2022 .

Altered translation initiation factor 2 in the cold‐sensitive ssyG mutant affects protein export in Escherichia coli.

Y. Nakamura, M. Grunberg‐Manago, K. Shiba, 1986, EMBO Journal.

Structural and Functional Genome Analysis of Lotus japonicus and Mesorhizobium loti

Y. Nakamura, S. Tabata, Tomohiko Kato, 2005 .

Localization ofnusA-suppressing amino acid substitutions in the conserved regions of theβ′ subunit ofEscherichia coli RNA polymerase

Y. Nakamura, K. Ito, 1996, Molecular and General Genetics MGG.

Utility of mitochondrial‐encoded cytochrome c oxidase I gene for phylogenetic analysis and species identification of the planktonic diatom genus Skeletonema

Y. Nakamura, Kazuya Takahashi, M. Iwataki, 2017 .

Monitoring of methyl jasmonate-responsive genes in Arabidopsis by cDNA macroarray: self-activation of jasmonic acid biosynthesis and crosstalk with other phytohormone signaling pathways.

Y. Nakamura, D. Shibata, S. Tabata, 2001, DNA research : an international journal for rapid publication of reports on genes and genomes.

Structural analysis of a Lotus japonicus genome. I. Sequence features and mapping of fifty-six TAC clones which cover the 5.4 mb regions of the genome.

Y. Nakamura, S. Tabata, Yasukazu Nakamura, 2001, DNA research : an international journal for rapid publication of reports on genes and genomes.

Induction of sigma factor synthesis in Escherichia coli by the N gene product of bacteriophage lambda.

Y. Nakamura, T. Yura, 1976, Proceedings of the National Academy of Sciences of the United States of America.

Evidence for a positive regulation of RNA polymerase synthesis in Escherichia coli.

Y. Nakamura, T. Yura, Yoshikazu Nakamura, 1975, Journal of molecular biology.

SecY, a multispanning integral membrane protein, contains a potential leader peptidase cleavage site

Y. Nakamura, T. Inada, Koreaki Ito, 1990, Journal of bacteriology.

Loss of overproduction of polypeptide release factor 3 influences expression of the tryptophanase operon of Escherichia coli

Y. Nakamura, C. Yanofsky, V. Horn, 1996, Journal of bacteriology.

Conditionally lethal amber mutations in the leader peptidase gene of Escherichia coli

Y. Nakamura, D. Court, T. Inada, 1989, Journal of bacteriology.

Effect of a bifunctional imidoester on dissociation of 70S ribosomes in Escherichia coli.

Y. Nakamura, A. Wada, 1973, Biochemical and biophysical research communications.

C-terminal interaction of translational release factors eRF1 and eRF3 of fission yeast: G-domain uncoupled binding and the role of conserved amino acids.

Y. Nakamura, Yoshikazu Nakamura, Kanae Ebihara, 1999, RNA.

The stretch of C-terminal acidic amino acids of translational release factor eRF1 is a primary binding site for eRF3 of fission yeast.

Y. Nakamura, Koichi Ito, Yoshikazu Nakamura, 1998, RNA.

Escherichia coli release factor 3: resolving the paradox of a typical G protein structure and atypical function with guanine nucleotides.

Y. Nakamura, W. Tate, H. Pel, 1998, RNA.

Conserved motifs in prokaryotic and eukaryotic polypeptide release factors: tRNA-protein mimicry hypothesis.

Y. Nakamura, M. Uno, Koichi Ito, 1996, Proceedings of the National Academy of Sciences of the United States of America.

Identification of the prfC gene, which encodes peptide-chain-release factor 3 of Escherichia coli.

Y. Nakamura, W. Tate, J. Moffat, 1994, Proceedings of the National Academy of Sciences of the United States of America.

Sequence and functional analysis of mutations in the gene encoding peptide-chain-release factor 2 of Escherichia coli.

Y. Nakamura, K. Kawakami, O. Mikuni, 1991, Biochimie.

Single amino acid substitution in prokaryote polypeptide release factor 2 permits it to terminate translation at all three stop codons.

Y. Nakamura, M. Uno, Koichi Ito, 1998, Proceedings of the National Academy of Sciences of the United States of America.

Human pseudoautosomal boundary-like sequences: expression and involvement in evolutionary formation of the present-day pseudoautosomal boundary of human sex chromosomes.

Y. Nakamura, N. Saitou, T. Ikemura, 1996, Human molecular genetics.

A rare tRNA-Arg(CCU) that regulates Ty1 element ribosomal frameshifting is essential for Ty1 retrotransposition in Saccharomyces cerevisiae.

Y. Nakamura, J. Boeke, D. Garfinkel, 1993, Genetics.

Indirect regulation of translational termination efficiency at highly expressed genes and recoding sites by the factor recycling function of Escherichia coli release factor RF3

W P Tate, Y. Nakamura, W. Tate, 1999, The EMBO journal.

Comparative characterization of release factor RF-3 genes of Escherichia coli, Salmonella typhimurium, and Dichelobacter nodosus

Y. Nakamura, K. Ito, K. Matsumura, 1995, Journal of bacteriology.

Autoregulation of RNase III operon by mRNA processing.

Y. Nakamura, D. Court, M. Grunberg‐Manago, 1989, The EMBO journal.

Conditionally lethal and recessive UGA-suppressor mutations in the prfB gene encoding peptide chain release factor 2 of Escherichia coli

Y. Nakamura, T. Inada, K. Kawakami, 1988, Journal of bacteriology.

Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti (supplement).

Y. Nakamura, S. Tabata, Yasukazu Nakamura, 2000, DNA research : an international journal for rapid publication of reports on genes and genomes.

Generation of 7137 non-redundant expressed sequence tags from a legume, Lotus japonicus.

Y. Nakamura, S. Tabata, S. Sato, 2000, DNA research : an international journal for rapid publication of reports on genes and genomes.

Generation of 10,154 expressed sequence tags from a leafy gametophyte of a marine red alga, Porphyra yezoensis.

Y. Nakamura, S. Tabata, Yasukazu Nakamura, 2000, DNA research : an international journal for rapid publication of reports on genes and genomes.

A large scale analysis of cDNA in Arabidopsis thaliana: generation of 12,028 non-redundant expressed sequence tags from normalized and size-selected cDNA libraries.

Y. Nakamura, S. Tabata, Yasukazu Nakamura, 2000, DNA research : an international journal for rapid publication of reports on genes and genomes.

Regulation of translation termination: conserved structural motifs in bacterial and eukaryotic polypeptide release factors.

Y. Nakamura, K. Ito, Y. Kawazu, 1995, Biochemistry and cell biology = Biochimie et biologie cellulaire.

Ty element-induced temperature-sensitive mutations of Saccharomyces cerevisiae.

Y. Nakamura, D. Garfinkel, B. Shafer, 1992, Genetics.

Molecular cloning and sequence of theBacillus stearothermophilus translational initiation factor IF2 gene

Y. Nakamura, C. Gualerzi, C. Pon, 1986, Molecular and General Genetics MGG.

Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.

W Ansorge, H Erfle, G Kauer, 2000, Nature.

Functional specificity of amino acid at position 246 in the tRNA mimicry domain of bacterial release factor 2.

Y. Nakamura, M. Uno, K. Ito, 1996, Biochimie.

Transfer RNA genes in the mitochondrial genome from a liverwort, Marchantia polymorpha: the absence of chloroplast-like tRNAs.

K. Oda, K. Yamato, E. Ohta, 1992, Nucleic acids research.

The nucleotide sequence of the cloned nusA gene and its flanking region of Escherichia coli.

Y. Nakamura, S. Ishii, F. Imamoto, 1984, Nucleic acids research.

Escherichia coli proteins involved in regulation of transcription termination: function, structure, and expression of the nusA and nusB genes.

Y. Nakamura, F. Imamoto, Yoshikazu Nakamura, 1986, Advances in biophysics.

High pressure represses expression of the malB operon in Escherichia coli.

Y. Nakamura, T. Sato, K. Horikoshi, 1996, FEMS microbiology letters.

Functional mapping of ribosome-contact sites in the ribosome recycling factor: a structural view from a tRNA mimic.

Y. Nakamura, T. Fujiwara, K. Ito, 2001, RNA.

Transient regulation of protein synthesis in Escherichia coli upon shift-up of growth temperature

Y. Nakamura, T. Yamamori, Koreaki Ito, 1978, Journal of bacteriology.

Generation of expressed sequence tags from low-CO2 and high-CO2 adapted cells of Chlamydomonas reinhardtii.

Y. Nakamura, K. Ohyama, H. Fukuzawa, 2000, DNA research : an international journal for rapid publication of reports on genes and genomes.

Genome Analysis of a Flowering Plant, Arabidopsis thaliana

Y. Nakamura, S. Tabata, Tomohiko Kato, 2003 .

Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones.

Y. Nakamura, S. Tabata, T. Kaneko, 2000, DNA research : an international journal for rapid publication of reports on genes and genomes.

Complete structure of the chloroplast genome of Arabidopsis thaliana.

Y. Nakamura, S. Tabata, Yasukazu Nakamura, 1999, DNA research : an international journal for rapid publication of reports on genes and genomes.

Structural analysis of Arabidopsis thaliana chromosome 5. IX. Sequence features of the regions of 1,011,550 bp covered by seventeen P1 and TAC clones.

Y. Nakamura, N. Miyajima, S. Tabata, 1999, DNA research : an international journal for rapid publication of reports on genes and genomes.

Structural analysis of Arabidopsis thaliana chromosome 5. V. Sequence features of the regions of 1,381,565 bp covered by twenty one physically assigned P1 and TAC clones.

Y. Nakamura, N. Miyajima, S. Tabata, 1998, DNA research : an international journal for rapid publication of reports on genes and genomes.

Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence features of the regions of 1,456,315 bp covered by nineteen physically assigned P1 and TAC clones.

Y. Nakamura, N. Miyajima, S. Tabata, 1998, DNA research : an international journal for rapid publication of reports on genes and genomes.

Structural analysis of Arabidopsis thaliana chromosome 5. II. Sequence features of the regions of 1,044,062 bp covered by thirteen physically assigned P1 clones.

Y. Nakamura, N. Miyajima, S. Tabata, 1997, DNA research : an international journal for rapid publication of reports on genes and genomes.

Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence features of the 1.6 Mb regions covered by twenty physically assigned P1 clones.

Y. Nakamura, N. Miyajima, S. Tabata, 1997, DNA research : an international journal for rapid publication of reports on genes and genomes.

Structural analysis of Arabidopsis thaliana chromosome 5. III. Sequence features of the regions of 1,191,918 bp covered by seventeen physically assigned P1 clones.

Y. Nakamura, N. Miyajima, S. Tabata, 1997, DNA research : an international journal for rapid publication of reports on genes and genomes.

Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence features of the regions of 1,367,185 bp covered by 19 physically assigned P1 and TAC clones.

Y. Nakamura, N. Miyajima, S. Tabata, 1998, DNA research : an international journal for rapid publication of reports on genes and genomes.

A large scale structural analysis of cDNAs in a unicellular green alga, Chlamydomonas reinhardtii. I. Generation of 3433 non-redundant expressed sequence tags.

Y. Nakamura, H. Fukuzawa, S. Tabata, 1999, DNA research : an international journal for rapid publication of reports on genes and genomes.

Complete structure of the chloroplast genome of a legume, Lotus japonicus.

Y. Nakamura, S. Tabata, T. Kaneko, 2000, DNA Research.

Structural analysis of Arabidopsis thaliana chromosome 5. VIII. Sequence features of the regions of 1,081,958 bp covered by seventeen physically assigned P1 and TAC clones.

Y. Nakamura, N. Miyajima, S. Tabata, 1998, DNA research : an international journal for rapid publication of reports on genes and genomes.

Group I introns in the liverwort mitochondrial genome: the gene coding for subunit 1 of cytochrome oxidase shares five intron positions with its fungal counterparts.

K. Oda, K. Yamato, E. Ohta, 1993, Nucleic acids research.

Differential regulation of two genes encoding lysyl‐tRNA synthetases in Escherichia coli: lysU‐constitutive mutations compensate for a lysS null mutation

Y. Nakamura, Koreaki Ito, Yoshikazu Nakamura, 1992, Molecular microbiology.

Effect of NusA protein on expression of the nusA,infB operon in E. coli.

Y. Nakamura, M. Grunberg‐Manago, J. Plumbridge, 1985, Nucleic acids research.

Evidence for autoregulation of the nusA-infB operon of Escherichia coli.

Y. Nakamura, M. Grunberg‐Manago, J. Plumbridge, 1985, Gene.

Arginine regulon of Escherichia coli K-12. A study of repressor-operator interactions and of in vitro binding affinities versus in vivo repression.

Y. Nakamura, N. Glansdorff, A. Piérard, 1992, Journal of molecular biology.

Regulation of basal level expression of the tryptophan operon of Escherichia coli.

Y. Nakamura, C. Yanofsky, J. R. Roesser, 1989, The Journal of biological chemistry.

Influence of Bacillus subtilis C-3102 on microbiota in a dynamic in vitro model of the gastrointestinal tract simulating human conditions.

Y. Nakamura, K. Venema, A. Maathuis, 2012, Beneficial microbes.

Nucleotide sequence of a cDNA encoding starch-branching enzyme, or q-enzyme I, from rice endosperm.

Y. Nakamura, H. Yamanouchi, Yasunori Nakamura, 1992, Plant physiology.

Sequence analysis of a 685-kb genomic region on chromosome 3p22-p21.3 that is homozygously deleted in a lung carcinoma cell line.

Y. Nakamura, M. Ogawa, Y. Takei, 1997, DNA research : an international journal for rapid publication of reports on genes and genomes.

Localization of the structural gene for the ' subunit of RNA polymerase in Escherichia coli.

Y. Nakamura, T. Yura, T. Yura, 1973, Biochemical and biophysical research communications.

Comprehensive cloning of Schizosaccharomyces pombe genes encoding translation elongation factors.

Y. Nakamura, K. Mita, K. Ito, 1997, Gene.

Gene encoding a putative zinc finger protein in Synechocystis PCC6803.

K. Oda, Y. Nakamura, M. Takemura, 1991, Agricultural and biological chemistry.

Gene clusters for ribosomal proteins in the mitochondrial genome of a liverwort, Marchantia polymorpha.

K. Oda, K. Yamato, E. Ohta, 1992, Nucleic acids research.

Sequence analysis of a total of three megabases of DNA in two regions of chromosome 8p.

Y. Nakamura, K. Kitami, S. Ikegawa, 1999, DNA research : an international journal for rapid publication of reports on genes and genomes.

Properties of peptide chain release factor 2 from Streptomyces coelicolor A3(2): conserved primary structure but no frameshift regulation

Y. Nakamura, H. Ogawara, H. Urabe, 1995, Journal of bacteriology.