S. Rackovsky

发表

Effects of compact volume and chain stiffness on the conformations of native proteins.

M. Hao, S. Rackovsky, A. Liwo, 1992, Proceedings of the National Academy of Sciences of the United States of America.

Characterization of multiple bends in proteins

S. Rackovsky, H. Scheraga, Y. Isogai, 1980, Biopolymers.

Differential Geometry and Polymer Conformation. 1. Comparison of Protein Conformations1a,b

S. Rackovsky, H. Scheraga, 1978 .

Differential geometry and polymer conformation. 4. Conformational and nucleation properties of individual amino acids

S. Rackovsky, H. Scheraga, 1982 .

Optimally informative backbone structural propensities in proteins

S. Rackovsky, A. Solis, 2002, Proteins.

Empirical Studies of Hydrophobicity. 1. Effect of Protein Size on the Hydrophobic Behavior of Amino Acids

S. Rackovsky, H. Scheraga, H. Meirovitch, 1980 .

Hydrophobicity, hydrophilicity, and the radial and orientational distributions of residues in native proteins.

S. Rackovsky, H. Scheraga, 1977, Proceedings of the National Academy of Sciences of the United States of America.

Lessons from application of the UNRES force field to predictions of structures of CASP10 targets

Adam K. Sieradzan, Tomasz K. Wirecki, S. Rackovsky, 2013, Proceedings of the National Academy of Sciences.

Alternative approach to protein structure prediction based on sequential similarity of physical properties

S. Rackovsky, H. Scheraga, Yi He, 2015, Proceedings of the National Academy of Sciences.

Prediction of protein conformation on the basis of a search for compact structures: Test on avian pancreatic polypeptide

S. Rackovsky, A. Liwo, M. Pincus, 1993, Protein science : a publication of the Protein Society.

Calculation of protein backbone geometry from α‐carbon coordinates based on peptide‐group dipole alignment

S. Rackovsky, A. Liwo, M. Pincus, 1993, Protein science : a publication of the Protein Society.

Conformational analysis of the 20-residue membrane-bound portion of melittin by conformational space annealing.

S. Rackovsky, H. Scheraga, J. Lee, 1998, Biopolymers.

Quantitative organization of the known protein x‐ray structures. I. Methods and short‐length‐scale results

S. Rackovsky, 1990, Proteins.

Nonlinearities in protein space limit the utility of informatics in protein biophysics

S. Rackovsky, 2015, Proteins.

On the Information Content of Protein Sequences

S Rackovsky, H A Scheraga, S. Rackovsky, 2011, Journal of biomolecular structure & dynamics.

Fold homology detection using sequence fragment composition profiles of proteins

S. Rackovsky, A. Solis, 2010, Proteins.

Sequence physical properties encode the global organization of protein structure space

S. Rackovsky, 2009, Proceedings of the National Academy of Sciences.

Protein sequence randomness and sequence/structure correlations.

S. Rackovsky, R. S. Rahman, Runa S. Rahman, 1995, Biophysical journal.

The dynamic basis of structural order in proteins

Chilaluck C. Konkankit, S. Rackovsky, 2022, Proteins.

On the existence and implications of an inverse folding code in proteins.

S Rackovsky, S. Rackovsky, 1995, Proceedings of the National Academy of Sciences of the United States of America.

Structure and Sequence Coding in Proteins: Methods and Applications.

S. Rackovsky, 1996 .

Information‐theoretic analysis of the reference state in contact potentials used for protein structure prediction

S. Rackovsky, A. Solis, 2010, Proteins.

Tunnelling in asymmetric double-minimum potentials

S. Rackovsky, 1976 .

Correlation of the structure of the transmembrane domain of the neu oncogene-encoded p185 protein with its function.

S. Rackovsky, M. Pincus, P. Brandt-Rauf, 1990, Proceedings of the National Academy of Sciences of the United States of America.

Homolog detection using global sequence properties suggests an alternate view of structural encoding in protein sequences

S. Rackovsky, H. Scheraga, 2014, Proceedings of the National Academy of Sciences.

Structure Class Encoding in Protein Dynamic Bioinformatics.

S. Rackovsky, 2022, The journal of physical chemistry. B.

Differential geometry and polymer conformation. 3. Single-site and nearest-neighbor distribution and nucleation of protein folding

S. Rackovsky, H. Scheraga, 1981 .

Electronic energy transfer in impure solids

S. Rackovsky, R. Silbey, 1973 .

Electronic energy transfer in impure solids: II. One impurity interacting with a full lattice

S. Rackovsky, 1973 .

On the Excited State Energy Surface of Rhodopsin and Bacteriorhodopsin

S. Rackovsky, A. Lewis, 1978 .

Effect of neighboring charges and external fields on photosynthetic electron transfer

S. Rackovsky, H. Scher, 1982 .

Influence of ordered backbone structure on protein folding. A study of some simple models.

S. Rackovsky, H. Scheraga, 1978, Macromolecules.

The Protein Universes

S. Rackovsky, S. Rackovsky, 2006 .

Classification of Protein Sequences and Structures

S. Rackovsky, S. Rackovsky, 2005 .

Sequence-, structure-, and dynamics-based comparisons of structurally homologous CheY-like proteins

S Rackovsky, Yanping Yin, Harold A Scheraga, 2017, Proceedings of the National Academy of Sciences.

Comparative computational analysis of prion proteins reveals two fragments with unusual structural properties and a pattern of increase in hydrophobicity associated with disease‐promoting mutations

Igor B Kuznetsov, Shalom Rackovsky, S. Rackovsky, 2004, Protein science : a publication of the Protein Society.

Conformations of the central transforming region (Ile 55-Met 67) of the p21 protein and their relationship to activation of the protein.

S. Rackovsky, M. Pincus, H. Scheraga, 2009, International journal of peptide and protein research.

The structure of the carboxyl terminus of the p21 protein. Structural relationship to the nucleotide-binding/transforming regions of the protein

S. Rackovsky, M. Pincus, P. Brandt-Rauf, 1990, Journal of protein chemistry.

Unfolding and refolding of the native structure of bovine pancreatic trypsin inhibitor studied by computer simulations.

S Rackovsky, H A Scheraga, M. Hao, 1993, Biochemistry.

Information and discrimination in pairwise contact potentials

Armando D Solis, S Rackovsky, S. Rackovsky, 2008, Proteins.

Improvement of statistical potentials and threading score functions using information maximization

Armando D Solis, S Rackovsky, S. Rackovsky, 2006, Proteins.

On the drift mobility of a molecular polaron in the presence of Coulomb traps

S. Rackovsky, H. Scher, 1999 .

Lattice Random Walk Theory of Geminate Recombination

S. Rackovsky, H. Scher, 1989 .

Electron trapping in double-stranded DNA: implications for formation of double-stranded breaks

S. Rackovsky, W. Bernhard, 1989 .

Theory of geminate recombination on a lattice. IV. Results using large Coulomb radii on the simple cubic and square lattices

S. Rackovsky, H. Scher, 1988 .

Effect of lattice topology on geminate recombination

S. Rackovsky, H. Scher, 1985 .

Theory of geminate recombination on a lattice

S. Rackovsky, H. Scher, 1984 .

Theory of geminate recombination as a molecular process

S. Rackovsky, H. Scher, 1984 .

On the properties and sequence context of structurally ambivalent fragments in proteins

S Rackovsky, Igor B Kuznetsov, S. Rackovsky, 2003, Protein science : a publication of the Protein Society.

Optimized representations and maximal information in proteins

S Rackovsky, A D Solis, S. Rackovsky, 2000, Proteins.

Computational analysis of variants of the operator binding domain of the bacteriophage ? repressor

S. Rackovsky, D. Kombo, D. Beveridge, 1999 .

Effects on protein structure and function of replacing tryptophan with 5-hydroxytryptophan: Single-tryptophan mutants of the N-terminal domain of the bacteriophage λ repressor

S. Rackovsky, H. Scheraga, K. Gibson, 1996, Journal of protein chemistry.

Discriminative ability with respect to amino acid types: Assessing the performance of knowledge‐based potentials without threading

S. Rackovsky, I. B. Kuznetsov, 2002, Proteins.

On the use of secondary structure in protein structure prediction: a bioinformatic analysis

S. Rackovsky, A. Solis, Armando D. Solis, 2004 .

Improvement of the treatment of loop structures in the UNRES force field by inclusion of coupling between backbone- and side-chain-local conformational states.

Adam Liwo, Harold A. Scheraga, Cezary Czaplewski, 2013, Journal of chemical theory and computation.

Prediction of conformation of rat galanin in the presence and absence of water with the use of monte Carlo methods and the ECEPP/3 force field

A. Liwo, S. Rackovsky, A. Liwo, 1994, Journal of protein chemistry.

Differential Geometry and Polymer Conformation. 2. Development of a Conformational Distance Function

S. Rackovsky, H. Scheraga, S. Rackovsky, 1980 .

Sequence determinants of protein architecture

S. Rackovsky, 2013, Proteins.

Spectral analysis of a protein conformational switch.

S. Rackovsky, 2011, Physical review letters.

Computational study of packing a collagen‐like molecule: Quasi‐hexagonal vs “Smith” collagen microfibril model

S. Rackovsky, H. Scheraga, Jooyoung Lee, 1996, Biopolymers.

The structure of protein dynamic space

S. Rackovsky, H. Scheraga, 2020, Proceedings of the National Academy of Sciences.

Differential geometry and protein folding

S. Rackovsky, H. Scheraga, S. Rackovsky, 1984 .

Global Survey of Protein Dynamic Properties.

Chilaluck C. Konkankit, S. Rackovsky, 2023, The journal of physical chemistry. B.

Global characteristics of protein sequences and their implications

S Rackovsky, S. Rackovsky, 2010, Proceedings of the National Academy of Sciences.

Alternative approach to protein structure prediction based on sequential similarity of physical properties

S. Rackovsky, H. Scheraga, Yi He, 2015, Proceedings of the National Academy of Sciences of the United States of America.

Beyond Supersecondary Structure: Physics-Based Sequence Alignment.

S Rackovsky, S. Rackovsky, 2019, Methods in molecular biology.

Linear response theory and the mechanical energy relaxations of solid high polymer systems

S. Rackovsky, A. Eisenberg, B. Eu, 1977 .

Class‐specific correlations between protein folding rate, structure‐derived, and sequence‐derived descriptors

Igor B Kuznetsov, Shalom Rackovsky, S. Rackovsky, 2003, Proteins.

Substitutions of proline 76 in yeast iso-1-cytochrome c. Analysis of residues compatible and incompatible with folding requirements.

S. Rackovsky, J. Stewart, F. Sherman, 1985, The Journal of biological chemistry.

"Hidden" sequence periodicities and protein architecture.

S Rackovsky, S. Rackovsky, 1998, Proceedings of the National Academy of Sciences of the United States of America.