T. Ideker
发表
R. König,
Yingyao Zhou,
D. Elleder,
2008,
Cell.
Trey Ideker,
Vesteinn Thorsson,
Leroy E. Hood,
2000,
J. Comput. Biol..
T. Ideker,
Han-Yu Chuang,
Eunjung Lee,
2007,
Molecular systems biology.
T. Jaakkola,
T. Ideker,
C. Yeang,
2005,
Genome Biology.
T. Ideker,
J. Cherry,
N. Krogan,
2012,
Nature Biotechnology.
V. Thorsson,
R. Karp,
T. Ideker,
1999,
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.
Trey Ideker,
Michael E. Smoot,
Keiichiro Ono,
2010,
Bioinform..
P. Shannon,
N. Baliga,
T. Ideker,
2003,
Genome research.
Michael L. Creech,
Gary D Bader,
Alexander R. Pico,
2007,
Nature Protocols.
T. Ideker,
R. Sharan,
2006,
Nature Biotechnology.
T. Ideker,
D. Botstein,
K. Dolinski,
2006,
Journal of biology.
Andrew M. Gross,
T. Ideker,
H. Carter,
2013,
Nature Methods.
T. Ideker,
R. Kelley,
Ryan M. Kelley,
2005,
Nature Biotechnology.
T. Ideker,
Han-Yu Chuang,
L. Rassenti,
2011,
Blood.
T. Ideker,
M. Smoot,
J. Ruscheinski,
2011,
Nature Protocols.
T. Ideker,
N. Krogan,
2012,
Molecular systems biology.
Sean R. Collins,
Sourav Bandyopadhyay,
T. Ideker,
2008,
Science.
Chih-yuan Chiang,
Sourav Bandyopadhyay,
T. Ideker,
2010,
Nature Methods.
Adam M. Feist,
T. Ideker,
B. Palsson,
2006
.
T. Ideker,
2004,
Nature Biotechnology.
T. Ideker,
R. Kelley,
A. Haugen,
2004,
Genome Biology.
Benjamin J. Raphael,
L. Cowen,
T. Ideker,
2017,
Nature Reviews Genetics.
Sourav Bandyopadhyay,
T. Ideker,
S. Friend,
2016,
Nature Communications.
T. Ideker,
S. Friend,
Jian-Bing Fan,
2013,
Molecular cell.
Roded Sharan,
Jianzhu Ma,
Trey Ideker,
2018,
Nature Methods.
T. Ideker,
R. Srivas,
Katherine Licon,
2013,
Cell reports.
T. Ideker,
R. Sharan,
N. Krogan,
2016,
Cell systems.
T. Ideker,
Anne-Ruxandra Carvunis,
2014,
Cell.
Sean R. Collins,
T. Ideker,
P. Cunningham,
2012,
Molecular cell.
Sean R. Collins,
Sourav Bandyopadhyay,
T. Ideker,
2008,
Molecular cell.
T. Ideker,
Erica Silva,
2019,
DNA repair.
Richard M. Karp,
Trey Ideker,
Nevan J. Krogan,
2009,
PLoS genetics.
T. Ideker,
Anne-Ruxandra Carvunis,
Koyel Mitra,
2013,
Nature Reviews Genetics.
Trey Ideker,
Timothy Ravasi,
Merril Gersten,
2009,
The Journal of Neuroscience.
T. Ideker,
J. Flint,
2019,
PLoS genetics.
T. Ideker,
A. Ashworth,
N. Krogan,
2015,
Molecular cell.
Daniel E. Carlin,
Samson H. Fong,
T. Ideker,
2019,
Cell systems.
Steven J. M. Jones,
Benjamin J. Raphael,
Evan O. Paull,
2014,
Cell.
Trey Ideker,
T. Ideker,
L. Samson,
2004,
Molecular cell.
T. Ideker,
J. Tagne,
H. Mak,
2006
.
Trey Ideker,
Andreas Beyer,
Sourav Bandyopadhyay,
2007,
Nature Reviews Genetics.
Sourav Bandyopadhyay,
T. Ideker,
R. Aebersold,
2010,
Science.
T. Ideker,
N. Krogan,
R. Srivas,
2013,
Molecular cell.
T. Ideker,
Anne-Ruxandra Carvunis,
J. Kreisberg,
2015,
eLife.
T. Ideker,
J. Al-Aama,
Matan Hofree,
2014,
Science.
Guillaume J. Filion,
T. Ideker,
B. van Steensel,
2010,
Genome research.
T. Ideker,
Katherine Licon,
Menzies Chen,
2013,
Cell reports.
T. Ideker,
T E Ideker,
2007,
Ernst Schering Research Foundation workshop.
Benjamin J. Polacco,
Robyn M. Kaake,
Gwendolyn M. Jang,
2020,
Nature.
Lei S. Qi,
T. Ideker,
N. Krogan,
2017,
Nature Methods.
S. Horvath,
R. Marioni,
A. Baccarelli,
2019,
Genome Biology.
T. Ideker,
L. Natarajan,
R. Naviaux,
2013,
Journal of the American Society of Nephrology : JASN.
T. Ideker,
D. Nickerson,
S. Taylor,
1999,
Genome research.
T. Ideker,
H. Carter,
W. Hildebrand,
2017,
Cell.
Justin K. Huang,
T. Ideker,
H. Carter,
2018,
Nature Genetics.
Neil A. Robertson,
Anagha J. Deshpande,
T. Ideker,
2019
.
John J. Cole,
Neil A. Robertson,
T. Ideker,
2017,
Genome Biology.
Justin K. Huang,
T. Ideker,
Jianzhu Ma,
2018,
Nature Communications.
Daniel E. Carlin,
J. Mesirov,
T. Ideker,
2018,
F1000Research.
Aaron N. Chang,
Lei S. Qi,
T. Ideker,
2017,
Nature Methods.
Trey Ideker,
Justin Huang,
Robert W Sobol,
2016,
Molecular cell.
Trey Ideker,
John Von Dollen,
Nevan J Krogan,
2018,
Cancer discovery.
T. Ideker,
S. Bahr,
Gordon J. Bean,
2014,
PloS one.
Trey Ideker,
Hannah Carter,
Christopher M. DeBoever,
2017,
Cancer discovery.
Trey Ideker,
Neil A. Robertson,
T. Ideker,
2018,
Molecular cell.
Trey Ideker,
Michael Considine,
Theresa Guo,
2016,
International journal of cancer.
Trey Ideker,
Janusz Dutkowski,
Celso A. Espinoza,
2010,
Nature Immunology.
Benno Schwikowski,
Nada Amin,
Trey Ideker,
2003
.
Trey Ideker,
Royston Goodacre,
Tao Huan,
2017,
Nature Methods.
Ryan K. Orosco,
Trey Ideker,
Hannah Carter,
2014,
Nature Genetics.
Amy L. Proskovec,
T. Ideker,
T. Wilson,
2020,
JAMA network open.
Peter D. Adams,
Trey Ideker,
Jianzhu Ma,
2019,
bioRxiv.
Peter D. Adams,
Trey Ideker,
Hannah Carter,
2017,
Genome Biology.
E. D. Kirby,
T. Ideker,
B. Miller,
2016,
Molecular Neurodegeneration.
T. Ideker,
R. Kelley,
Ryan M. Kelley,
2009,
PLoS genetics.
Benjamin J. Raphael,
Trey Ideker,
Jianzhu Ma,
2018,
Cell.
Trey Ideker,
Kang Zhang,
Daniel Chen,
2016,
Molecular cell.
Trey Ideker,
Janusz Dutkowski,
Leroy Hood,
2011,
Cell.
T. Ideker,
I. Bahar,
Christopher Churas,
2021,
Genome Biology.
T. Ideker,
A. McLysaght,
Anne-Ruxandra Carvunis,
2020,
Nature Communications.
T. Ideker,
A. McLysaght,
Anne-Ruxandra Carvunis,
2019,
bioRxiv.
Benjamin A. Barad,
T. Ideker,
N. Krogan,
2018,
bioRxiv.
Miguel Correa Marrero,
Robyn M. Kaake,
Gwendolyn M. Jang,
2020,
Science.
Daria A. Gaykalova,
T. Ideker,
P. Tamayo,
2019,
Nature Communications.
T. Ideker,
L. Wessels,
S. Canisius,
2019,
Cell.
T. Ideker,
E. Winzeler,
H. Carter,
2020
.
T. Ideker,
E. Winzeler,
H. Carter,
2020
.
T. Ideker,
I. Bahar,
Christopher Churas,
2020,
bioRxiv : the preprint server for biology.
T. Ideker,
I. Bahar,
Christopher Churas,
2020,
bioRxiv.
Alex I. Wiesman,
T. Ideker,
T. Wilson,
2019,
Cerebral cortex.
T. Ideker,
Brenton P. Munson,
E. Winzeler,
2020,
G3.
T. Ideker,
N. Krogan,
Jeffrey R. Johnson,
2020,
eLife.
T. Ideker,
A. Gingras,
E. Marcotte,
2022,
Nature Methods.
T. Ideker,
S. Chanda,
R. Dummer,
2015,
Oncogene.
T. Ideker,
Brenton P. Munson,
A. Majithia,
2019,
bioRxiv.
Roded Sharan,
Jian Peng,
Marc Hafner,
2021,
Nature Cancer.
T. Ideker,
C. Benner,
S. Duttke,
2018,
Molecular cell.
T. Ideker,
G. Mills,
F. Meric-Bernstam,
2020,
Nature Cancer.
Andrew M. Gross,
T. Ideker,
R. Tsien,
2015,
Oral oncology.
Ziv Bar-Joseph,
Trey Ideker,
Timothy Ravasi,
2010,
Genome Biology.
Samson H. Fong,
T. Ideker,
Jianzhu Ma,
2019
.
T. Ideker,
Zane Koch,
Adam Y. Li,
2022,
Journal of internal medicine.
T. Ideker,
K. Ono,
V. D’Agati,
2016,
JCI insight.
Samson H. Fong,
T. Ideker,
Jianzhu Ma,
2020,
Cell systems.
T. Ideker,
J. Rossier,
M. Boutros,
2013,
Proceedings of the National Academy of Sciences.
Trey Ideker,
Claudia Hernandez-Armenta,
Brian K. Shoichet,
2020,
bioRxiv.
T. Ideker,
A. Beyer,
S. Suthram,
2007,
2007 IEEE International Workshop on Genomic Signal Processing and Statistics.
Alexandra R. Buckley,
T. Ideker,
N. Schork,
2016,
BMC Genomics.
T. Ideker,
A. Gingras,
E. Marcotte,
2022,
Nature Biotechnology.
Gary D Bader,
Alexander R. Pico,
T. Ideker,
2012,
Nature Methods.
T. Ideker,
J. Shen,
P. Mali,
2017
.
T. Ideker,
Anne-Ruxandra Carvunis,
A. Vandemark,
2022,
bioRxiv.
Mikki D. Schantell,
Mikki D Schantell,
Rachel K. Spooner,
2022,
Aging.
T. Ideker,
N. Krogan,
Jisoo Park,
2021,
Science.
Doheon Lee,
Trey Ideker,
Eunjung Lee,
2008,
PLoS Comput. Biol..
Mikki D. Schantell,
Mikki D Schantell,
Brandon J. Lew,
2021,
Cerebral cortex.
Wei Zhang,
Trey Ideker,
Pablo Tamayo,
2018,
Cell systems.
Trey Ideker,
Yeyejide A. Adeleye,
Guy J Warner,
2006,
Genome Biology.
Trey Ideker,
Yang Xie,
Guanghua Xiao,
2013,
Science Signaling.
T. Ideker,
Philipp A. Jaeger,
C. McElfresh,
2015,
Applied and Environmental Microbiology.
Thomas J. Begley,
A. Baccarelli,
T. Ideker,
2014,
Environmental health perspectives.
T. Ideker,
L. Wessels,
S. Canisius,
2019,
Cell.
Jianzhu Ma,
Trey Ideker,
Wei Ouyang,
2020,
bioRxiv.
Trey Ideker,
Ted Liefeld,
Jill P Mesirov,
2014,
F1000Research.
Trey Ideker,
Ted Liefeld,
Jill P Mesirov,
2014,
F1000Research.
Genome wide proteomics of ERBB2 and EGFR and other oncogenic pathways in inflammatory breast cancer.
T. Ideker,
G. Omenn,
Matan Hofree,
2013,
Journal of proteome research.
Jacob D. Durrant,
Gregory M. Goldgof,
Andrea L. Cheung,
2021,
bioRxiv.
T. Ideker,
Han-Yu Chuang,
L. Rassenti,
2012
.
Trey Ideker,
Janusz Dutkowski,
T. Ideker,
2011,
PLoS Comput. Biol..
Justin K. Huang,
T. Ideker,
J. Shen,
2018,
Molecular Cancer Therapeutics.
Charles Auffray,
Trey Ideker,
Leroy Hood,
2011
.
T. Ideker,
A. Ashworth,
N. Krogan,
2021,
Science.
Gary D. Stormo,
Trey Ideker,
Christopher T. Workman,
2005,
Nucleic Acids Res..
T. Ideker,
A. McLysaght,
Anne-Ruxandra Carvunis,
2020,
Nature Communications.
T. Ideker,
Tibor van Welsem,
F. van Leeuwen,
2020,
Journal of Cell Science.
T. Ideker,
S. Sun,
F. Leeuwen,
2020
.
T. Ideker,
S. Rosenthal,
A. Willsey,
2021,
Cell systems.
Trey Ideker,
Hannah Carter,
T. Ideker,
2013,
Current opinion in genetics & development.
T. Ideker,
V. Nizet,
T. Hunter,
2015,
Molecular cell.
S. Horvath,
R. Marioni,
A. Baccarelli,
2019,
Genome Biology.
Trey Ideker,
Nicholas J. Schork,
Hannah Carter,
2019,
BMC Bioinformatics.
Alexandra R. Buckley,
T. Ideker,
N. Schork,
2018,
Genome Medicine.
J. Mesirov,
T. Ideker,
T. Rebbeck,
2016,
Proceedings of the National Academy of Sciences.
Trey Ideker,
Christopher Churas,
Santo Fortunato,
2020,
PLoS Comput. Biol..
Dajiang J. Liu,
Holly E. Poore,
James W. Madole,
2021,
Nature Neuroscience.
Jianzhu Ma,
Trey Ideker,
Brent M Kuenzi,
2020,
Cancer cell.
T. Ideker,
D. Rimm,
H. Kluger,
2012,
Cell.
Vineet Bafna,
Trey Ideker,
Michael Yu,
2014,
Bioinform..
Trey Ideker,
Nevan J. Krogan,
Sourav Bandyopadhyay,
2008,
PLoS Comput. Biol..
Christian M. Metallo,
T. Ideker,
A. Birmingham,
2018,
Molecular cell.
Elinore M Mercer,
T. Ideker,
Janusz Dutkowski,
2011,
Immunity.
T. Ideker,
Han-Yu Chuang,
Matan Hofree,
2010,
Annual review of cell and developmental biology.
Trey Ideker,
Sara Brin Rosenthal,
Kathleen M. Fisch,
2018,
Bioinform..
T. Ideker,
K. Ono,
Nozomu Yachie,
2022,
Nature Biotechnology.
Justin K. Huang,
T. Ideker,
Jianzhu Ma,
2018,
Nature Communications.
Trey Ideker,
Thomas J. Begley,
T. Ideker,
2002,
Molecular cancer research : MCR.
Joshua R. Smith,
Jacob D. Durrant,
Gregory M. Goldgof,
2022,
Communications biology.
T. Ideker,
2008,
Cell.
Trey Ideker,
Christopher T. Workman,
Ulrich Möller,
2006,
PLoS Comput. Biol..
Trey Ideker,
Andreas Beyer,
Han-Yu Chuang,
2008,
Nucleic acids research.
Trey Ideker,
Jason F Kreisberg,
Hidenori Tanaka,
2021,
PLoS Comput. Biol..
Trey Ideker,
Daniel E. Carlin,
Samson H. Fong,
2019,
iScience.
T. Ideker,
Janusz Dutkowski,
D. Durden,
2014,
PloS one.
Daria A. Gaykalova,
T. Ideker,
P. Tamayo,
2019,
Nature Communications.
Andrew M. Gross,
Justin K. Huang,
T. Ideker,
2015,
PloS one.
Christian M. Metallo,
T. Ideker,
A. Birmingham,
2018
.
Trey Ideker,
Han-Yu Chuang,
Hyosil Kim,
2013,
Genome research.
D. A. Stein,
T. Ideker,
S. Chanda,
2021,
Nature Microbiology.
T. Ideker,
Anne-Ruxandra Carvunis,
J. Kreisberg,
2015
.
T. Ideker,
K. Ono,
J. Gleeson,
2010,
Nature.
T. Ideker,
J. S. Gutkind,
Panomwat Amornphimoltham,
2017
.
T. Ideker,
Matan Hofree,
R. Beavis,
2015,
Journal of proteome research.
Colleen J. Doherty,
T. Ideker,
Philipp A. Jaeger,
2012,
Cell.
Trey Ideker,
Daniel E. Carlin,
Tongqiu Jia,
2018,
Bioinform..
T. Ideker,
S. Chanda,
C. Benner,
2020,
bioRxiv.
T. Ideker,
E. Winzeler,
H. Carter,
2022,
bioRxiv.
T. Ideker,
N. Krogan,
M. Bouhaddou,
2019,
Current opinion in genetics & development.
Trey Ideker,
T. Ideker,
Gordon J. Bean,
2012,
Genome Biology.
Justin K. Huang,
T. Ideker,
O. Harismendy,
2018,
JCO precision oncology.
Benjamin M. Gyori,
T. Ideker,
K. Ono,
2022,
bioRxiv.
T. Ideker,
B. Kuenzi,
2020,
Nature Reviews Cancer.
T. Ideker,
Leah V. Schaffer,
2021,
Cell systems.
T. Ideker,
N. Lewis,
S. Rosenthal,
2019,
Cell.
T. Ideker,
Jianzhu Ma,
Jian Peng,
2019,
bioRxiv.
Mary K. Lewinski,
T. Ideker,
S. Chanda,
2021,
Molecular Cell.
T. Ideker,
N. Krogan,
Jisoo Park,
2021,
Science.
Dexter Pratt,
Jing Chen,
Rudolf Pillich,
2017,
Cancer research.
Jing Chen,
Trey Ideker,
Aleksandar Stojmirovic,
2015,
Cell systems.
Trey Ideker,
Jason F. Kreisberg,
Andrew M. Gross,
2015,
PloS one.
Jian Peng,
T. Ideker,
Jianzhu Ma,
2018,
RECOMB.
Andrew M. Gross,
T. Ideker,
J. Shen,
2015,
OncoTarget.
Trey Ideker,
Jianzhu Ma,
Wei Zhang,
2018,
Bioinform..
Wei Zhang,
Trey Ideker,
Jianzhu Ma,
2018,
Bioinform..
T. Lenstra,
F. Holstege,
T. Ideker,
2018,
Nucleic acids research.
Andrew M. Gross,
T. Ideker,
H. Carter,
2017,
Genome Biology.
Trey Ideker,
Barry Demchak,
Dexter Pratt,
2017,
PLoS Comput. Biol..
T. Ideker,
S. Sun,
Tibor van Welsem,
2020,
Journal of cell science.
T. Ideker,
R. Srivas,
Monika Tsai-Pflugfelder,
2015,
Molecular cell.
Colin A. Johnson,
S. Gabriel,
T. Ideker,
2015,
eLife.
T. Ideker,
Jörg Menche,
C. Bock,
2017,
Nature Communications.
Trey Ideker,
Rama Balakrishnan,
J Michael Cherry,
2017,
Molecular cell.
John J. Cole,
T. Ideker,
J. Thomson,
2017,
Genome Biology.
T. Ideker,
Brenton P. Munson,
J. Shen,
2019,
Methods in molecular biology.
Trey Ideker,
John Paul Shen,
T. Ideker,
2018,
Journal of molecular biology.
T. Ideker,
R. Hampton,
Philipp A. Jaeger,
2018,
Molecular cell.
T. Ideker,
R. Hampton,
Philipp A. Jaeger,
2018
.
Jeremy Buhler,
Trey Ideker,
David Haynor,
2000
.
Jianzhu Ma,
Jing Chen,
Trey Ideker,
2019,
Cell systems.
Trey Ideker,
T. Ideker,
2004
.
Daniel E. Carlin,
T. Ideker,
Fugui Zhu,
2021,
bioRxiv.
T. Ideker,
K. Ono,
Nozomu Yachie,
2022,
Nature Biotechnology.
T. Ideker,
R. White,
Maayan Baron,
2021,
bioRxiv.
Trey Ideker,
Keiichiro Ono,
Michael Yu,
2013,
Nucleic Acids Res..
Mikki D. Schantell,
Rachel K. Spooner,
Brittany K. Taylor,
2021,
Aging.
T. Ideker,
D. Karow,
I. Derweesh,
2016,
Journal of endourology.
T. Ideker,
Chi-Hua Chen,
S. Rosenthal,
2023,
Nature Protocols.
Jiawei Han,
Trey Ideker,
Jianzhu Ma,
2017,
PSB.
T. Ideker,
R. Srivas,
A. Guénolé,
2013
.
Alexander V. Favorov,
Daria A. Gaykalova,
T. Ideker,
2020,
Oncogene.
Simon C Watkins,
T. Ideker,
R. Srivas,
2012,
Journal of proteome research.
T. Ideker,
D. Rimm,
H. Kluger,
2013
.
T. Ideker,
Jörg Menche,
C. Bock,
2017,
Nature Communications.
Dajiang J. Liu,
Holly E. Poore,
Scott F. Saccone,
2021,
Nature Neuroscience.
Roded Sharan,
Eytan Ruppin,
Trey Ideker,
2006,
BMC Bioinformatics.
T. Ideker,
G. Hannum,
I. Kozák,
2011,
The Journal of Biological Chemistry.
T. Ideker,
A. Siddiqui,
S. Subramani,
2015,
Autophagy.
T. Ideker,
N. Krogan,
R. Srivas,
2013
.
Benno Schwikowski,
Gary D Bader,
Trey Ideker,
2018,
F1000Research.
Trey Ideker,
Franco Maria Montevecchi,
Carlo Vittorio Cannistraci,
2010,
Bioinform..
Roded Sharan,
Eytan Ruppin,
Trey Ideker,
2005,
Systems Biology and Regulatory Genomics.
T. Ideker,
N. Krogan,
Jisoo Park,
2023,
Cell systems.
Roded Sharan,
Eytan Ruppin,
Trey Ideker,
2007,
ISMB/ECCB.
Trey Ideker,
Michael E. Smoot,
Keiichiro Ono,
2011,
Bioinform..
T. Ideker,
Jianzhu Ma,
Jian Peng,
2018,
bioRxiv.
Trey Ideker,
Ralf Herwig,
Keiichiro Ono,
2010,
Bioinform..
Andrew M. Gross,
T. Ideker,
R. Tsien,
2014,
Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery.
Andrew M. Gross,
T. Ideker,
R. Tsien,
2014
.
Trey Ideker,
Christopher T. Workman,
Yeyejide Adeleye,
2007
.
Benjamin J. Raphael,
Trey Ideker,
Christopher T. Workman,
2007
.
Alexandra R. Buckley,
T. Ideker,
N. Schork,
2019,
BMC Bioinformatics.
Trey Ideker,
Barry Demchak,
Keiichiro Ono,
2014,
F1000Research.
Samson H. Fong,
T. Ideker,
Brenton P. Munson,
2023,
Scientific reports.
Daria A. Gaykalova,
T. Ideker,
P. Tamayo,
2019,
Nature Communications.
Florian Auer,
Trey Ideker,
Frank Kramer,
2018,
Bioinform..
Edward L. Huttlin,
Gene W. Yeo,
Casper F. Winsnes,
2021,
Nature.
T. Ideker,
T. Robinson,
R. Cheng,
2023,
Cell reports.
T. Ideker,
H. Carter,
T. Haferlach,
2023,
bioRxiv.
Proceedings of the 2005 joint annual satellite conference on Systems biology and regulatory genomics
Benjamin J. Raphael,
Trey Ideker,
Christopher T. Workman,
2005
.
Daniel E. Carlin,
T. Ideker,
E. Silverman,
2023,
PloS one.
P. Shannon,
N. Baliga,
T. Ideker,
2003
.
T. Ideker,
R. Srivas,
2010
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James T. Robinson,
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