D. Burstein

发表

Accurate, multi-kb reads resolve complex populations and detect rare microorganisms

Brian C. Thomas, Dmitry Pushkarev, T. Blauwkamp, 2015, Genome research.

Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2 concentrations

Brian C. Thomas, Alexander J. Probst, Itai Sharon, 2017, Environmental microbiology.

Changes in exon-intron structure during vertebrate evolution affect the splicing pattern of exons.

D. Burstein, Osnat Penn, G. Ast, 2012, Genome research.

Differential GC content between exons and introns establishes distinct strategies of splice-site recognition.

Schraga Schwartz, Tal Pupko, Gil Ast, 2012, Cell reports.

Large-scale comparative analysis of splicing signals and their corresponding splicing factors in eukaryotes.

D. Burstein, E. Eyras, G. Ast, 2007, Genome research.

Retroelement guided protein diversification abounds in vast lineages of bacteria and archaea

Brian C. Thomas, Cindy J. Castelle, D. Burstein, 2017, Nature Microbiology.

Mediterranean grassland soil C–N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms

Brian C. Thomas, D. Burstein, J. Banfield, 2019, Nature Microbiology.

Genomic analysis of 38 Legionella species identifies large and diverse effector repertoires

Tal Pupko, Ofir Cohen, Jack A Gilbert, 2016, Nature Genetics.

Genome-Scale Identification of Legionella pneumophila Effectors Using a Machine Learning Approach

Tal Pupko, D. Burstein, T. Pupko, 2009, PLoS pathogens.

Novel Type III Effectors in Pseudomonas aeruginosa

D. Burstein, T. Pupko, E. Banin, 2015, mBio.

Identification of novel Xanthomonas euvesicatoria type III effector proteins by a machine-learning approach.

Tal Pupko, Dor Salomon, D. Burstein, 2016, Molecular plant pathology.

Computational modeling and experimental validation of the Legionella and Coxiella virulence-related type-IVB secretion signal

Tal Pupko, D. Burstein, T. Pupko, 2013, Proceedings of the National Academy of Sciences.

Genome-wide analysis of binge-eating disorder identifies the first three risk loci and implicates iron metabolism

D. Burstein, R. Sysko, P. Roussos, 2022, medRxiv.

the splicing pattern of exons intron structure during vertebrate evolution affect − Changes in exon Material

D. Burstein, Osnat Penn, G. Ast, 2011 .

The distinction of CPR bacteria from other bacteria based on protein family content

Cindy J. Castelle, D. Burstein, J. Banfield, 2019, Nature Communications.

Biological capacities clearly define a major subdivision in Domain Bacteria

Cindy J. Castelle, D. Burstein, J. Banfield, 2018, bioRxiv.

Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates.

Brian C. Thomas, D. Burstein, J. Banfield, 2017, Genome Research.

B cells engineered to express an anti-HIV antibody allow memory retention, class switch recombination and clonal selection in mice

D. Burstein, Y. Wine, I. Dotan, 2020, bioRxiv.

Tiny Hidden Genes within Our Microbiome

D. Burstein, Karin Mittelman, 2019, Cell.

Two distinct RNase activities of CRISPR-C2c2 enable guide-RNA processing and RNA detection

Jennifer A. Doudna, Robert Tjian, Jamie H. D. Cate, 2016, Nature.

Rapid and sensitive on‐site genetic diagnostics of pest fruit flies using CRISPR‐Cas12a

D. Burstein, G. Pines, D. Alon, 2022, bioRxiv.

Native homing endonucleases can target conserved genes in humans and in animal models

Tal Pupko, Martin Kupiec, Uri Gophna, 2011, Nucleic acids research.

Deciphering microbial gene function using natural language processing

D. Burstein, A. Stern, Danielle Miller, 2022, Nature Communications.

A Functional Mini-Integrase in a Two-Protein-type V-C CRISPR System.

Lucas B. Harrington, D. Burstein, J. Banfield, 2019, Molecular cell.

Detecting and Adjusting for Hidden Biases due to Phenotype Misclassification in Genome-Wide Association Studies

D. Burstein, A. Fanous, G. Hoffman, 2023, medRxiv.

Programmed DNA destruction by miniature CRISPR-Cas14 enzymes

Jennifer A. Doudna, Jillian F. Banfield, Lucas B. Harrington, 2018, Science.

New CRISPR-Cas systems from uncultivated microbes

Jennifer A. Doudna, David Burstein, Brian C. Thomas, 2016, Nature.

Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems

Christine L. Sun, Alexander J Probst, Alexander J. Probst, 2016, Nature Communications.

DNA motifs determining the efficiency of adaptation into the Escherichia coli CRISPR array

D. Burstein, T. Pupko, U. Qimron, 2013, Proceedings of the National Academy of Sciences.

Chimeric CRISPR-CasX enzymes and guide RNAs for improved genome editing activity.

D. Burstein, J. Doudna, Jun-Jie Liu, 2022, Molecular cell.

A scoutRNA Is Required for Some Type V CRISPR-Cas Systems.

Lucas B. Harrington, D. Burstein, J. Banfield, 2020, Molecular cell.

RNA Targeting by Functionally Orthogonal Type VI-A CRISPR-Cas Enzymes.

D. Burstein, J. Doudna, G. Knott, 2017, Molecular cell.

A diverse repertoire of anti-defense systems is encoded in the leading region of plasmids

D. Burstein, Bruria Samuel, 2023, bioRxiv.

Processing of grassland soil C-N compounds into soluble and volatile molecules is depth stratified and mediated by genomically novel bacteria and archaea

D. Burstein, J. Banfield, Karthik Anantharaman, 2018, bioRxiv.

Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria

Itai Sharon, Cindy J. Castelle, D. Burstein, 2019, Nature Communications.

Engineered B cells expressing an anti-HIV antibody enable memory retention, isotype switching and clonal expansion

D. Burstein, Y. Wine, Y. Carmi, 2020, Nature Communications.

CoPAP: Coevolution of Presence–Absence Patterns

Tal Pupko, David Burstein, Ofir Cohen, 2013, Nucleic Acids Res..

Uncovering the co-evolutionary network among prokaryotic genes

Tal Pupko, David Burstein, Ofir Cohen, 2012, Bioinform..

Novel Microbial Diversity and Functional Potential in the Marine Mammal Oral Microbiome

Christine L. Sun, D. Burstein, J. Banfield, 2017, Current Biology.

Potential for microbial H2 and metal transformations associated with novel bacteria and archaea in deep terrestrial subsurface sediments

Yuki Amano, Alexander J. Probst, Karthik Anantharaman, 2017, The ISME Journal.

The Average Common Substring Approach to Phylogenomic Reconstruction

David Burstein, Tamir Tuller, Benny Chor, 2006, J. Comput. Biol..

Analysis of five complete genome sequences for members of the class Peribacteria in the recently recognized Peregrinibacteria bacterial phylum

Alexander J. Probst, Cindy J. Castelle, D. Burstein, 2016, PeerJ.

A Machine Learning Approach To Identify Hydrogenosomal Proteins in Trichomonas vaginalis

D. Burstein, T. Pupko, W. Martin, 2011, Eukaryotic Cell.

A Machine Learning Approach To Identify Hydrogenosomal Proteins in Trichomonas vaginalis

D. Burstein, T. Pupko, W. Martin, 2011, Eukaryotic Cell.

Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria

Itai Sharon, D. Burstein, J. Banfield, 2018, bioRxiv.

Identification of Novel Coxiella burnetii Icm/Dot Effectors and Genetic Analysis of Their Involvement in Modulating a Mitogen-Activated Protein Kinase Pathway

D. Burstein, T. Pupko, Ziv Lifshitz, 2014, Infection and Immunity.

Using big sequencing data to identify chronic SARS-Coronavirus-2 infections

D. Burstein, A. Stern, S. Fleishon, 2023, bioRxiv.

MRSA Causing Infections in Hospitals in Greater Metropolitan New York: Major Shift in the Dominant Clonal Type between 1996 and 2014

D. Burstein, A. Tomasz, Guiqing Wang, 2016, PloS one.

Analysis of five complete genome sequences for members of the class Peribacteria in the recently recognized Peregrinibacteria bacterial phylum

Alexander J. Probst, D. Burstein, K. Williams, 2016, PeerJ.

CRISPR-based genetic diagnostics in microgravity.

D. Burstein, L. Stodieck, D. Alon, 2023, Biosensors & bioelectronics.

Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates.

D. Burstein, J. Banfield, C. Brown, 2017, Genome research.

Phenotypic and genotypic analysis of antimicrobial resistance in Nocardia species.

D. Burstein, H. Ben‐Zvi, A. Adler, 2023, The Journal of antimicrobial chemotherapy.

Two distinct RNase activities of CRISPR-C2c2 enable guide-RNA processing and RNA detection

D. Burstein, R. Tjian, J. Doudna, 2016, Nature.

Information Theoretic Approaches to Whole Genome Phylogenies

David Burstein, Tamir Tuller, Benny Chor, 2005, RECOMB.