D. Komura

发表

Global variation in copy number in the human genome

D. Conrad, R. Redon, L. Feuk, 2006, Nature.

Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays.

Charles Lee, S. Scherer, M. Hurles, 2006, Genome research.

Capturing the differences between humoral immunity in the normal and tumor environments from repertoire-seq of B-cell receptors using supervised machine learning

S. Ishikawa, D. Komura, S. Imoto, 2017, BMC Bioinformatics.

Pan-cancer analysis of whole genomes

Steven J. M. Jones, Nuno A. Fonseca, Icgc, 2020, Nature.

A wave of nascent transcription on activated human genes

D. Komura, H. Aburatani, K. Shirahige, 2009, Proceedings of the National Academy of Sciences.

Deep learning-based classification of the mouse estrous cycle stages

D. Komura, C. Sutoh, S. Matsuda, 2020, Scientific Reports.

CASTIN: a system for comprehensive analysis of cancer-stromal interactome

S. Ishikawa, D. Komura, H. Aburatani, 2016, BMC Genomics.

Supplemental Information Immunogenetic Pro fi ling for Gastric Cancers Identi fi es Sulfated Glycosaminoglycans as Major and Functional B Cell Antigens in Human Malignancies

S. Ishikawa, D. Komura, H. Aburatani, 2017 .

Brainstem intraparenchymal schwannoma with genetic analysis: a case report and literature review

S. Ishikawa, D. Komura, H. Katoh, 2021, BMC medical genomics.

Single-Cell Transcriptome Analyses Reveal the Cell Diversity and Developmental Features of Human Gastric and Metaplastic Mucosa

S. Ishikawa, D. Komura, H. Katoh, 2022, bioRxiv.

Capturing the differences between humoral immunity in the normal and tumor environments from repertoire-seq of B-cell receptors using supervised machine learning

S. Ishikawa, D. Komura, S. Imoto, 2019, BMC Bioinform..

Clinical significance of NF2 alteration in grade I meningiomas revisited; prognostic impact integrated with extent of resection, tumour location, and Ki-67 index

S. Ishikawa, D. Komura, H. Katoh, 2022, Acta Neuropathologica Communications.

The niche component periostin is produced by cancer-associated fibroblasts, supporting growth of gastric cancer through ERK activation.

D. Komura, K. Miyazono, M. Fukayama, 2014, The American journal of pathology.

Stable knockdown of S100A4 suppresses cell migration and metastasis of osteosarcoma

D. Komura, H. Aburatani, M. Fukayama, 2011, Tumor Biology.

Single-Cell Transcriptome Analyses Reveal the Cell Diversity and Developmental Features of 1 Human Gastric and Metaplastic Mucosa 2 3

S. Ishikawa, D. Komura, H. Katoh, 2022 .

Functional genomics screening identifies aspartyl‐tRNA synthetase as a novel prognostic marker and a therapeutic target for gastric cancers

S. Ishikawa, D. Komura, H. Katoh, 2022, The Journal of pathology.

Beyond pathologist-level annotation of large-scale cancer histology for semantic segmentation using immunofluorescence restaining

S. Ishikawa, D. Komura, H. Katoh, 2022, bioRxiv.

Immune repertoire profiling for disease pathobiology

S. Ishikawa, D. Komura, H. Katoh, 2022, Pathology international.

High-density oligonucleotide array with sub-kilobase resolution reveals breakpoint information of submicroscopic deletions in nevoid basal cell carcinoma syndrome

S. Ishikawa, M. Shapero, D. Komura, 2007, Human Genetics.

Nucleic acid–triggered tumoral immunity propagates pH‐selective therapeutic antibodies through tumor‐driven epitope spreading

S. Ishikawa, D. Komura, K. Tsumoto, 2022, Cancer science.

Multi-tumor analysis of cancer-stroma interactomes of patient-derived xenografts unveils the unique homeostatic process in renal cell carcinomas

S. Ishikawa, D. Komura, H. Aburatani, 2021, iScience.

Machine Learning Methods for Histopathological Image Analysis

Daisuke Komura, Shumpei Ishikawa, S. Ishikawa, 2017, Computational and structural biotechnology journal.

Genomic landscape of a mouse model of diffuse-type gastric adenocarcinoma

S. Ishikawa, D. Komura, J. Inazawa, 2021, Gastric Cancer.

Defined lifestyle and germline factors predispose Asian populations to gastric cancer

S. Ishikawa, D. Komura, H. Aburatani, 2020, Science Advances.

Patterns of somatic structural variation in human cancer genomes

Nuno A. Fonseca, Gary D Bader, Benjamin J. Raphael, 2020, Nature.

Viola: a structural variant signature extractor with user-defined classifications

Daisuke Komura, Shumpei Ishikawa, Itsuki Sugita, 2021, bioRxiv.

Focal adhesion ribonucleoprotein complex proteins are major humoral cancer antigens and targets in autoimmune diseases

S. Ishikawa, D. Komura, Hiroki Konishi, 2020, Communications Biology.

Immunogenetic Profiling for Gastric Cancers Identifies Sulfated Glycosaminoglycans as Major and Functional B Cell Antigens in Human Malignancies.

S. Ishikawa, D. Komura, H. Aburatani, 2017, Cell reports.

HER2 Heterogeneity Is Associated with Poor Survival in HER2-Positive Breast Cancer

S. Ishikawa, D. Komura, H. Okano, 2018, International journal of molecular sciences.

Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

Nuno A. Fonseca, Gary D Bader, Benjamin J. Raphael, 2020, Nature Communications.

Universal encoding of pan-cancer histology by deep texture representations.

S. Ishikawa, D. Komura, Hiroki Konishi, 2022, Cell reports.

Deep Texture Representations as a Universal Encoder for Pan-cancer Histology

Ryohei Suzuki, Keisuke Fukuta, Akihiro Kawabe, 2020, bioRxiv.

From Detection of Individual Metastases to Classification of Lymph Node Status at the Patient Level: The CAMELYON17 Challenge

Shaoqun Zeng, Jörg Franke, Fabian Both, 2019, IEEE Transactions on Medical Imaging.

Clinicopathological significance of microRNA‐21 in extracellular vesicles of pleural lavage fluid of lung adenocarcinoma and its functions inducing the mesothelial to mesenchymal transition

D. Komura, H. Uozaki, Y. Kikuchi, 2020, Cancer medicine.

Loss of YAP1 defines neuroendocrine differentiation of lung tumors

S. Ishikawa, D. Komura, H. Aburatani, 2016, Cancer science.

Difference in morphology and interactome profiles between orthotopic and subcutaneous gastric cancer xenograft models

S. Ishikawa, D. Komura, T. Nishizawa, 2018, Journal of toxicologic pathology.

High expression levels of polymeric immunoglobulin receptor are correlated with chemoresistance and poor prognosis in pancreatic cancer

S. Ishikawa, D. Komura, Takeshi Aoki, 2020, Oncology reports.

High levels of human epididymis protein 4 mRNA and protein expression are associated with chemoresistance and a poor prognosis in pancreatic cancer

S. Ishikawa, D. Komura, Takeshi Aoki, 2020, International journal of oncology.

High expression of olfactomedin-4 is correlated with chemoresistance and poor prognosis in pancreatic cancer

S. Ishikawa, D. Komura, M. Izumizaki, 2020, PloS one.

In vivo effects of mutant RHOA on tumor formation in an orthotopic inoculation model

S. Ishikawa, D. Komura, H. Aburatani, 2019, Oncology reports.

Focal adhesion ribonucleoprotein complex proteins are major humoral cancer antigens and targets in autoimmune diseases

S. Ishikawa, D. Komura, Hiroki Konishi, 2020, Communications Biology.

Helicobacter pylori CagA elicits BRCAness to induce genome instability that may underlie bacterial gastric carcinogenesis.

S. Ishikawa, D. Komura, M. Fukayama, 2021, Cell host & microbe.

Somatic GJA4 gain-of-function mutation in orbital cavernous venous malformations

S. Ishikawa, D. Komura, T. Matsukawa, 2022, Angiogenesis.

Interleukin-13 receptor α2 is a novel marker and potential therapeutic target for human melanoma

S. Ishikawa, D. Komura, M. Fukayama, 2019, Scientific Reports.

The first case of gastric carcinoma with NTRK rearrangement: identification of a novel ATP1B–NTRK1 fusion

S. Ishikawa, D. Komura, H. Aburatani, 2020, Gastric Cancer.

Advanced deep learning applications in diagnostic pathology

Daisuke KOMURA, Shumpei ISHIKAWA, S. Ishikawa, 2021, Translational and Regulatory Sciences.

Comprehensive molecular characterization of mitochondrial genomes in human cancers

Nuno A. Fonseca, Gary D Bader, Benjamin J. Raphael, 2017, bioRxiv.

Author Correction: Pan-cancer analysis of whole genomes

Nuno A. Fonseca, Gary D Bader, Benjamin J. Raphael, 2023, Nature.

Sex differences in oncogenic mutational processes

Nuno A. Fonseca, Gary D Bader, Benjamin J. Raphael, 2019, Nature Communications.

Restaining-based annotation for cancer histology segmentation to overcome annotation-related limitations among pathologists

S. Ishikawa, D. Komura, H. Katoh, 2023, Patterns.

Novel targets identified by integrated cancer-stromal interactome analysis of pancreatic adenocarcinoma.

S. Ishikawa, D. Komura, Y. Miyagi, 2020, Cancer letters.

Machine learning approaches for pathologic diagnosis

Daisuke Komura, Shumpei Ishikawa, S. Ishikawa, 2019, Virchows Archiv.

Luigi: Large-scale histopathological image retrieval system using deep texture representations

Daisuke Komura, Hiroki Konishi, Ryohei Suzuki, 2018, bioRxiv.

RNF213 p.Arg4810Lys Wild Type is Associated with De Novo Hemorrhage in Asymptomatic Hemispheres with Moyamoya Disease

S. Ishikawa, D. Komura, H. Katoh, 2023, Translational stroke research.

Clinical significance of NF2 alteration in grade I meningiomas revisited; prognostic impact integrated with extent of resection, tumour location, and Ki-67 index

S. Ishikawa, D. Komura, H. Katoh, 2022, Acta neuropathologica communications.

Allelic dosage analysis with genotyping microarrays.

Hiroyuki Aburatani, Daisuke Komura, Kunihiro Nishimura, 2005, Biochemical and biophysical research communications.

Multidimensional support vector machines for visualization of gene expression data

Hiroshi Nakamura, Sigeo Ihara, Shuichi Tsutsumi, 2004, SAC '04.

Multiancestry genomic and transcriptomic analysis of gastric cancer

S. Ishikawa, D. Komura, H. Aburatani, 2023, Nature Genetics.

A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns

Nuno A. Fonseca, Benjamin J. Raphael, Allison P. Heath, 2020, Nature Communications.

Stomach encyclopedia: Combined single-cell and spatial transcriptomics reveal cell diversity and homeostatic regulation of human stomach.

S. Ishikawa, D. Komura, H. Katoh, 2023, Cell reports.

Head and Neck Tumor Histopathological Image Representation with Pr with Pre- Trained Conv ained Convolutional Neur olutional Neural Network and Vision al Network and Vision Transformer

S. Ishikawa, D. Komura, Tohru Ikeda, 2023, Journal of Dentistry Indonesia.

Noise Reduction from Genotyping Microarrays Using Probe Level Information

Jing Huang, Michitaka Hirose, Hiroshi Nakamura, 2006, Silico Biol..