R. Drmanac

发表

Accurate whole genome sequencing and haplotyping from10-20 human cells

Jessica C. Ebert, Madeleine P. Ball, B. Peters, 2012, Nature.

DNA sequencing by hybridization: 100 bases read by a non-gel-based method.

R. Drmanac, Z. Strezoska, T. Paunesku, 1991, Proceedings of the National Academy of Sciences of the United States of America.

Sequencing of megabase plus DNA by hybridization: theory of the method.

R. Drmanac, I. Brukner, I. Labat, 1989, Genomics.

This PDF file includes: Materials and Methods

Robert B. Hartlage, W. C. Banyai, Jessica C. Ebert, 2009 .

Analysis of Genetic Inheritance in a Family Quartet by Whole-Genome Sequencing

P. Shannon, L. Hood, J. Roach, 2010, Science.

A public resource facilitating clinical use of genomes

Euan A Ashley, Jong Bhak, Leonid Peshkin, 2012, Proceedings of the National Academy of Sciences.

Processing of cDNA and genomic kilobase-size clones for massive screening, mapping and sequencing by hybridization.

R. Drmanac, S. Drmanac, 1994, BioTechniques.

Gene-representing cDNA clusters defined by hybridization of 57,419 clones from infant brain libraries with short oligonucleotide probes.

R. Drmanac, M. Soares, I. Labat, 1996, Genomics.

Sequencing by hybridization: Towards an automated sequencing of one million M13 clones arrayed on membranes

R. Drmanac, I. Labat, R. Crkvenjakov, 1992, Electrophoresis.

The whole genome sequences and experimentally phased haplotypes of over 100 personal genomes

Alexander Wait Zaranek, Tom Clegg, George M. Church, 2016, GigaScience.

The mutation spectrum revealed by paired genome sequences from a lung cancer patient

A. Sparks, M. Kennemer, K. Pant, 2010, Nature.

Genome dynamics of the human embryonic kidney 293 lineage in response to cell biology manipulations

Yao-Cheng Lin, Jan Tavernier, Radoje Drmanac, 2014, Nature Communications.

Accurate sequencing by hybridization for DNA diagnostics and individual genomics

R. Drmanac, I. Labat, B. Hauser, 1998, Nature Biotechnology.

The advent of personal genome sequencing

R. Drmanac, 2011, Genetics in Medicine.

cPAS-based sequencing on the BGISEQ-500 to explore small non-coding RNAs

A. Alexeev, R. Drmanac, Yuxiang Li, 2016, Clinical Epigenetics.

Personalized pharmacogenomics profiling using whole-genome sequencing.

B. Peters, R. Drmanac, G. Patrinos, 2014, Pharmacogenomics.

Co-barcoded sequence reads from long DNA fragments: a cost-effective solution for “perfect genome” sequencing

Radoje Drmanac, Brock A. Peters, B. Peters, 2015, Front. Genet..

The Ultimate Genetic Test

Radoje Drmanac, R. Drmanac, 2012, Science.

Sequencing by hybridization (SBH): advantages, achievements, and opportunities.

Radoje Drmanac, Snezana Drmanac, Chongjun Xu, 2002, Advances in biochemical engineering/biotechnology.

DNA sequence determination by hybridization: a strategy for efficient large-scale sequencing.

L. Hood, R. Drmanac, Z. Strezoska, 1993, Science.

Significant abundance of cis configurations of coding variants in diploid human genomes

B. Peters, G. Church, R. Drmanac, 2019, Nucleic acids research.

Significant abundance of cis configurations of mutations in diploid human genomes

Ralf Herwig, George M. Church, Radoje Drmanac, 2017, bioRxiv.

Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping, and de novo assembly

Jian Wang, Xun Xu, Fei Fan, 2019, Genome research.

Ou Wang A novel co-barcoding method for whole genome sequencing , haplotyping and scaffolding

Fan, Yang, Han K. Lam, 2018 .

De novo assembly of a haplotype-resolved human genome

Jian Wang, Xun Xu, Lars Bolund, 2015, Nature Biotechnology.

SBH and the integration of complementary approaches in the mapping, sequencing, and understanding of complex genomes

R. Drmanac, I. Labat, S. Drmanac, 1993 .

Requirements in Screening cDNA Libraries for New Genes and Solutions Offered by SBH Technology

R. Drmanac, I. Labat, S. Drmanac, 1994 .

An algorithm for the DNA sequence generation from k-tuple word contents of the minimal number of random fragments.

R. Drmanac, I. Labat, R. Crkvenjakov, 1991, Journal of biomolecular structure & dynamics.

Advanced Whole-Genome Sequencing and Analysis of Fetal Genomes from Amniotic Fluid.

Rebecca Yu Zhang, B. Peters, R. Drmanac, 2018, Clinical chemistry.

Advanced whole genome sequencing and analysis of fetal genomes from amniotic fluid

Rebecca Yu Zhang, B. Peters, R. Drmanac, 2017, bioRxiv.

Detection and phasing of single base de novo mutations in biopsies from human in vitro fertilized embryos by advanced whole-genome sequencing

Rebecca Yu Zhang, B. Peters, B. Kermani, 2015, Genome research.

A simple bead-based method for generating cost-effective co-barcoded sequence reads

Xun Xu, Fei Fan, Dan Chen, 2018, Protocol Exchange.

Single-cell RNA profiling links ncRNAs to spatiotemporal gene expression during C. elegans embryogenesis

R. Drmanac, Shiping Liu, Y. Lei, 2020, Scientific Reports.

Identification of cancer predisposition variants in apparently healthy individuals using a next-generation sequencing-based family genomics approach

B. Peters, R. Drmanac, P. Stenson, 2015, Human Genomics.

Regulation of specific cell clusters in TCR-T cells responding to differential expression of tumor PD-L1

R. Drmanac, B. Kang, Qianqian Gao, 2020, bioRxiv.

Variant chromosomal arrangement of adult β-globin genes in rat

R. Drmanac, T. Paunesku, D. Radosavljević, 1989 .

CoolMPS: evaluation of antibody labeling based massively parallel non-coding RNA sequencing

R. Drmanac, M. Callow, Hui Jiang, 2020, Nucleic acids research.

Sequencing and Fingerprinting DNA by Hybridization with Oligonucleotide Probes

R. Drmanac, S. Drmanac, D. Little, 2006 .

Sequencing by hybridization arrays.

R. Drmanac, S. Drmanac, 2001, Methods in molecular biology.

CHAPTER FOUR – Sequencing by Hybridization

R. Drmanac, I. Labat, S. Drmanac, 1994 .

Reliable hybridization of oligonucleotides as short as six nucleotides.

R. Drmanac, Z. Strezoska, I. Labat, 1990, DNA and cell biology.

A calculation of fragment lengths obtainable from human DNA with 78 restriction enzymes: an aid for cloning and mapping.

R. Drmanac, R. Crkvenjakov, V. Glišin, 1986, Nucleic acids research.

Cloning of a novel epidermal growth factor repeat containing gene EGFL6: expressed in tumor and fetal tissues.

J. E. Ford, George Yeung, R. Drmanac, 1999, Genomics.

IL1HY1: A novel interleukin-1 receptor antagonist gene.

J. E. Ford, R. Drmanac, A. Pace, 1999, Biochemical and biophysical research communications.

Untreated PKU patients without intellectual disability: SHANK gene family as a candidate modifier

R. Drmanac, M. Stojiljkovic, K. Klaassen, 2021, Molecular genetics and metabolism reports.

Origin of Rat fLGlobin Haplotypes Containing Three and Five Genes ’

R. Drmanac, T. Paunesku, R. Crkvenjakov, 1998 .

Origin of rat beta-globin haplotypes containing three and five genes.

R. Drmanac, T. Paunesku, D. Radosavljević, 1990, Molecular biology and evolution.

Combinatorial sequencing-by-hybridization: analysis of the NF1 gene.

R. Drmanac, P. Fortina, S. Surrey, 2006, Genetic testing.

Novel genetic risk variants for pediatric celiac disease

B. Peters, R. Drmanac, G. Patrinos, 2016, Human Genomics.

Identification of cancer predisposition variants in apparently healthy individuals using a next-generation sequencing-based family genomics approach

Andrew P. Stubbs, B. Peters, R. Drmanac, 2015, Human Genomics.

Advanced Personal Genome Sequencing as the Ultimate Diagnostic Test

B. Peters, R. Drmanac, S. Drmanac, 2017 .

Truncating mutations of MAGEL2cause Prader-Willi phenotypes and autism

B. Peters, R. Drmanac, A. Beaudet, 2013, Nature Genetics.

Clinical and genetic analysis of a rare syndrome associated with neoteny

R. F. Walker, Rebecca Yu Zhang, P. Carnevali, 2017, Genetics in Medicine.

Evaluating the genomic and sequence integrity of human ES cell lines; comparison to normal genomes.

Myung Jin Park, R. Drmanac, I. Labat, 2012, Stem cell research.

Long Fragment Read (LFR) Technology: Cost-Effective, High-Quality Genome-Wide Molecular Haplotyping.

Radoje Drmanac, Brock A Peters, Rebecca Yu Zhang, 2017, Methods in molecular biology.

Quantitative Whole Genome Sequencing of Circulating Tumor Cells Enables Personalized Combination Therapy of Metastatic Cancer.

Natali Gulbahce, Radoje Drmanac, Rick Tearle, 2017, Cancer research.

Assessment of the cPAS-based BGISEQ-500 platform for metagenomic sequencing

Jian Wang, Xun Xu, Mo Han, 2017, GigaScience.

Multiplexed SNP genotyping using nanobarcode particle technology

Radoje Drmanac, Snezana Drmanac, Chongjun Xu, 2006, Analytical and bioanalytical chemistry.

Identification of APC gene mutations in colorectal cancer using universal microarray‐based combinatorial sequencing‐by‐hybridization

R. Drmanac, P. Fortina, S. Surrey, 2004, Human mutation.

Development of coupling controlled polymerizations by adapter-ligation in mate-pair sequencing for detection of various genomic variants in one single assay

B. Kermani, Oleg Alferov, A. Alexeev, 2019, DNA research : an international journal for rapid publication of reports on genes and genomes.

Mate-pair Library Construction with Controlled Polymerization Enables Comprehensive Structural Rearrangement Detection

Xun Xu, Kong Xiangdong, Dai Peng, 2018, bioRxiv.

CoolMPS for robust sequencing of single-nuclear RNAs captured by droplet-based method

R. Drmanac, T. Wyss-Coray, Hui Zhang, 2020, Nucleic acids research.

Isolation and whole genome sequencing of fetal cells from maternal blood towards the ultimate non‐invasive prenatal testing

Lars Bolund, Wei Wang, Hui Jiang, 2017, Prenatal diagnosis.

Impact of sequencing depth and technology on de novo RNA-Seq assembly

R. Drmanac, G. Wong, Xinming Liang, 2019, BMC genomics.

Premalignant SOX2 overexpression in the fallopian tubes of ovarian cancer patients: Discovery and validation studies

Rebecca Yu Zhang, C. Yau, G. McVean, 2016, EBioMedicine.

3′ Branch ligation: a novel method to ligate non-complementary DNA to recessed or internal 3′OH ends in DNA or RNA

B. Peters, A. Alexeev, Yuan Jiang, 2018, bioRxiv.

Efficient long single molecule sequencing for cost effective and accurate sequencing, haplotyping, and de novo assembly

Han K. Lam, Rebecca Yu Zhang, B. Peters, 2018, bioRxiv.

3’ Branch Ligation: A Novel Method to Ligate Non-Complementary DNA to Recessed or Internal 3’OH Ends in DNA or RNA

Ou Wang, Ao Chen, Wenwei Zhang, 2018, bioRxiv.

Single tube bead-based DNA co-barcoding for cost effective and accurate sequencing, haplotyping, and assembly

Xun Xu, Fei Fan, Yuliang Dong, 2018 .

High-resolution single-molecule long-fragment rRNA gene amplicon sequencing for uncultured bacterial and fungal communities

B. Peters, R. Drmanac, K. Kristiansen, 2021, bioRxiv.

Comparison of long-read methods for sequencing and assembly of a plant genome

Wei Tian, Ou Wang, Radoje Drmanac, 2020, bioRxiv.

Advanced Whole Genome Sequencing Using an Entirely PCR-free Massively Parallel Sequencing Workflow

Zhe Lin, Jing Zhao, Yinlong Xie, 2019, bioRxiv.

Genomic variants in the FTO gene are associated with sporadic amyotrophic lateral sclerosis in Greek patients

B. Peters, R. Drmanac, D. Cooper, 2017, Human Genomics.

CoolMPS™: Advanced massively parallel sequencing using antibodies specific to each natural nucleobase

Linsu Chen, R. Drmanac, Jian Wang, 2020, bioRxiv.

Computational Techniques for Human Genome Resequencing Using Mated Gapped Reads

Jessica C. Ebert, PAOLO CARNEVALI, JONATHAN BACCASH, 2012, J. Comput. Biol..

cPAS-based sequencing on the BGISEQ-500 to explore small non-coding RNAs

A. Alexeev, R. Drmanac, Yuxiang Li, 2016, Clinical Epigenetics.

DNA sequencing by hybridization with arrays of samples or probes.

R. Drmanac, D. Gietzen, S. Drmanac, 2001, Methods in molecular biology.

Reusable and Sensitive Detection Method for Exonuclease III Activity by DNB Nanoarrays Based on cPAS Sequencing Technology

R. Drmanac, Huanming Yang, Wenwei Zhang, 2020, bioRxiv.

Selective DNA amplification from complex genomes using universal double-sided adapters.

R. Drmanac, M. Callow, S. Drmanac, 2004, Nucleic acids research.

An improved bacterial colony lysis procedure enables direct DNA hybridisation using short (10, 11 bases) oligonucleotides to cosmids

Hans Lehrach, D. Nizetic, R. Drmanac, 1991, Nucleic Acids Res..

Elevated Baseline Triglyceride Levels Modulate Effects of HMGCoA Reductase Inhibitors on Plasma Lipoproteins

R. Drmanac, D. Gietzen, M. Malloy, 2001, Journal of cardiovascular pharmacology and therapeutics.

Whole genome sequence analysis of BT-474 using complete Genomics’ standard and long fragment read technologies

Rebecca Yu Zhang, B. Peters, R. Drmanac, 2016, GigaScience.

cDNA screening by array hybridization.

R. Drmanac, S. Drmanac, R Drmanac, 1999, Methods in enzymology.

Reliable multiplex sequencing with rare index mis-assignment on DNB-based NGS platform

Yuan Jiang, J. Liu, R. Drmanac, 2018, bioRxiv.

Reliable multiplex sequencing with rare index mis-assignment on DNB-based NGS platform

Jian Wang, Xun Xu, Hui Jiang, 2018, BMC Genomics.

Genomic variants in the FTO gene are associated with sporadic amyotrophic lateral sclerosis in Greek patients

B. Peters, R. Drmanac, D. Cooper, 2017, Human Genomics.

Novel genetic risk variants for pediatric celiac disease

B. Peters, R. Drmanac, G. Chrousos, 2016, Human Genomics.

High-resolution single-molecule long-fragment rRNA gene amplicon sequencing of bacterial and eukaryotic microbial communities.

B. Peters, R. Drmanac, Wenwei Zhang, 2023, Cell reports methods.

Supporting Online Material Materials and Methods Som Text Figs. S1 to S9 Tables S1 to S17 References Dataset S1 Analysis of Genetic Inheritance in a Family Quartet by Whole-genome Sequencing

P. Shannon, L. Hood, J. Roach, 2022 .

Analysis of Genetic Inheritance in a Family Quartet by Whole-Genome Sequencing

P. Shannon, J. Roach, J. Shendure, 2010, Science.

A public resource facilitating clinical use of genomes

Shawn M. Douglas, Jason R. Bobe, W. Chung, 2012, Proceedings of the National Academy of Sciences.

INAUGURAL ARTICLE by a Recently Elected Academy Member:A public resource facilitating clinical use of genomes

Shawn M. Douglas, Jason R. Bobe, W. Chung, 2012 .

Assessment of the cPAS-based BGISEQ-500 platform for metagenomic sequencing

Jacob M. Luber, R. Drmanac, Junhua Li, 2017 .

The draft genome assembly of the critically endangered Nyssa yunnanensis, a plant species with extremely small populations endemic to Yunnan Province, China

R. Drmanac, Le Cheng, Xun Xu, 2020, GigaByte.

IterCluster: a barcode clustering algorithm for long fragment read analysis

Xun Xu, Yinlong Xie, Radoje Drmanac, 2020, PeerJ.

Accurate whole genome sequencing as the ultimate genetic test.

B. Peters, G. Church, R. Drmanac, 2015, Clinical Chemistry.

Reads on Self-Assembling DNA Nanoarrays Human Genome Sequencing Using Unchained Base

Radoje Drmanac, R. Drmanac, 2010 .

Supporting Online Material Materials and Methods Som Text Figs. S1 to S9 Tables S1 to S17 References Dataset S1 Analysis of Genetic Inheritance in a Family Quartet by Whole-genome Sequencing

P. Shannon, L. Hood, J. Roach, 2022 .

Analysis of Genetic Inheritance in a Family Quartet by Whole-Genome Sequencing

P. Shannon, J. Roach, J. Shendure, 2010, Science.

Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays

Jessica C. Ebert, B. Peters, B. Kermani, 2010, Science.

Personalized pharmacogenomics profiling using whole-genome sequencing.

B. Peters, R. Drmanac, G. Patrinos, 2014, Pharmacogenomics.

Draft genome of the Marco Polo Sheep (Ovis ammon polii)

Bronwen L. Aken, Ariel S. Schwartz, Osagie G. Izuogu, 1987, bioRxiv.

Assembly and analysis of the genome of Notholithocarpus densiflorus

B. Peters, R. Drmanac, J. Maloof, 2023, bioRxiv.

Impact of sequencing depth and technology on de novo RNA-Seq assembly

R. Drmanac, G. Wong, Xinming Liang, 2019, BMC Genomics.

Mate-pair Library Construction with Controlled Polymerization Enables Comprehensive Structural Rearrangement Detection

B. Kermani, Oleg Alferov, A. Alexeev, 2018, bioRxiv.

Advanced Whole Genome Sequencing Using a Complete PCR-free Massively Parallel 1 Sequencing ( MPS ) Workflow 2

Yuan Jiang, R. Drmanac, Wenwei Zhang, 2019 .