K. Strimmer

发表

Predicting transcription factor activities from combined analysis of microarray and ChIP data: a partial least squares approach

A. Boulesteix, K. Strimmer, 2005, Theoretical Biology and Medical Modelling.

Statistical Applications in Genetics and Molecular Biology A Shrinkage Approach to Large-Scale Covariance Matrix Estimation and Implications for Functional Genomics

K. Strimmer, J. Schäfer, 2011 .

Optimal Whitening and Decorrelation

K. Strimmer, A. Kessy, A. Lewin, 2015, 1512.00809.

TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics

K. Strimmer, A. von Haeseler, Gangolf Jobb, 2004, BMC Evolutionary Biology.

Quartet Puzzling: A Quartet Maximum-Likelihood Method for Reconstructing Tree Topologies

K. Strimmer, A. von Haeseler, A. Haeseler, 1996 .

Statistical Applications in Genetics and Molecular Biology High-Dimensional Regression and Variable Selection Using CAR Scores

K. Strimmer, V. Zuber, 2011 .

A novel exploratory method for visual recombination detection

K. Strimmer, Kristoffer Forslund, V. Moulton, 2003, Genome Biology.

Exploring the demographic history of DNA sequences using the generalized skyline plot.

K. Strimmer, O. Pybus, O. Pybus, 2001, Molecular biology and evolution.

Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment.

K. Strimmer, A. von Haeseler, A. Haeseler, 1997, Proceedings of the National Academy of Sciences of the United States of America.

Bayesian Probabilities and Quartet Puzzling

K. Strimmer, N. Goldman, A. Haeseler, 1997 .

Feature selection in omics prediction problems using cat scores and false nondiscovery rate control

K. Strimmer, M. Ahdesmaki, 2009, 0903.2003.

Ju n 20 11 12 Introduction to Graphical Modelling

K. Strimmer, M. Scutari, 2012 .

Analyses of Phylogenetics and Evolution

Rosemary M. McCloskey, K. Strimmer, O. Gascuel, 2015 .

Inferring confidence sets of possibly misspecified gene trees

K. Strimmer, A. Rambaut, 2002, Proceedings of the Royal Society of London. Series B: Biological Sciences.

Inference of demographic history from genealogical trees using reversible jump Markov chain Monte Carlo

K. Strimmer, L. Fahrmeir, R. Opgen-Rhein, 2005, BMC Evolutionary Biology.

Statistical Applications in Genetics and Molecular Biology

Korbinian Strimmer, Rainer Opgen-Rhein, K. Strimmer, 2005 .

Learning false discovery rates by fitting sigmoidal threshold functions

K. Strimmer, B. Klaus, 2011, 1104.5414.

Signal identification for rare and weak features: higher criticism or false discovery rates?

Korbinian Strimmer, Bernd Klaus, K. Strimmer, 2011, Biostatistics.

Accuracy of neighbor joining for n-taxon trees

K. Strimmer, A. Haeseler, 1996 .

Maximum Likelihood Methods in Molecular Phylogenetics

K. Strimmer, Korbinian Sebastian Strimmer, 1997 .

A Fast Sequential Algorithm for Approximate Inference of Large-Scale Phylogenies Korbinian Strimmer

K. Strimmer, 2022 .

Statistical Applications in Genetics and Molecular Biology

K. Strimmer, 2005 .

An efficient approach to simultaneous SNP selection: A case study on GAW17 data

Verena Zuber, Korbinian Strimmer, A. Pedro Duarte Silva, 2012 .

Nucleotide Substitution Models THEORY

K. Strimmer, A. Haeseler, 2001 .

Retraction Note: TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics

K. Strimmer, A. von Haeseler, Gangolf Jobb, 2015, BMC Evolutionary Biology.

Retraction Note: TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics

K. Strimmer, A. von Haeseler, Gangolf Jobb, 2015, BMC Evolutionary Biology.

APE: Analyses of Phylogenetics and Evolution in R language

Korbinian Strimmer, Emmanuel Paradis, Julien Claude, 2004, Bioinform..

Discussion on the meeting on ‘Statistical modelling and analysis of genetic data’

Terence P. Speed, Peter Donnelly, Dirk Husmeier, 2002 .

A general modular framework for gene set enrichment analysis

Korbinian Strimmer, Marit Ackermann, K. Strimmer, 2009, BMC Bioinformatics.

A whitening approach to probabilistic canonical correlation analysis for omics data integration

Korbinian Strimmer, Takoua Jendoubi, K. Strimmer, 2018, BMC Bioinformatics.

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

Martin Vingron, Arndt von Haeseler, Korbinian Strimmer, 2002, Bioinform..

fdrtool: a versatile R package for estimating local and tail area-based false discovery rates

Korbinian Strimmer, K. Strimmer, 2008, Bioinform..

Entropy Inference and the James-Stein Estimator, with Application to Nonlinear Gene Association Networks

Korbinian Strimmer, Jean Hausser, K. Strimmer, 2008, J. Mach. Learn. Res..

Partial least squares: a versatile tool for the analysis of high-dimensional genomic data

Anne-Laure Boulesteix, Korbinian Strimmer, A. Boulesteix, 2006, Briefings Bioinform..

Dating the common ancestor of SIVcpz and HIV‐1 group M and the origin of HIV‐1 subtypes by using a new method to uncover clock‐like molecular evolution

K. Strimmer, M. Salemi, A. Vandamme, 2001, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

MALDIquant: a versatile R package for the analysis of mass spectrometry data

Sebastian Gibb, Korbinian Strimmer, K. Strimmer, 2012, Bioinform..

A CART-based approach to discover emerging patterns in microarray data

Gerhard Tutz, Anne-Laure Boulesteix, Korbinian Strimmer, 2003, Bioinform..

Identifying periodically expressed transcripts in microarray time series data

Korbinian Strimmer, Konstantinos Fokianos, Sofia Wichert, 2008, Bioinform..

An empirical Bayes approach to inferring large-scale gene association networks

Korbinian Strimmer, Juliane Schäfer, K. Strimmer, 2005, Bioinform..

PAL: an object-oriented programming library for molecular evolution and phylogenetics

Korbinian Strimmer, Alexei J. Drummond, K. Strimmer, 2001, Bioinform..

Therapeutic vaccination reduces HIV sequence variability

K. Strimmer, H. Schätzl, A. Cosma, 2008, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

A unified approach to false discovery rate estimation

Korbinian Strimmer, K. Strimmer, 2008, BMC Bioinformatics.

Recombination analysis using directed graphical models.

V Moulton, K. Strimmer, C. Wiuf, 2001, Molecular biology and evolution.

Learning Large‐Scale Graphical Gaussian Models from Genomic Data

Korbinian Strimmer, Juliane Schäfer, K. Strimmer, 2005 .

Gene ranking and biomarker discovery under correlation

Korbinian Strimmer, Verena Zuber, K. Strimmer, 2009, Bioinform..

Over-optimism in bioinformatics: an illustration

Anne-Laure Boulesteix, Arthur Tenenhaus, Korbinian Strimmer, 2010, Bioinform..

Quantification of protein abundance and interaction defines a mechanism for operation of the circadian clock

A. Loudon, K. Strimmer, M. Hastings, 2022, eLife.

Quanti � cation of protein abundance 1 and interaction de � nes a mechanism 2 for operation of the circadian clock

K. Strimmer, M. Hastings, D. Spiller, 2022 .

From correlation to causation networks: a simple approximate learning algorithm and its application to high-dimensional plant gene expression data

Korbinian Strimmer, Rainer Opgen-Rhein, K. Strimmer, 2007, BMC Systems Biology.

Mass Spectrometry Analysis Using MALDIquant

Sebastian Gibb, Korbinian Strimmer, K. Strimmer, 2016, 1607.03180.

A simple data-adaptive probabilistic variant calling model

K. Strimmer, P. Stadler, S. Hoffmann, 2014, Algorithms for Molecular Biology.

USING REGULARIZED DYNAMIC CORRELATION TO INFER GENE DEPENDENCY NETWORKS FROM TIME-SERIES MICROARRAY DATA

Korbinian Strimmer, Rainer Opgen-Rhein, K. Strimmer, 2006 .

Learning causal networks from systems biology time course data: an effective model selection procedure for the vector autoregressive process

Korbinian Strimmer, Rainer Opgen-Rhein, K. Strimmer, 2007, BMC Bioinformatics.

Genetic distances and nucleotide substitution models THEORY

Arndt von Haeseler, Korbinian Strimmer, K. Strimmer, 2011 .

The Phylogenetic Handbook: Genetic distances and nucleotide substitution models

Arndt von Haeseler, Korbinian Strimmer, K. Strimmer, 2009 .

Likelihood analysis of phylogenetic networks using directed graphical models.

V Moulton, K. Strimmer, V. Moulton, 2000, Molecular biology and evolution.

Differential protein expression and peak selection in mass spectrometry data by binary discriminant analysis

Sebastian Gibb, Korbinian Strimmer, K. Strimmer, 2015, Bioinform..

CORRELATION-ADJUSTED t-SCORES IN APPLICATION TO FUNCTIONAL MAGNETIC RESONANCE IMAGING DATA

K. Strimmer, V. Zuber, 2009 .

Partial least squares: a versatile tool for the analysis of high-dimensional genomic data

A. Boulesteix, K. Strimmer, 2007, Briefings Bioinform..

Introduction to Graphical Modelling

Korbinian Strimmer, Marco Scutari, K. Strimmer, 2010, 1005.1036.

Quantification of circadian interactions and protein abundance defines a mechanism for operational stability of the circadian clock

A. Loudon, K. Strimmer, T. House, 2021, bioRxiv.

A novel algorithm for simultaneous SNP selection in high-dimensional genome-wide association studies

Korbinian Strimmer, Verena Zuber, A. Pedro Silva, 2012, BMC Bioinformatics.

Inference and Applications of Molecular Phylogenies: An Introductory Guide

K. Strimmer, D. Robertson, 2004 .

Predicting transcription factor activities from combined analysis of microarray and ChIP data: a partial least squares approach

A. Boulesteix, K. Strimmer, F. Boas, 2005, Theoretical Biology and Medical Modelling.

Boulesteix, Strimmer: Partial Least Squares: a Versatile Tool for the Analysis of High-dimensional Genomic Data Projektpartner Partial Least Squares: a Versatile Tool for the Analysis of High-dimensional Genomic Data

A. Boulesteix, K. Strimmer, 2022 .

Probabilistic Canonical Correlation Analysis: A Whitening Approach

Korbinian Strimmer, Takoua Jendoubi, K. Strimmer, 2018 .

APE: Analyses of Phylogenetics and Evolution in R language

K. Strimmer, E. Paradis, J. Claude, 2004, Bioinform..

Over-optimism in bioinformatics: an illustration

A. Boulesteix, K. Strimmer, A. Tenenhaus, 2010, Bioinform..

Improving Entropy Estimation and the Inference of Genetic Regulatory Networks

K. Strimmer, Jean Hausser, J. Hausser, 2006 .

MALDIquant: a versatile R package for the analysis of mass spectrometry data

K. Strimmer, Sebastian Gibb, 2012, Bioinform..

Boulesteix , Strimmer : Partial Least Squares : A Versatile Tool for the Analysis of High-Dimensional Genomic Data

A. Boulesteix, K. Strimmer, 2007 .

Entropy Inference and the James-Stein Estimator, with Application to Nonlinear Gene Association Networks

Jean Hausser, Korbinian Strimmer, K. Strimmer, 2008, J. Mach. Learn. Res..

Learning causal networks from systems biology time course data: an effective model selection procedure for the vector autoregressive process

K. Strimmer, R. Opgen-Rhein, 2007, BMC Bioinformatics.

TREEFINDER : A powerful graphical analysis environment for molecular phylogenetics

K. Strimmer, Gangolf Jobb, A. Haeseler, 2004 .

Modeling gene expression measurement error: a quasi-likelihood approach

Korbinian Strimmer, K. Strimmer, 2003, BMC Bioinformatics.

Nucleotide substitution models

Arndt von Haeseler, Korbinian Strimmer, K. Strimmer, 2003 .

From correlation to causation networks: a simple approximate learning algorithm and its application to high-dimensional plant gene expression data

K. Strimmer, R. Opgen-Rhein, 2007, BMC Systems Biology.

Theoretical Biology and Medical Modelling Open Access Predicting Transcription Factor Activities from Combined Analysis of Microarray and Chip Data: a Partial Least Squares Approach

A. Boulesteix, K. Strimmer, 2022 .

Variable importance and model selection by decorrelation

Korbinian Strimmer, Verena Zuber, Korbinian Strimmer, 2010 .

A shrinkage entropy approach for inferring high-dimensional association networks

Korbinian Strimmer, K. Strimmer, 2008 .