P. S. Kim

发表

Predicting coiled coils by use of pairwise residue correlations.

B. Berger, D. B. Wilson, E. Wolf, 1995, Proceedings of the National Academy of Sciences of the United States of America.

Side-chain repacking calculations for predicting structures and stabilities of heterodimeric coiled coils

P. S. Kim, A. Keating, B. Tidor, 2001, Proceedings of the National Academy of Sciences of the United States of America.

Evidence that the leucine zipper is a coiled coil.

P. S. Kim, E. O’Shea, R. Rutkowski, 1989, Science.

A spring-loaded mechanism for the conformational change of influenza hemagglutinin

P. S. Kim, C. Carr, 1993, Cell.

A designed protein with packing between left-handed and right-handed helices.

P. S. Kim, S. Sia, 2001, Biochemistry.

High-resolution protein design with backbone freedom.

P. S. Kim, B. Tidor, P. Harbury, 1998, Science.

Modular structure of transcription factors: Implications for gene regulation

P. S. Kim, A. Frankel, 1991, Cell.

Tests of the helix dipole model for stabilization of α-helices

Robert L. Baldwin, Kevin R. Shoemaker, P. S. Kim, 1987, Nature.

Influenza hemagglutinin is spring-loaded by a metastable native conformation.

P S Kim, P. S. Kim, C. Carr, 1997, Proceedings of the National Academy of Sciences of the United States of America.

Mechanisms of viral membrane fusion and its inhibition.

P S Kim, P. S. Kim, D. Eckert, 2001, Annual review of biochemistry.

A trimeric structural domain of the HIV-1 transmembrane glycoprotein

Stephen C. Blacklow, Min Lu, P. S. Kim, 1995, Nature Structural Biology.

Core Structure of gp41 from the HIV Envelope Glycoprotein

Deborah Fass, James M. Berger, P. S. Kim, 1997, Cell.

Specific intermediates in the folding reactions of small proteins and the mechanism of protein folding.

P. S. Kim, R. L. Baldwin, 1982, Annual review of biochemistry.

Intermediates in the folding reactions of small proteins.

P. S. Kim, R. L. Baldwin, R. Baldwin, 1990, Annual review of biochemistry.

Mechanism of specificity in the Fos-Jun oncoprotein heterodimer

P. S. Kim, E. O’Shea, R. Rutkowski, 1992, Cell.

A computationally directed screen identifying interacting coiled coils from Saccharomyces cerevisiae.

E. Wolf, P. S. Kim, J. R. Newman, 2000, Proceedings of the National Academy of Sciences of the United States of America.

Measurement of the β-sheet-forming propensities of amino acids

P. S. Kim, D. Minor, 1994, Nature.

X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil.

P. S. Kim, E. O’Shea, T. Alber, 1991, Science.

Reexamination of the folding of BPTI: predominance of native intermediates

P. S. Kim, J. Weissman, JS Weissman, 1991, Science.

A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants.

P. S. Kim, P. Harbury, T. Alber, 1993, Science.

A salt bridge stabilizes the helix formed by isolated C-peptide of RNase A.

P. S. Kim, R. L. Baldwin, A. Bierzyński, 1982, Proceedings of the National Academy of Sciences of the United States of America.

Nature of the charged-group effect on the stability of the C-peptide helix.

P. S. Kim, R. L. Baldwin, S. Marqusee, 1985, Proceedings of the National Academy of Sciences of the United States of America.

A buried polar interaction imparts structural uniqueness in a designed heterodimeric coiled coil.

P. S. Kim, K. Lumb, 1995, Biochemistry.

HIV Entry and Its Inhibition

P. S. Kim, D. Chan, David C Chan, 1998, Cell.

Structural characterization of the human respiratory syncytial virus fusion protein core.

P S Kim, P. S. Kim, V. Malashkevich, 2000, Proceedings of the National Academy of Sciences of the United States of America.

trilogy: Discovery of sequence–structure patterns across diverse proteins

Bonnie Berger, B. Berger, Phillip Bradley, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Electrostatic screening of charge and dipole interactions with the helix backbone.

P S Kim, D J Lockhart, P. S. Kim, 1993, Science.

Sequence requirements for coiled-coils: analysis with lambda repressor-GCN4 leucine zipper fusions.

James C. Hu, P S Kim, P. S. Kim, 1990, Science.

Does the molten globule have a native-like tertiary fold?

P. S. Kim, B. Schulman, L. Wu, 1995, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

Amide proton exchange as a probe of protein folding pathways.

P. S. Kim, 1986, Methods in enzymology.

Folding of bovine pancreatic trypsin inhibitor (BPTI) variants in which almost half the residues are alanine.

P S Kim, P. S. Kim, Y. Kuroda, 2000, Journal of molecular biology.

Identification of d-Peptide Ligands Through Mirror-Image Phage Display

Lorenz M. Mayr, P. S. Kim, T. Schumacher, 1996, Science.

Imitation of Escherichia coli Aspartate Receptor Signaling in Engineered Dimers of the Cytoplasmic Domain

P. S. Kim, A. Cochran, Andrea G. Cochran, 1996, Science.

Crystal structure of an isoleucine-zipper trimer

Tom Alber, P. S. Kim, P. Harbury, 1994, Nature.

Design of potent inhibitors of HIV-1 entry from the gp41 N-peptide region

P. S. Kim, D. Eckert, Peter Kim, 2001, Proceedings of the National Academy of Sciences of the United States of America.

Structure of the Bcr-Abl oncoprotein oligomerization domain

P. S. Kim, H. Lodish, V. Malashkevich, 2002, Nature Structural Biology.

Serine racemase: activation by glutamate neurotransmission via glutamate receptor interacting protein and mediation of neuronal migration.

S. R. Wickramasinghe, P. S. Kim, R. Huganir, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Internal stark effect measurement of the electric field at the amino terminus of an alpha helix.

P S Kim, D J Lockhart, P. S. Kim, 1992, Science.

Disulfide determinants of calcium-induced packing in alpha-lactalbumin.

P. S. Kim, B. Schulman, L. Wu, 1996, Biochemistry.

A residue-specific NMR view of the non-cooperative unfolding of a molten globule

Christopher M. Dobson, P. S. Kim, C. Dobson, 1997, Nature Structural Biology.

Proline scanning mutagenesis of a molten globule reveals non-cooperative formation of a protein's overall topology

P. S. Kim, B. Schulman, 1996, Nature Structural Biology.

Protein dissection of the antiparallel coiled coil from Escherichia coli seryl tRNA synthetase.

P. S. Kim, M. G. Oakley, 1997, Biochemistry.

Evidence that a prominent cavity in the coiled coil of HIV type 1 gp41 is an attractive drug target.

P S Kim, P. S. Kim, D. Chan, 1998, Proceedings of the National Academy of Sciences of the United States of America.

A buried polar interaction can direct the relative orientation of helices in a coiled coil.

P. S. Kim, M. G. Oakley, 1998, Biochemistry.

Evaluating the effects of a single amino acid substitution on both the native and denatured states of a protein.

P. S. Kim, T. Lin, 1991, Proceedings of the National Academy of Sciences of the United States of America.

Computational learning reveals coiled coil-like motifs in histidine kinase linker domains

M Singh, B Berger, P S Kim, 1998, Proc. Natl. Acad. Sci. USA.

Short constrained peptides that inhibit HIV-1 entry

Samuel K Sia, Peter A Carr, P. S. Kim, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Evolutionary velocity with protein language models

P. S. Kim, B. Hie, Peter S. Kim, 2021, bioRxiv.

Acetylcholine receptor-controlled ion flux in electroplax membrane vesicles: Identification and characterization of membrane properties that affect ion flux measurements

P. S. Kim, G. P. Hess, 1981, The Journal of Membrane Biology.

Structure of a murine leukemia virus receptor-binding glycoprotein at 2.0 angstrom resolution.

P. S. Kim, J. Berger, J. Cunningham, 1997, Science.

Retrovirus envelope domain at 1.7 Å resolution

P. S. Kim, S. Harrison, D. Fass, 1996, Nature Structural Biology.

Peptide ‘Velcro’: Design of a heterodimeric coiled coil

P. S. Kim, E. O’Shea, K. Lumb, 1993, Current Biology.

Intermediates in the folding of the membrane protein bacteriorhodopsin

P. S. Kim, H. Khorana, P. Booth, 1995, Nature Structural Biology.

Minimum length of a sequence-specific DNA binding peptide.

P. S. Kim, R. Rutkowski, C. McKnight, 1992, Biochemistry.

Sequence-specific DNA binding by a short peptide dimer.

P. S. Kim, C. McKnight, McKnight Cj, 1990, Science.

Passing the first milestone in protein design.

P. S. Kim, 1988, Protein engineering.

Toward development of a screen to identify randomly encoded, foldable sequences

Yoshihisa Hagihara, P. S. Kim, Y. Hagihara, 2002, Proceedings of the National Academy of Sciences of the United States of America.

NMR structure of the 35-residue villin headpiece subdomain

Paul T. Matsudaira, P. S. Kim, P. Matsudaira, 1997, Nature Structural Biology.

A trimeric structural subdomain of the HIV-1 transmembrane glycoprotein.

P. S. Kim, M. Lu, 1997, Journal of biomolecular structure & dynamics.

Preferential heterodimer formation by isolated leucine zippers from fos and jun.

P S Kim, P. S. Kim, E. O’Shea, 1989, Science.

LearnCoil-VMF: computational evidence for coiled-coil-like motifs in many viral membrane-fusion proteins

M Singh, P S Kim, B. Berger, 1999, Journal of Molecular Biology.

Palmitoylation of the HIV-1 envelope glycoprotein is critical for viral infectivity.

P. S. Kim, B. K. Chen, M. Mixon, 2000, Proceedings of the National Academy of Sciences of the United States of America.

Inactivation (Desensitization) of the acetylcholine receptor inElectrophorus electricus membrane vesicles by carbamylcholine: Comparison between ion flux and α-bungarotoxin binding

P. S. Kim, R. Noble, G. P. Hess, 1980, The Journal of Membrane Biology.

Differential subcellular targeting of PKC-ε in response to pharmacological or ischemic stimuli in intestinal epithelia

P. S. Kim, J. Matthews, K. Matlin, 2005 .

Differential subcellular targeting of PKC-epsilon in response to pharmacological or ischemic stimuli in intestinal epithelia.

P. S. Kim, J. Matthews, K. Matlin, 2005, American journal of physiology. Gastrointestinal and liver physiology.

Autonomous Folding Unit The C-peptide Helix from Ribonuclease A Considered as an References

P. S. Kim, R. Fairman, R. Shoemaker, 2008 .

The C-peptide helix from ribonuclease A considered as an autonomous folding unit.

P. S. Kim, R. L. Baldwin, E. York, 1987, Cold Spring Harbor symposia on quantitative biology.

Structural test of the parameterized-backbone method for protein design.

Tom Alber, P. S. Kim, P. Harbury, 2004, Journal of molecular biology.

Core structure of the envelope glycoprotein GP2 from Ebola virus at 1.9-A resolution.

P. S. Kim, V. Malashkevich, M. Milhollen, 1999, Proceedings of the National Academy of Sciences of the United States of America.

Inhibiting HIV-1 Entry Discovery of D-Peptide Inhibitors that Target the gp41 Coiled-Coil Pocket

P. S. Kim, V. Malashkevich, D. Eckert, 1999, Cell.

Measurement of interhelical electrostatic interactions in the GCN4 leucine zipper.

P. S. Kim, K. Lumb, 1995, Science.

Towards predicting coiled-coil protein interactions

Mona Singh, Peter S. Kim, P. S. Kim, 2001, RECOMB.

HUMAN RESPIRATORY SYNCYTIAL VIRUS FUSION PROTEIN CORE

P. S. Kim, V. Malashkevich, Xun Zhao, 2001 .

A protein dissection study of a molten globule.

P. S. Kim, Z. Peng, 1994, Biochemistry.

A kinetic explanation for the rearrangement pathway of BPTI folding

Jonathan S. Weissman, P. S. Kim, J. Weissman, 1995, Nature Structural Biology.

A third native one-disulphide intermediate in the folding of bovine pancreatic trypsin inhibitor

P. S. Kim, M. Dadlez, 1995, Nature Structural Biology.

Contribution of individual side-chains to the stability of BPTI examined by alanine-scanning mutagenesis.

P. S. Kim, J. Weissman, M. Yu, 1995, Journal of molecular biology.

Hydrogen exchange in BPTI variants that do not share a common disulfide bond

P. S. Kim, B. Schulman, 1994, Protein science : a publication of the Protein Society.

Formation of a native‐like subdomain in a partially folded intermediate of bovine pancreatic trypsin inhibitor

P. S. Kim, J. Staley, 1994, Protein science : a publication of the Protein Society.

The pro region of BPTI facilitates folding

P. S. Kim, J. Weissman, 1992, Cell.

Role of a subdomain in the folding of bovine pancreatic trypsin inhibitor

P. S. Kim, J. Staley, 1990, Nature.

Urea dependence of thiol-disulfide equilibria in thioredoxin: confirmation of the linkage relationship and a sensitive assay for structure.

P. S. Kim, T. Lin, 1989, Biochemistry.

A peptide model of a protein folding intermediate

Terrence G. Oas, P. S. Kim, T. Oas, 1988, Nature.

Dissection of a retrovirus envelope protein reveals structural similarity to influenza hemagglutinin

P. S. Kim, D. Fass, 1995, Current Biology.

Trilogy: discovery of sequence-structure patterns across diverse proteins

Bonnie Berger, Phil Bradley, Peter S. Kim, 2002, RECOMB '02.

Context-dependent secondary structure formation of a designed protein sequence

P. S. Kim, D. Minor, Peter S. Kim, 1996, Nature.

Formation of a hydrophobic cluster in denatured bovine pancreatic trypsin inhibitor.

P. S. Kim, K. Lumb, 1994, Journal of molecular biology.

α-Lactalbumin forms a compact molten globule in the absence of disulfide bonds

P. S. Kim, C. Dobson, B. Schulman, 1999, Nature Structural Biology.

A specific hydrophobic core in the alpha-lactalbumin molten globule.

P. S. Kim, L. Wu, L. Wu, 1998, Journal of molecular biology.

Local structural preferences in the alpha-lactalbumin molten globule.

P. S. Kim, L. Wu, Z. Peng, 1995, Biochemistry.

27 – Tests Of Isolated β–Sheet Formation In A Cyclic Peptide From BPTI

P. S. Kim, E. M. Goodman, 1990 .

Context is a major determinant of β-sheet propensity

P. S. Kim, D. Minor, Peter S. Kim, 1994, Nature.

A helix stop signal in the isolated S-peptide of ribonuclease A

P. S. Kim, R. L. Baldwin, 1984, Nature.

Measurement of the beta-sheet-forming propensities of amino acids.

P S Kim, P. S. Kim, D. Minor, 1994, Nature.

A thermostable 35-residue subdomain within villin headpiece.

P S Kim, P. S. Kim, P. Matsudaira, 1996, Journal of molecular biology.

A competing salt-bridge suppresses helix formation by the isolated C-peptide carboxylate of ribonuclease A.

P. S. Kim, R. L. Baldwin, A. Bierzyński, 1982, Journal of molecular biology.

Retrovirus envelope domain at 1.7 angstrom resolution.

P. S. Kim, S. Harrison, D. Fass, 1996, Nature structural biology.

The trimer-of-hairpins motif in membrane fusion: Visna virus

P. S. Kim, V. Malashkevich, Vladimir N. Malashkevich, 2001, Proceedings of the National Academy of Sciences of the United States of America.

Influence of charge on the rate of amide proton exchange.

P. S. Kim, R. L. Baldwin, 1982, Biochemistry.

Buried polar residues in coiled-coil interfaces.

P S Kim, P. S. Kim, V. Malashkevich, 2001, Biochemistry.

Interhelical Salt Bridges, Coiled-Coil Stability, and Specificity of Dimerization

P. S. Kim, F. Sönnichsen, P. Lavigne, 1996, Science.

Effects of denaturants on amide proton exchange rates: a test for structure in protein fragments and folding intermediates.

P. S. Kim, R. L. Baldwin, D. Loftus, 1986, Biochemistry.

Kinetic role of nonnative species in the folding of bovine pancreatic trypsin inhibitor.

P S Kim, P. S. Kim, J. Weissman, 1992, Proceedings of the National Academy of Sciences of the United States of America.

Structural intermediates trapped during the folding of ribonuclease A by amide proton exchange.

P. S. Kim, R. L. Baldwin, 1980, Biochemistry.

Crystal structure of the simian immunodeficiency virus (SIV) gp41 core: conserved helical interactions underlie the broad inhibitory activity of gp41 peptides.

P S Kim, P. S. Kim, V. Malashkevich, 1998, Proceedings of the National Academy of Sciences of the United States of America.

Strategy for obtaining non-native protein structures using antibody cross-reactions.

P. S. Kim, 1988, Biophysical chemistry.

Secondary structure of a leucine zipper determined by nuclear magnetic resonance spectroscopy.

P. S. Kim, E. O’Shea, F. Dahlquist, 1990, Biochemistry.

Crystal structure of GCN4-pIQI, a trimeric coiled coil with buried polar residues.

P. S. Kim, V. Malashkevich, D. Eckert, 1998, Journal of molecular biology.

Folding of a peptide corresponding to the alpha-helix in bovine pancreatic trypsin inhibitor.

P S Kim, P. S. Kim, E M Goodman, 1989, Biochemistry.

Subdomain folding of the coiled coil leucine zipper from the bZIP transcriptional activator GCN4.

P S Kim, P. S. Kim, C. Carr, 1994, Biochemistry.

Complete folding of bovine pancreatic trypsin inhibitor with only a single disulfide bond.

P. S. Kim, J. Staley, Peter S. Kim, 1992, Proceedings of the National Academy of Sciences of the United States of America.

A trimeric subdomain of the simian immunodeficiency virus envelope glycoprotein.

P. S. Kim, S. Blacklow, M. Lu, 1995, Biochemistry.

Bipartite structure of the α-lactalbumin molten globule

P. S. Kim, Zheng‐yu Peng, Lawren C. Wu, 1995, Nature Structural Biology.

Flu virus invasion: halfway there.

P. S. Kim, C. Carr, Peter S. Kim, 1994, Science.

X-ray scattering indicates that the leucine zipper is a coiled coil.

P S Kim, P. S. Kim, E. O’Shea, 1991, Proceedings of the National Academy of Sciences of the United States of America.

Response: How Much Solar Radiation Do Clouds Absorb?

P. S. Kim, K. Lumb, 1996, Science.

Repacking protein cores with backbone freedom: structure prediction for coiled coils.

P S Kim, B Tidor, P. S. Kim, 1995, Proceedings of the National Academy of Sciences of the United States of America.

Bioactive and nuclease-resistant L-DNA ligand of vasopressin.

P. S. Kim, P. S. Kim, D. Bartel, 1997, Proceedings of the National Academy of Sciences of the United States of America.

Different subdomains are most protected from hydrogen exchange in the molten globule and native states of human alpha-lactalbumin.

P. S. Kim, C. Dobson, B. Schulman, 1995, Journal of molecular biology.

Different Subdomains are Most Protected From Hydrogen Exchange in the Molten Globule and Native States of Human a-Lactalbumin Brenda

P. S. Kim, C. Dobson, C. Redfield, 2022 .

Tests of the helix dipole model for stabilization of alpha-helices.

P. S. Kim, R. L. Baldwin, E. York, 1987, Nature.

Context is a major determinant of beta-sheet propensity.

P S Kim, P. S. Kim, D. Minor, 1994, Nature.

Structural characterization of the human respiratory syncytial virus fusion protein core.

P. S. Kim, V. Malashkevich, Xun Zhao, 2000, Proceedings of the National Academy of Sciences of the United States of America.

Periodicity of amide proton exchange rates in a coiled-coil leucine zipper peptide.

P. S. Kim, E. M. Goodman, 1991, Biochemistry.

Strategy for trapping intermediates in the folding of ribonuclease and for using 1H‐NMR to determine their structures

P S Kim, P. S. Kim, R. L. Baldwin, 1983, Biopolymers.