L. Pachter
发表
Cole Trapnell,
S. Salzberg,
B. Williams,
2010,
Nature biotechnology.
Lior Pachter,
Steven N. Evans,
Valerie Hower,
2010,
BMC Bioinformatics.
Lior Pachter,
Valerie Hower,
Richard Starfield,
2011,
Bioinform..
L. Pachter,
M. Pachter,
2001,
Proceedings of the 40th IEEE Conference on Decision and Control (Cat. No.01CH37228).
Earl F. Glynn,
L. Pachter,
H. Edelsbrunner,
2008,
PloS one.
William Stafford Noble,
Nancy R. Zhang,
Stephen C. J. Parker,
2007,
Nature.
L. Pachter,
B. Sturmfels,
2005
.
B. Berger,
S. Batzoglou,
J. Mesirov,
2000
.
Cole Trapnell,
J. Rinn,
L. Pachter,
2011,
Genome Biology.
L. Pachter,
B. Sturmfels,
2005
.
Colin N. Dewey,
L. Pachter,
S. Lall,
2006,
Current Biology.
L. Pachter,
B. Sturmfels,
2003,
Proceedings of the National Academy of Sciences of the United States of America.
L. Pachter,
S. Cawley,
M. Alexandersson,
2003,
Genome research.
Colin N. Dewey,
Richard A. Moore,
James B. Brown,
2007,
Genome research.
Colin N. Dewey,
Paul E. Boardman,
David D. Shteynberg,
2004,
Nature.
Lisa M. D'Souza,
Colin N. Dewey,
Martin S. Taylor,
2004,
Nature.
Jon D. McAuliffe,
L. Pachter,
I. Ovcharenko,
2003,
Science.
Colin N. Dewey,
Simon C. Potter,
James A. Cuff,
2002
.
Cole Trapnell,
A. Arkin,
J. Lucks,
2011,
Proceedings of the National Academy of Sciences.
David R. Kelley,
Cole Trapnell,
J. Rinn,
2012,
Nature Protocols.
Paul T. Groth,
William Stafford Noble,
Colin N. Dewey,
2004,
Science.
David G Hendrickson,
Cole Trapnell,
J. Rinn,
2012,
Nature Biotechnology.
Melanie A. Huntley,
Sonja J. Prohaska,
Albert J. Vilella,
2007,
Nature.
L. Pachter,
T. Ishkhanov,
I. Dubchak,
2002,
Genome research.
Nicholas L. Bray,
L. Pachter,
I. Dubchak,
2003,
Genome research.
Lior Pachter,
David Haussler,
David A. Patterson,
2015,
J. Am. Medical Informatics Assoc..
B. Berger,
L. Pachter,
1999
.
Lior Pachter,
Nicolas Bray,
L. Pachter,
2003,
Nucleic Acids Res..
L. Pachter,
P. Melsted,
Vasilis Ntranos,
2018,
bioRxiv.
L. Pachter,
P. Melsted,
Vasilis Ntranos,
2019,
Nature Methods.
Lior Pachter,
Harold Pimentel,
Páll Melsted,
2016,
Nature Biotechnology.
L. Pachter,
Adam Roberts,
2012,
Nature Methods.
Lior Pachter,
Nicolas Bray,
Harold Pimentel,
2017,
bioRxiv.
Lior Pachter,
Dan Levy,
L. Pachter,
2007,
Adv. Appl. Math..
L. Pachter,
B. Sturmfels,
D. Levy,
2005
.
Lior Pachter,
Pascal Sturmfels,
Nicolas Bray,
2016,
bioRxiv.
L. Pachter,
I. Dubchak,
I. Ovcharenko,
2002,
Genome research.
Lior Pachter,
Ariel S. Schwartz,
L. Pachter,
2007,
Bioinform..
Lior Pachter,
Marina Alexandersson,
Fumei Lam,
2003
.
Simon Cawley,
Lior Pachter,
Marina Alexandersson,
2002
.
Lior Pachter,
Phillip R. Chandler,
Corey Schumacher,
2004
.
Lior Pachter,
Bernd Sturmfels,
L. Pachter,
2003
.
Lior Pachter,
Adam Roberts,
Lorian Schaeffer,
2013,
Bioinform..
L. Pachter,
2011,
1104.3889.
Lior Pachter,
Daniel J. Kleitman,
L. Pachter,
1998,
Discret. Comput. Geom..
Lior Pachter,
Akshay Tambe,
Sharon Aviran,
2016
.
L. Pachter,
S. Aviran,
2014,
RNA.
Cole Trapnell,
A. Arkin,
J. Lucks,
2011,
Proceedings of the National Academy of Sciences.
Colin N. Dewey,
Mira V. Han,
Matthew D. Rasmussen,
2007,
Nature.
Jill P. Mesirov,
Lior Pachter,
Bonnie Berger,
2000,
RECOMB '00.
Valentin I. Spitkovsky,
B. Berger,
E. Banks,
1999,
J. Comput. Biol..
Lior Pachter,
Páll Melsted,
Vasilis Ntranos,
2018
.
Lior Pachter,
Inna Dubchak,
Michael Brudno,
2000,
Bioinform..
I-Min A. Dubchak,
L. Pachter,
K. Frazer,
2000,
Genome research.
Lior Pachter,
Pascal Sturmfels,
Nicolas Bray,
2016,
bioRxiv.
Lior Pachter,
Cole Trapnell,
Michael B. Eisen,
2010,
PLoS biology.
L. Pachter,
Y. Mandel-Gutfreund,
Meromit Singer,
2015,
Nucleic acids research.
Lior Pachter,
Zhi Hu,
Bahram Parvin,
2010,
Molecular Cancer Research.
L. Pachter,
Gennady Gorin,
2021,
bioRxiv.
L. Pachter,
Gennady Gorin,
2020
.
David R. Kelley,
Cole Trapnell,
J. Rinn,
2012,
Nature Protocols.
Shannon R. McCurdy,
L. Pachter,
A. Molinaro,
2017,
1706.06995.
L. Pachter,
T. Chari,
Joeyta Banerjee,
2021,
bioRxiv.
Evan Z. Macosko,
A. S. Booeshaghi,
Ricky S. Adkins,
2020,
bioRxiv.
Cole Trapnell,
S. Salzberg,
L. Pachter,
2009,
Bioinform..
Lior Pachter,
Peter Kim,
L. Pachter,
1998,
Discret. Math..
Steven J. M. Jones,
Evan O. Paull,
Richard A. Moore,
2015,
The New England journal of medicine.
Colin N. Dewey,
Matthew W. Hahn,
E. Myers,
2007,
PLoS biology.
Colin N. Dewey,
L. Pachter,
2006,
Human molecular genetics.
L. Pachter,
J. Conboy,
S. Gee,
2015,
Nucleic acids research.
L. Pachter,
N. Bray,
P. Melsted,
2017,
bioRxiv.
David R. Kelley,
Cole Trapnell,
J. Rinn,
2014
.
Cole Trapnell,
S. Salzberg,
B. Williams,
2006
.
Ariel S. Schwartz,
L. Pachter,
M. Smoot,
2007
.
Lior Pachter,
Ariel S. Schwartz,
L. Pachter,
2007
.
L. Pachter,
A. Rahman,
2013
.
Lior Pachter,
Helder Pedro,
L. Pachter,
2010,
PloS one.
Lior Pachter,
Jaeyoung Do,
Ian Holmes,
2009,
PLoS Comput. Biol..
Lior Pachter,
Colin N. Dewey,
L. Pachter,
2006
.
Lior Pachter,
Radu Mihaescu,
L. Pachter,
2008,
Proceedings of the National Academy of Sciences.
L. Pachter,
Radu Mihaescu,
2017
.
L. Pachter,
A. Kleinman,
Matan Harel,
2011,
1103.2384.
L. Pachter,
N. Kitchloo,
1993
.
Lior Pachter,
Jason Morton,
Bernd Sturmfels,
2007,
Statistical applications in genetics and molecular biology.
L. Pachter,
S. Chatterji,
Sourav Chatterji,
2006
.
L. Pachter,
A. Tambe,
2017,
bioRxiv.
L. Pachter,
David Tse,
Vasilis Ntranos,
2016,
bioRxiv.
Lior Pachter,
Valentine Svensson,
Eduardo da Veiga Beltrame,
2019,
bioRxiv.
Satrajit S. Ghosh,
Nicholas N. Foster,
Evan Z. Macosko,
2020,
Nature.
Shaun D. Jackman,
Jenny Q. Qian,
S. J. Coleman,
2009
.
L. Pachter,
A. Caspi,
2006
.
Lior Pachter,
Harold Pimentel,
John G. Conboy,
2014,
Nucleic acids research.
L. Pachter,
T. Ishkhanov,
I. Dubchak,
2002
.
Lior Pachter,
V. B. Yap,
Von Bing Yap,
2004,
Genome research.
Michael I. Jordan,
Jon D. McAuliffe,
L. Pachter,
2004,
q-bio/0412012.
SPAAN: a software program for prediction of adhesins and adhesin-like proteins using neural networks
Srinivasan Ramachandran,
Kaushal Kumar,
Gaurav Sachdeva,
2004,
Bioinform..
Jon D. McAuliffe,
L. Pachter,
I. Ovcharenko,
2009
.
David J. Anderson,
Tae Kyung Kim,
L. Pachter,
2019,
Cell.
L. Pachter,
L. Luebbert,
2022
.
L. Pachter,
L. Luebbert,
2022,
bioRxiv.
A. S. Booeshaghi,
L. Pachter,
J. Gehring,
2021,
bioRxiv.
L. Pachter,
M. Pachter,
C. Schumacher,
2022
.
L. Pachter,
R. Jaenisch,
Lorian Schaeffer,
2014,
Stem cell reports.
L. Pachter,
Gennady Gorin,
T. Chari,
2023,
bioRxiv.
A. S. Booeshaghi,
L. Pachter,
I. Hallgrímsdóttir,
2022,
bioRxiv.
L. Pachter,
B. Sturmfels,
N. Beerenwinkel,
2006,
q-bio/0603034.
L. Pachter,
B. Sturmfels,
P. Huggins,
2006,
q-bio/0611032.
L. Pachter,
V. Hower,
Richard Starfield,
2012
.
L. Pachter,
Gennady Gorin,
2022
.
L. Pachter,
L. Luebbert,
2022,
bioRxiv.
B. Barrell,
M. Ashburner,
L. Pachter,
2002,
EMBO reports.
A. S. Booeshaghi,
L. Pachter,
Hongkui Zeng,
2020,
Nature.
L. Pachter,
R. Jaenisch,
Lorian Schaeffer,
2014
.
L. Pachter,
2012,
Nature Biotechnology.
Addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq
Jonathan L. Robinson,
L. Pachter,
J. Nielsen,
2020,
bioRxiv.
A. S. Booeshaghi,
L. Pachter,
J. Gehring,
2022,
bioRxiv.
L. Pachter,
Matan Harel,
Aaron Kleinman,
2012,
Annals of Combinatorics.
L. Pachter,
B. Sturmfels,
P. Huggins,
2018
.
L. Pachter,
T. Koromila,
Kelli D. Fenelon,
2022,
bioRxiv.
L. Pachter,
T. Chari,
2021,
bioRxiv.
L. Pachter,
Meromit Singer,
2015,
BMC Genomics.
Lior Pachter,
Steven Salzberg,
Cole Trapnell,
2020,
Definitions.
S. Salzberg,
L. Pachter,
C. Trapnell,
2009
.
Lior Pachter,
Shannon McCurdy,
Annette Molinaro,
2019,
Statistics in medicine.
Lior Pachter,
Inna Dubchak,
Kelly A. Frazer,
2004,
Nucleic Acids Res..
Lior Pachter,
Nicolas Bray,
Harold Pimentel,
2015,
ArXiv.
L. Pachter,
Lambda Moses,
2020,
Nature Methods.
Lior Pachter,
Nicolas Bray,
L. Pachter,
2003,
Genome research.
L. Pachter,
Gennady Gorin,
T. Chari,
2023,
bioRxiv.
Michael I. Jordan,
Aaron M. Streets,
Fabian J Theis,
2022,
Nature Biotechnology.
Aaron M. Streets,
Fabian J Theis,
Michael I. Jordan,
2021,
bioRxiv.
Lior Pachter,
Valentine Svensson,
L. Pachter,
2019,
bioRxiv.
Evan Z. Macosko,
A. S. Booeshaghi,
Ricky S. Adkins,
2021,
Nature.
Lior Pachter,
Steven N. Evans,
Valerie Hower,
2010,
BMC Bioinformatics.
Lior Pachter,
Páll Melsted,
Suzette Puente,
2016,
Nature Methods.
Simon Cawley,
Lior Pachter,
Marina Alexandersson,
2001,
J. Comput. Biol..
Lior Pachter,
Michael I. Jordan,
Jon D. McAuliffe,
2004,
Bioinform..
Lior Pachter,
Sourav Chatterji,
L. Pachter,
2006,
Genome Biology.
Lior Pachter,
Jaeyoung Do,
Ian Holmes,
2009
.
Lior Pachter,
Ruriko Yoshida,
Kord Eickmeyer,
2007,
Algorithms for Molecular Biology.
Lior Pachter,
Ruriko Yoshida,
Dan Levy,
2006,
Molecular biology and evolution.
Lior Pachter,
Bernd Sturmfels,
Peter Huggins,
2005,
PLoS Comput. Biol..
Lior Pachter,
Ruriko Yoshida,
Dan Levy,
2005,
q-bio/0508001.
Lior Pachter,
D. Levy,
R. Yoshida,
2004
.
L. Pachter,
Gennady Gorin,
T. Chari,
2022,
bioRxiv.
L. Pachter,
Gennady Gorin,
2021,
bioRxiv.
Lior Pachter,
Jase Gehring,
Sisi Chen,
2019,
Nature Biotechnology.
A. S. Booeshaghi,
L. Pachter,
P. Melsted,
2021,
Nature Biotechnology.
Lior Pachter,
Valentine Svensson,
L. Pachter,
2018,
Molecular cell.
Lior Pachter,
Páll Melsted,
Fan Gao,
2019,
bioRxiv.
Lior Pachter,
Inna Dubchak,
L. Pachter,
2002,
Briefings Bioinform..
David I. K. Martin,
L. Pachter,
Adam Roberts,
2014,
Genome research.
Lior Pachter,
Valentine Svensson,
Eduardo da Veiga Beltrame,
2019,
bioRxiv.
L. Pachter,
Fan Gao,
2021
.
Lior Pachter,
Jase Gehring,
Sisi Chen,
2018,
bioRxiv.
A. S. Booeshaghi,
L. Pachter,
2020,
bioRxiv.
L. Pachter,
Gennady Gorin,
Shawn Yoshida,
2022,
bioRxiv.
L. Pachter,
P. Melsted,
Guillaume Holley,
2022,
bioRxiv.
L. Pachter,
Gennady Gorin,
2022,
Biophysical journal.
L. Pachter,
Gennady Gorin,
John J. Vastola,
2021,
bioRxiv.
Lior Pachter,
Gennady Gorin,
L. Pachter,
2020,
Physical review. E.
Lior Pachter,
Harold Pimentel,
John G. Conboy,
2015,
1510.00696.
Lior Pachter,
Páll Melsted,
Vasilis Ntranos,
2018,
bioRxiv.
A. S. Booeshaghi,
L. Pachter,
2020,
bioRxiv.
L. Pachter,
Valentine Svensson,
Gennady Gorin,
2020,
Genome Biology.
David I. K. Martin,
L. Pachter,
Lu Zhang,
2011,
Genome research.
Lior Pachter,
Alexander Schönhuth,
Alexander Engström,
2011,
Statistical applications in genetics and molecular biology.
Lior Pachter,
Michael Q. Zhang,
Ewan Birney,
2004,
q-bio/0410008.
Lior Pachter,
Meromit Singer,
Frazer Meacham,
2011,
BMC Bioinformatics.
Lior Pachter,
Anat Caspi,
L. Pachter,
2005,
Genome research.
Lior Pachter,
Harold Pimentel,
Cole Trapnell,
2011,
Bioinform..
Lior Pachter,
Kevin C. Chen,
L. Pachter,
2005,
PLoS Comput. Biol..
Lior Pachter,
Alexander Schönhuth,
Gary P. Schroth,
2010,
PLoS Comput. Biol..
Jonathan L. Robinson,
L. Pachter,
J. Nielsen,
2021,
Genome biology.
Lior Pachter,
Lynn Yi,
Nicolas L Bray,
2017,
Genome Biology.
B. Barrell,
M. Ashburner,
L. Pachter,
2001,
Genome research.
L. Pachter,
P. Melsted,
Vasilis Ntranos,
2019,
Nature Methods.
D. J. Anderson,
L. Pachter,
R. Copley,
2021,
Science advances.
L. Pachter,
A. Stathopoulos,
J. Gergen,
2019,
bioRxiv.
Lior Pachter,
David N Keys,
L. Pachter,
2004,
Genome research.
L. Pachter,
P. Melsted,
Kristján Eldjárn Hjörleifsson,
2022,
bioRxiv.
Lior Pachter,
Nicolas Bray,
Harold Pimentel,
2015,
Bioinform..
L. Pachter,
S. Cawley,
M. Alexandersson,
2003,
Nucleic Acids Res..
E. M. Jones,
Scott W. Simpkins,
L. Pachter,
2021,
Nature Biomedical Engineering.
Lior Pachter,
Eleazar Eskin,
Leonid Kruglyak,
2020,
medRxiv.
Rachel B. Brem,
L. Pachter,
M. Eisen,
2014,
PloS one.
Lior Pachter,
Cole Trapnell,
Sharon Aviran,
2012,
Current protocols in chemical biology.
L. Pachter,
P. Melsted,
Harold Pimentel,
2016,
bioRxiv.
A. S. Booeshaghi,
L. Pachter,
Kyung Hoi Joseph Min,
2022,
bioRxiv.
Lior Pachter,
Ian Holmes,
Robert K. Bradley,
2008,
Bioinform..
L. Pachter,
Sourav Chatterji,
2007,
Genomics.
Lior Pachter,
Bernd Sturmfels,
L. Pachter,
2004,
SIAM Rev..
Lior Pachter,
Bernd Sturmfels,
Niko Beerenwinkel,
2007,
BMC Evolutionary Biology.
Lior Pachter,
Atif Rahman,
L. Pachter,
2016,
bioRxiv.
Lior Pachter,
Inna Dubchak,
Ivan Ovcharenko,
2002
.
Lior Pachter,
Adam P. Arkin,
Stephanie M. Willerth,
2010,
PloS one.
David J. Anderson,
L. Pachter,
R. Copley,
2021,
bioRxiv.
Lior Pachter,
Valentine Svensson,
Sarah A Teichmann,
2016,
Nature Biotechnology.
Lior Pachter,
Páll Melsted,
Nicolas L Bray,
2016,
Nature Biotechnology.
Simon Cawley,
Lior Pachter,
L. Pachter,
2003,
ECCB.
Lior Pachter,
Brielin C. Brown,
Nicolas L Bray,
2018,
bioRxiv.
Nicholas J. McGlincy,
L. Pachter,
Nicki Naddaf,
2017,
Nature Structural & Molecular Biology.
Lior Pachter,
Jason Morton,
Bernd Sturmfels,
2007,
SIAM J. Discret. Math..
Lior Pachter,
Jason Morton,
Bernd Sturmfels,
2006,
Probabilistic Graphical Models.
Lior Pachter,
Valentine Svensson,
Gennady Gorin,
2020,
Genome Biology.
Lior Pachter,
Valentine Svensson,
Gennady Gorin,
2019,
bioRxiv.
L. Pachter,
David Tse,
Vasilis Ntranos,
2016,
bioRxiv.
Lior Pachter,
A. S. Booeshaghi,
Jase Gehring,
2020,
Scientific Reports.
L. Pachter,
A. S. Booeshaghi,
N. B. Lubock,
2020,
medRxiv.
L. Pachter,
K. Frazer,
I. Dubchak,
2004
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Lior Pachter,
Michael I. Jordan,
Michael I Jordan,
2005,
Proceedings of the National Academy of Sciences of the United States of America.
Lior Pachter,
Bo Li,
Akshay Tambe,
2016,
bioRxiv.
Lior Pachter,
Nicholas Eriksson,
Niko Beerenwinkel,
2007,
PLoS Comput. Biol..
A. S. Booeshaghi,
L. Pachter,
B. Renton,
2020,
medRxiv.
Lior Pachter,
Cole Trapnell,
Kunio Kondoh,
2015,
Science.
Lior Pachter,
Eugene W. Myers,
Ariel S. Schwartz,
2005,
q-bio/0510052.
Lior Pachter,
Jotun Hein,
Rahul Satija,
2008,
Bioinform..
L. Pachter,
Lynn Yi,
Noah Olsman,
2021,
bioRxiv.
Tanja Gesell,
Arndt von Haeseler,
S. Salzberg,
2006
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Lior Pachter,
L. Pachter,
1997,
Electron. J. Comb..
Lior Pachter,
Bernd Sturmfels,
L. Pachter,
2004,
Proceedings of the National Academy of Sciences of the United States of America.
Lior Pachter,
Atif Rahman,
Ingileif Hallgrímsdóttir,
2017,
bioRxiv.
Lior Pachter,
Tara Chari,
L. Pachter,
2021
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L. Pachter,
R. Jaenisch,
Lorian Schaeffer,
2014,
Stem Cell Reports.
Adam L. Maclean,
L. Pachter,
I. Hallgrímsdóttir,
2023,
bioRxiv.
Simon Cawley,
Lior Pachter,
Marina Alexandersson,
2004,
Genome research.
N. Jewell,
L. Pachter,
J. Olsen,
2015,
PloS one.
L. Pachter,
E. Purdom,
B. Ottesen,
2017,
Arthritis Research & Therapy.
A. S. Booeshaghi,
L. Pachter,
Fan Gao,
2023,
bioRxiv.
L. Pachter,
Gennady Gorin,
2023,
bioRxiv.
L. Pachter,
Gennady Gorin,
John J. Vastola,
2023,
bioRxiv.
L. Pachter,
Gennady Gorin,
T. Chari,
2023,
bioRxiv.
L. Pachter,
W. Holmes,
Gennady Gorin,
2021,
2103.10992.
Lior Pachter,
Audrey Qiuyan Fu,
L. Pachter,
2016,
Statistical applications in genetics and molecular biology.
A. S. Booeshaghi,
L. Pachter,
2022,
bioRxiv.
Michael A. Beer,
M. Gerstein,
Z. Weng,
2023,
bioRxiv.
J. Mycielski,
L. Pachter,
R. Dawson,
1996
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Lior Pachter,
David E Speyer,
David E. Speyer,
2003,
Appl. Math. Lett..
Lior Pachter,
Adam Roberts,
Harvey Feng,
2013,
BMC Bioinformatics.
L. Pachter,
A. Fairhall,
C. Lois,
2023,
bioRxiv.
L. Pachter,
Harold Pimentel,
Lynn Yi,
2016,
bioRxiv.
L. Pachter,
A. Stathopoulos,
J. Gergen,
2020,
eLife.
Lior Pachter,
Harold Pimentel,
Warren A. McGee,
2019,
bioRxiv.
L. Pachter,
T. Ishkhanov,
I. Dubchak,
2002
.
Lior Pachter,
L. Pachter,
2006,
q-bio/0612046.
Lior Pachter,
Marina Alexandersson,
Nicholas L. Bray,
2005
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Lior Pachter,
Sourav Chatterji,
L. Pachter,
2004,
RECOMB.
Lior Pachter,
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