K. Karplus

Richard Hughey, Kevin Karplus, Don Speck, 1996, Proceedings of International Conference on Application Specific Systems, Architectures and Processors: ASAP '96.

Nucleotide excision repair "a legacy of creativity".

K. Karplus, C. Limoli, M. Kashani-Sabet, 2001, Mutation research.

SAM-T08, HMM-based protein structure prediction

Kevin Karplus, K. Karplus, 2009, Nucleic Acids Res..

SAM-T 08 , HMM-based Protein Structure Prediction

K. Karplus, 2009 .

Combining local‐structure, fold‐recognition, and new fold methods for protein structure prediction

Jonathan Casper, Mark Diekhans, Richard Hughey, 2003, Proteins.

Evaluating Regularizers for Estimating Distributions of Amino Acids

Kevin Karplus, K. Karplus, 1995, ISMB.

Automated Forward and Reverse Ratcheting of DNA in a Nanopore at Five Angstrom Precision1

Mark Akeson, Kevin Karplus, K. Karplus, 2012, Nature Biotechnology.

Identification and Characterization of RbmA, a Novel Protein Required for the Development of Rugose Colony Morphology and Biofilm Structure in Vibrio cholerae

K. Karplus, G. Schoolnik, F. Yildiz, 2006, Journal of bacteriology.

Improving protein secondary structure prediction using a simple k-mer model

Martin Madera, Julian Gough, Kevin Karplus, 2010, Bioinform..

Identification of prokaryotic small proteins using a comparative genomic approach

Kevin Karplus, Fitnat H. Yildiz, Josue Samayoa, 2011, Bioinform..

Predicting reliable regions in protein sequence alignments

Melissa S. Cline, Richard Hughey, Kevin Karplus, 2002, Bioinform..

CAFASP‐1: Critical assessment of fully automated structure prediction methods

D Fischer, B Rost, L Rychlewski, 1999, Proteins.

Scoring hidden Markov models

Richard Hughey, Kevin Karplus, Christian Barrett, 1997, Comput. Appl. Biosci..

Analysis of nanopore data using hidden Markov models

Kevin Karplus, Jacob Schreiber, K. Karplus, 2015, Bioinform..

Optimal Hidden Markov Models for All Sequences of Known Structure

Cyrus Chothia, Richard Hughey, Kevin Karplus, 2000 .

What is the value added by human intervention in protein structure prediction?

K Karplus, C Barrett, R Hughey, 2001, Proteins.

Pokefind: a novel topological filter for use with protein structure prediction

Kevin Karplus, Firas Khatib, Carol A. Rohl, 2009, Bioinform..

A ?ex-ible search technique based on generalized profiles

Kevin Karplus, Nicolas Moeri, Phillip Bucher, 1996 .

SAM‐T04: What is new in protein–structure prediction for CASP6

Richard Hughey, Kevin Karplus, Martina Koeva, 2005, Proteins.

Evaluating local structure alphabets for protein structure prediction

K. Karplus, R. Karchin, 2003 .

PREDICT-2ND: a tool for generalized protein local structure prediction

Kevin Karplus, Rachel Karchin, Christian Barrett, 2008, Bioinform..

Calibrating E-values for hidden Markov models using reverse-sequence null models

Richard Hughey, Kevin Karplus, Rachel Karchin, 2005, Bioinform..

Evaluation of protein multiple alignments by SAM-T99 using the BAliBASE multiple alignment test set

Kevin Karplus, Birong Hu, K. Karplus, 2001, Bioinform..

The delta rule development system for speech synthesis from text

S.R. Hertz, J. Kadin, K.J. Karplus, 1985, Proceedings of the IEEE.

SPrCY: comparison of structural predictions in the Saccharomyces cerevisiae genome

Nathan A. Baker, Kevin Karplus, Todd J. Dolinsky, 2004, Bioinform..

Segmentation of Noisy Signals Generated By a Nanopore

Kevin Karplus, Jacob Schreiber, K. Karplus, 2015, bioRxiv.

CHISEL: an extension to the programming language C for VLSI layout

Kevin John Karplus, K. Karplus, 1983 .

Optimal wiring between rectangles

Alan Siegel, Danny Dolev, Jeffrey D. Ullman, 1981, STOC '81.

Logic minimization using two-column rectangle replacement

Kevin Karplus, Søren Søe, K. Karplus, 1991, 28th ACM/IEEE Design Automation Conference.

Predicting protein structure using only sequence information

K Karplus, C Barrett, R Hughey, 1999, Proteins.

Kevin Karplus Computer Science Department Cornell University Ithaca , New York 14853 Alex Strong Computer Science Department Stanford University Stanford , California 94305 Introduction

K. Karplus, A. Strong, 2007 .

Efficient hardware for multiway jumps and pre-fetches

Alexandru Nicolau, Kevin Karplus, K. Karplus, 1985, MICRO 18.

Improving physical realism, stereochemistry, and side‐chain accuracy in homology modeling: Four approaches that performed well in CASP8

K. Karplus, M. Tyka, Srivatsan Raman, 2009, Proteins.

PROTEINS: Structure, Function, and Bioinformatics Suppl 7:135–142 (2005) SAM-T04: What Is New in Protein–Structure Prediction for

K. Karplus, R. Hughey, M. Koeva, 2022 .

Applying undertaker cost functions to model quality assessment

K. Karplus, John G Archie, 2009, Proteins.

Contact prediction using mutual information and neural nets

Kevin Karplus, George Shackelford, K. Karplus, 2007, Proteins.

Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure.

K. Karplus, R. Hughey, Julian Gough, 2001, Journal of molecular biology.

Xtmap: generate-and-test mapper for table-lookup gate arrays

K. Karplus, K. Karplus, 1993, Digest of Papers. Compcon Spring.

Digital Synthesis of Plucked-String and Drum Timbers

Kevin Karplus, Alex Strong, K. Karplus, 1983 .

Kestrel: design of an 8-bit SIMD parallel processor

Eric Rice, Richard Hughey, Kevin Karplus, 1997, Proceedings Seventeenth Conference on Advanced Research in VLSI.

A semi-systolic decoder for the PDSC-73 error-correcting code

Habib Krit, Kevin Karplus, K. Karplus, 1991, Discret. Appl. Math..

Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology

K. Karplus, Michael Brown, Kimmen Sjölander, 1996, Comput. Appl. Biosci..

Automated Forward and Reverse Ratcheting of DNA in a Nanopore at Five Angstrom Precision

K. Karplus, K. Lieberman, M. Akeson, 2012, Nature Biotechnology.