I. Mian

发表

Hidden Markov models in computational biology. Applications to protein modeling.

D. Haussler, A. Krogh, M. Brown, 1993, Journal of molecular biology.

A hidden Markov model that finds genes in E. coli DNA.

D. Haussler, A. Krogh, I. Mian, 1994, Nucleic acids research.

Stochastic context-free grammars for tRNA modeling.

R. C. Underwood, Rebecca C. Underwood, D. Haussler, 1994, Nucleic acids research.

Recent Methods for RNA Modeling Using Stochastic Context-Free Grammars

David Haussler, Michael Brown, Kimmen Sjölander, 1994, CPM.

THE APPLICATION OF STOCHASTIC CONTEXT-FREE GRAMMARS TO FOLDING, ALIGNING AND MODELING HOMOLOGOUS RNA SEQUENCES

R. C. Underwood, D. Haussler, R. Hughey, 1993 .

Identifying marker genes in transcription profiling data using a mixture of feature relevance experts.

I. Mian, M. L. Chow, E. Moler, 2001, Physiological genomics.

Evaluation of normalization methods for cDNA microarray data by k-NN classification

Wei Wu, Eric P. Xing, Mina J. Bissell, 2005, BMC Bioinformatics.

Integrating naive Bayes models and external knowledge to examine copper and iron homeostasis in S. cerevisiae.

I. Mian, D. Radisky, E. Moler, 2000, Physiological genomics.

Protein modeling using hidden Markov models: analysis of globins

D. Haussler, K. Sjolander, A. Krogh, 1993, [1993] Proceedings of the Twenty-sixth Hawaii International Conference on System Sciences.

Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology

David Haussler, Anders Krogh, Michael Brown, 1996, Comput. Appl. Biosci..

Structure, function and properties of antibody binding sites.

I. Mian, A. Olson, A. Bradwell, 1991, Journal of molecular biology.

Exploratory differential gene expression analysis in microarray experiments with no or limited replication

I. Mian, A. Loguinov, C. Vulpe, 2004, Genome Biology.

Robust Sparse Hyperplane Classifiers: Application to Uncertain Molecular Profiling Data

Michael I. Jordan, Laurent El Ghaoui, Chiranjib Bhattacharyya, 2004, J. Comput. Biol..

Integrated analysis of transcript profiling and protein sequence data

Michael I. Jordan, I. Mian, C. Bhattacharyya, 2003, Mechanisms of Ageing and Development.

Communication theory and multicellular biology.

I. Mian, C. Rose, Christopher Rose, 2011, Integrative biology : quantitative biosciences from nano to macro.

A Nuclear Targeting Determinant for SATB1, a Genome Organizer in the T Cell Lineage

I. Mian, T. Kohwi-Shigematsu, Y. Nakayama, 2005, Cell cycle.

Analysis of molecular profile data using generative and discriminative methods.

I. Mian, M. L. Chow, E. Moler, 2000, Physiological genomics.

Tissue architecture: the ultimate regulator of breast epithelial function.

I. Mian, M. Bissell, A. Rizki, 2003, Current opinion in cell biology.

S. cerevisiaeto examine copper and iron homeostasis in Integrating naive Bayes models and external

I. Mian, D. Radisky, E. Moler, 2015 .

that Vhs Is a Nuclease Virus: Genetic and Biochemical Evidence Shutoff (Vhs) Protein of Herpes Simplex mRNA Degradation by the Virion Host

I. Mian, P. Feng, D. Everly, 2014 .

mRNA Degradation by the Virion Host Shutoff (Vhs) Protein of Herpes Simplex Virus: Genetic and Biochemical Evidence that Vhs Is a Nuclease

I. Mian, P. Feng, G. S. Read, 2002, Journal of Virology.

Comparative analysis of editosome proteins in trypanosomatids.

Reza Salavati, Kenneth Stuart, Achim Schnaufer, 2003, Nucleic acids research.

The thorny path linking cellular senescence to organismal aging

I. Mian, J. Campisi, C. Patil, 2005, Mechanisms of Ageing and Development.

Schizosaccharomyces pombe Rtf2 mediates site-specific replication termination by inhibiting replication restart

I. Mian, T. Eydmann, J. Dalgaard, 2009, Proceedings of the National Academy of Sciences.

LMNA mutations in atypical Werner's syndrome

I. Mian, B. Kennedy, N. B. Hanson, 2003, The Lancet.

Analysis of Telomerase in Candida albicans: Potential Role in Telomere End Protection

I. Mian, N. Lue, Sunitha M Singh, 2002, Eukaryotic Cell.

A Conserved Telomerase Motif within the Catalytic Domain of Telomerase Reverse Transcriptase Is Specifically Required for Repeat Addition Processivity

I. Mian, N. Lue, You-Chin Lin, 2003, Molecular and Cellular Biology.

Identification of Functionally Important Domains in the N-Terminal Region of Telomerase Reverse Transcriptase

I. Mian, N. Lue, J. Xia, 2000, Molecular and Cellular Biology.

Identifying differentially expressed genes in cDNA microarray experiments authors.

T P Speed, I S Mian, I. Mian, 2001, Science of aging knowledge environment : SAGE KE.

C. elegans clk-2, a gene that limits life span, encodes a telomere length regulator similar to yeast telomere binding protein Tel2p

I. Mian, A. Dernburg, J. Campisi, 2001, Current Biology.

SKI pathways inducing progression of human melanoma

I. Mian, E. Medrano, Q. Lin, 2005, Cancer and Metastasis Reviews.

Text-based analysis of genes, proteins, aging, and cancer

I. Mian, L. Grate, J. Semeiks, 2005, Mechanisms of Ageing and Development.

discriminative methods Analysis of molecular profile data using generative and

Christophe Ambroise, Heping Zhang, Geoffrey J. McLachlan, 2015 .

Structural Divergence in Vertebrate Phylogeny of a Duplicated Prototype Galectin

I. Mian, S. Newman, R. Bhat, 2014, Genome biology and evolution.

Potential Role in Telomere End Protection Candida albicans Analysis of Telomerase in

I. Mian, N. Lue, Sunitha M Singh, 2014 .

Ageing: New mice for old questions

I. Mian, G. Martin, 1997, Nature.

Analysis of telomerase processivity: mechanistic similarity to HIV-1 reverse transcriptase and role in telomere maintenance.

I. Mian, Y. Peng, N. Lue, 2001, Molecular cell.

Telomerase Reverse Transcriptase Domains in the N-Terminal Region of Identification of Functionally Important

I. Mian, N. Lue, J. Xia, 2000 .

Signaling with Identical Quanta : lower bounds with energy constraints

I. Mian, C. Rose, 2013 .

Stochastic Context-Free Grammars for Modeling RN

David Haussler, Michael Brown, Yasubumi Sakakibara, 1994, HICSS.

Effects of dispersed point substitutions in Repeat 1 of human interphotoreceptor retinoid binding protein (IRBP).

I. Mian, J. Boatright, J. Nickerson, 2000, Molecular vision.

Identification of the yeast cytidine deaminase CDD1 as an orphan C-->U RNA editase.

I. Mian, Y. Yang, H. C. Smith, 2001, Nucleic acids research.

Comparative sequence analysis of ribonucleases HII, III, II PH and D.

I. Mian, 1997, Nucleic acids research.

Repeat Addition Processivity Transcriptase Is Specifically Required for Catalytic Domain of Telomerase Reverse A Conserved Telomerase Motif within the

I. Mian, N. Lue, You-Chin Lin, 2003 .

Origination of Organismal Form : Beyond the Gene in Developmental and Evolutionary Biology

I. Mian, D. Radisky, M. Bissell, 2014 .

Association of human aging with a functional variant of klotho

I. Mian, L. Fried, D. Arking, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Using Dirichlet Mixture Priors to Derive Hidden Markov Models for Protein Families

David Haussler, Anders Krogh, Michael Brown, 1993, ISMB.

A human breast cell model of preinvasive to invasive transition.

Roy A Jensen, Joe W Gray, Koei Chin, 2008, Cancer research.

Second primary malignancy after Hodgkin's disease, ovarian cancer and cancer of the testis: a population-based cohort study.

DM Blei, K Franks, MI Jordan, 1987, British Journal of Cancer.

A Model for Interphase Chromosomes and Evaluation of Radiation-Induced Aberrations

I. Mian, S. J. Park, B. Rydberg, 2002, Radiation research.

RNA Modeling Using Gibbs Sampling and Stochastic Context Free Grammars

David Haussler, Mark Herbster, I. Saira Mian, 1994, ISMB.

A Z-DNA binding domain present in the human editing enzyme, double-stranded RNA adenosine deaminase.

I. Mian, A. Rich, K. Nishikura, 1997, Proceedings of the National Academy of Sciences of the United States of America.

Statistical modeling and analysis of the LAGLIDADG family of site-specific endonucleases and identification of an intein that encodes a site-specific endonuclease of the HNH family.

I S Mian, I. Mian, M. Moser, 1997, Nucleic acids research.

Statistic Modeling, Phylogenetic Analysis and Strjucture Prediction of a Protein Splicing Domain Common to Infeins and Hedgehog Proteins

I. Saira Mian, Richard Hughey, M. J. Moser, 1997, J. Comput. Biol..

Conserved N-terminal Motifs of Telomerase Reverse Transcriptase Required for Ribonucleoprotein Assembly in Vivo *

I. Mian, N. Lue, Yun Peng, 2003, The Journal of Biological Chemistry.

AZU-1: a candidate breast tumor suppressor and biomarker for tumor progression.

I. Mian, Huei-Mei Chen, M. Bissell, 2000, Molecular biology of the cell.

I. Mian, 1993, Trends in biochemical sciences.

Prediction of structural and functional relationships of Repeat 1 of human interphotoreceptor retinoid-binding protein (IRBP) with other proteins.

I. Mian, J. Boatright, J. Nickerson, 2000, Molecular vision.

Stochastic context-free grammars for modeling RNA

D. Haussler, R. C. Underwood, I. S. Mian, 1993, 1994 Proceedings of the Twenty-Seventh Hawaii International Conference on System Sciences.

Hidden Markov Models in Computational Biology: Applications to Protein Modeling UCSC-CRL-93-32

Michael P. S. Brown, Anders Krogh, I. Saira Mian, 1993 .

Chromatin conformation in living cells: support for a zig-zag model of the 30 nm chromatin fiber.

I. Mian, B. Rydberg, A. Chatterjee, 1998, Journal of molecular biology.

Transition A Human Breast Cell Model of Preinvasive to Invasive

David J. Chen, I. Mian, K. Chin, 2008 .

The premature ageing syndrome protein, WRN, is a 3′→5′ exonuclease

I. Saira Mian, Junko Oshima, Judith Campisi, 1998, Nature Genetics.

The Multiple Roles of the Oncogenic Protein SKI in Human Malignant Melanoma

I. Mian, E. Medrano, Q. Lin, 2006 .

The spectrum of WRN mutations in Werner syndrome patients

Markus Schuelke, Thomas Dorn, Johannes Ring, 2006, Human mutation.

Structural Divergence in Vertebrate Phylogeny of a Duplicated Prototype Galectin

I. Mian, A. Wagner, S. Newman, 2014, Genome biology and evolution.

Virus genome sequence classification using features based on nucleotides, words and compression

I. S. Mian, T. Wang, M. Herbster, 2018, 1809.03950.

The proofreading domain of Escherichia coli DNA polymerase I and other DNA and/or RNA exonuclease domains.

I S Mian, I. Mian, M. Moser, 1997, Nucleic acids research.

Homeostatic Imbalance between Apoptosis and Cell Renewal in the Liver of Premature Aging XpdTTD Mice

I. Mian, Stuart K. Kim, P. Cohen, 2008, PloS one.

A linear programming approach for estimating the structure of a sparse linear genetic network from transcript profiling data

Nagasuma R. Chandra, Chiranjib Bhattacharyya, Sahely Bhadra, 2009, Algorithms for Molecular Biology.

in T-Cell Apoptosis Causing Detachment from Chromatin Early PDZ Domain-Mediated Dimerization, SATB1 Cleavage by Caspase 6 Disrupts

I. Mian, M. Sikorska, S. Galande, 2014 .

SATB1 Cleavage by Caspase 6 Disrupts PDZ Domain-Mediated Dimerization, Causing Detachment from Chromatin Early in T-Cell Apoptosis

I. Mian, M. Sikorska, S. Galande, 2001, Molecular and Cellular Biology.

Simultaneous classification and relevant feature identification in high-dimensional spaces: application to molecular profiling data

Michael I. Jordan, Chiranjib Bhattacharyya, Mina J. Bissell, 2003, Signal Process..

Networks of genetic loci and the scientific literature

I. Mian, L. Grate, J. Semeiks, 2011 .

NuMA influences higher order chromatin organization in human mammary epithelium.

D. W. Knowles, I. Mian, D. Knowles, 2006, Molecular biology of the cell.

Arabidopsis thaliana exosome subunit AtRrp4p is a hydrolytic 3'-->5' exonuclease containing S1 and KH RNA-binding domains.

I. Mian, Julia A Chekanova, D. Belostotsky, 2002, Nucleic acids research.

Representing and Reasoning about Protein Families Using Generative and Discriminative Methods

Inna Dubchak, I. Saira Mian, I. Mian, 2000, J. Comput. Biol..

The Fanconi anemia complementation group A protein contains a peroxidase domain.

I S Mian, I. Mian, M. Moser, 1998, Molecular genetics and metabolism.

The C terminus of the nuclear protein NuMA: Phylogenetic distribution and structure

I. Mian, S. Lelièvre, C. Bator-Kelly, 2004, Protein science : a publication of the Protein Society.

A fundamental framework for molecular communication channels: Timing & payload

Christopher Rose, I. Saira Mian, I. Mian, 2015, 2015 IEEE International Conference on Communications (ICC).

Taking U out, with two nucleases?

Elizabeth A. Worthey, I. Saira Mian, Reza Salavati, 2006, BMC Bioinformatics.

Sequence, structural, functional, and phylogenetic analyses of three glycosidase families.

I S Mian, I. Mian, 1998, Blood cells, molecules & diseases.

Statistical Modelling and phylogenetic Analysis of a Deaminase Domain

A. Chatterjee, I. Saira Mian, W. R. Holley, 1998, J. Comput. Biol..

Expression recA R1 Is a Novel Regulator of radiodurans Deinococcus The IrrE Protein of

I. Mian, A. Earl, J. Battista, 2014 .

The IrrE Protein of Deinococcus radiodurans R1 Is a Novel Regulator of recA Expression

I. Mian, A. Earl, J. Battista, 2002, Journal of bacteriology.

The high binding affinity of human ribosomal protein S3 to 7,8-dihydro-8-oxoguanine is abrogated by a single amino acid change.

I. Mian, Mu Wang, W. A. Deutsch, 2006, DNA repair.

Conversion of the Bifunctional 8-Oxoguanine/β-δ Apurinic/Apyrimidinic DNA Repair Activities ofDrosophila Ribosomal Protein S3 into the Human S3 Monofunctional β-Elimination Catalyst through a Single Amino Acid Change*

I. Mian, M. Kelley, W. A. Deutsch, 2001, The Journal of Biological Chemistry.

Explorer Comparative analysis of editosome proteins in trypanosomatids

I. Mian, A. Schnaufer, K. Stuart, 2017 .

Timing Channels with Multiple Identical Quanta pdf

Christopher Rose, I. Saira Mian, Ruochen Song, 2012, ArXiv.

An additive exponential noise channel with a transmission deadline

Christopher Rose, Yi-Lin Tsai, I. Saira Mian, 2011, 2011 IEEE International Symposium on Information Theory Proceedings.

Conversion of the bifunctional 8-oxoguanine/beta-delta apurinic/apyrimidinic DNA repair activities of Drosophila ribosomal protein S3 into the human S3 monofunctional beta-elimination catalyst through a single amino acid change.

I. Mian, M. Kelley, W. A. Deutsch, 2001, The Journal of biological chemistry.

Ensemble attribute profile clustering: discovering and characterizing groups of genes with similar patterns of biological features

Mina J. Bissell, I. Saira Mian, J. R. Semeiks, 2006, BMC Bioinformatics.

MPHASYS: a mouse phenotype analysis system

Harry van Steeg, I. Saira Mian, Jan Vijg, 2007, BMC Bioinformatics.

Capacity Bounds on Point-to-Point Communication Using Molecules

Mustafa Ozmen, Christopher Rose, I. S. Mian, 2019, Proceedings of the IEEE.

Evaluation of normalization methods for cDNA microarray data by k-NN classification

E. Xing, I. Mian, Wei Wu, 2005, BMC Bioinform..

Simultaneous Relevant Feature Identification and Classification in High-Dimensional Spaces

Michael I. Jordan, Chiranjib Bhattacharyya, I. Saira Mian, 2002, WABI.