M. Kanehisa

发表

DNA Microarray Analysis of Cyanobacterial Gene Expression during Acclimation to High Light

Y. Hihara, A. Kamei, M. Kanehisa, 2001, Plant Cell.

Graph-driven features extraction from microarray data

M. Kanehisa, Jean-Philippe Vert, 2002, physics/0206055.

A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters.

M. Kanehisa, H. Ogata, W. Fujibuchi, 2000, Nucleic acids research.

KEGG: new perspectives on genomes, pathways, diseases and drugs

Minoru Kanehisa, Miho Furumichi, Mao Tanabe, 2016, Nucleic Acids Res..

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences.

M. Kanehisa, Yoko Sato, Kanae Morishima, 2016, Journal of molecular biology.

Chemical and genomic evolution of enzyme‐catalyzed reaction networks

M. Kanehisa, 2013, FEBS letters.

Prediction of protein function from sequence properties. Discriminant analysis of a data base.

M. Kanehisa, C. DeLisi, P. Klein, 1984, Biochimica et biophysica acta.

Multiple Alignment by Parallel Simulated Annealing

M. Kanehisa, M. Hoshida, M. Ishikawa, 1991 .

Network analysis of adverse drug interactions.

M. Kanehisa, Shujiro Okuda, S. Goto, 2008, Genome informatics. International Conference on Genome Informatics.

A Systematic Analysis of Gene Functions by the Metabolic Pathway Database

M. Kanehisa, S. Goto, 1997 .

Development of a chemical structure comparison method for integrated analysis of chemical and genomic information in the metabolic pathways.

M. Kanehisa, S. Goto, Y. Okuno, 2003, Journal of the American Chemical Society.

Prediction of splice junctions in mRNA sequences.

M. Kanehisa, C. DeLisi, K. Nakata, 1985, Nucleic acids research.

Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework

Yoshihiro Yamanishi, Susumu Goto, Masaaki Kotera, 2010, Bioinform..

Using the KEGG Database Resource

M. Kanehisa, M. Tanabe, Kiyoko Aoki, 2005, Current protocols in bioinformatics.

Observing metabolic functions at the genome scale

M. Kanehisa, J. Nacher, J. Schwartz, 2007, Genome Biology.

A knowledge base for predicting protein localization sites in eukaryotic cells

M. Kanehisa, K. Nakai, 1992, Genomics.

A new efficient probabilistic model for mining labeled ordered trees applied to glycobiology

Kiyoko F. Aoki-Kinoshita, Hiroshi Mamitsuka, Nobuhisa Ueda, 2008, TKDD.

Extraction of correlated gene clusters by multiple graph comparison.

M. Kanehisa, S. Goto, A. Nakaya, 2001, Genome informatics. International Conference on Genome Informatics.

Prediction of higher order functional networks from genomic data.

M. Kanehisa, 2001, Pharmacogenomics.

Graph-Driven Feature Extraction From Microarray Data Using Diffusion Kernels and Kernel CCA

Jean-Philippe Vert, Minoru Kanehisa, M. Kanehisa, 2002, NIPS.

SIMCOMP/SUBCOMP: chemical structure search servers for network analyses

Susumu Goto, Minoru Kanehisa, Masahiro Hattori, 2010, Nucleic Acids Res..

Heuristics for chemical compound matching.

M. Kanehisa, S. Goto, Y. Okuno, 2003, Genome informatics. International Conference on Genome Informatics.

AAindex: Amino Acid Index Database

Hiroyuki Ogata, Minoru Kanehisa, Shuichi Kawashima, 1999, Nucleic Acids Res..

Linking databases and organisms: GenomeNet resources in Japan.

M. Kanehisa, 1997, Trends in biochemical sciences.

Analysis of amino acid indices and mutation matrices for sequence comparison and structure prediction of proteins.

M. Kanehisa, K. Tomii, 1996, Protein engineering.

Cluster analysis of amino acid indices for prediction of protein structure and function.

M. Kanehisa, K. Nakai, A. Kidera, 1988, Protein engineering.

Expert system for predicting protein localization sites in gram‐negative bacteria

M. Kanehisa, K. Nakai, 1991, Proteins.

Application of Parallelized DP and A Algorithm to Multiple Sequence Alignment

Hiroshi Nakashima, Masahiro Goshima, Shin-ichiro Mori, 1993 .

KEGG: From Genes to Biochemical Pathways

M. Kanehisa, 2002 .

iPath: interactive exploration of biochemical pathways and networks.

P. Bork, M. Kanehisa, Takuji Yamada, 2008, Trends in biochemical sciences.

The KEGG databases and tools facilitating omics analysis: latest developments involving human diseases and pharmaceuticals.

M. Kanehisa, S. Goto, Masaaki Kotera, 2012, Methods in molecular biology.

Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones

Kanako O. Koyanagi, Michael A. Thomas, Sandro J. de Souza, 2004, PLoS Biology.

TOWARDS COORDINATED INTERNATIONAL SUPPORT OF CORE DATA RESOURCES FOR THE LIFE SCIENCES

S. Miyano, T. Gojobori, N. Perrimon, 2017, bioRxiv.

The detection and classification of membrane-spanning proteins.

C DeLisi, M Kanehisa, M. Kanehisa, 1985, Biochimica et biophysica acta.

Using the KEGG Database Resource

M. Kanehisa, Kiyoko Aoki, 2005, Current protocols in bioinformatics.

Systems biology approaches and pathway tools for investigating cardiovascular disease.

Susumu Goto, Minoru Kanehisa, Shuichi Kawashima, 2009, Molecular bioSystems.

Revealing phenotype-associated functional differences by genome-wide scan of ancient haplotype blocks

M. Kanehisa, S. Goto, T. Shibuya, 2017, PloS one.

Global Analysis of Circadian Expression in the Cyanobacterium Synechocystis sp. Strain PCC 6803

Minoru Kanehisa, M. Kanehisa, M. Ishiura, 2005, Journal of bacteriology.

KAAS: an automatic genome annotation and pathway reconstruction server

Akiyasu C. Yoshizawa, M. Kanehisa, Shujiro Okuda, 2007, Environmental health perspectives.

Symbol Nomenclature for Graphical Representations of Glycans.

Evan Bolton, Kiyoko F. Aoki-Kinoshita, Minoru Kanehisa, 2015, Glycobiology.

Whole genome sequencing of meticillin-resistant Staphylococcus aureus

M. Kanehisa, M. Hattori, S. Kuhara, 2001, The Lancet.

Evolutionary history and functional implications of protein domains and their combinations in eukaryotes

M. Kanehisa, S. Goto, K. Kuma, 2007, Genome Biology.

Discovery and Classification of Peptide Family G-Protein Coupled Receptors in the Human Genome Sequence

M. Kanehisa, Toshiaki Katayama, M. E. Levchenko, 2001 .

Computation with the KEGG pathway database.

M. Kanehisa, H. Ogata, W. Fujibuchi, 1998, Bio Systems.

Computational assignment of the EC numbers for genomic-scale analysis of enzymatic reactions.

M. Kanehisa, S. Goto, Y. Okuno, 2004, Journal of the American Chemical Society.

Post-Genome Informatics

M. Kanehisa, 2000 .

Reconstruction of amino acid biosynthesis pathways from the complete genome sequence.

M. Kanehisa, H. Bono, H. Ogata, 1998, Genome research.

DBGET/LinkDB: an integrated database retrieval system.

M. Kanehisa, W. Fujibuchi, S. Goto, 1998, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.

Integer programming-based method for completing signaling pathways and its application to analysis of colorectal cancer.

M. Kanehisa, T. Akutsu, Yoshihiro Yamanishi, 2010, Genome informatics. International Conference on Genome Informatics.

Construction and analysis of a profile library characterizing groups of structurally known proteins

M. Kanehisa, T. Takagi, A. Ogiwara, 1996, Protein science : a publication of the Protein Society.

Prediction of nitrogen metabolism‐related genes in Anabaena by kernel‐based network analysis

M. Kanehisa, Yoshihiro Yamanishi, S. Kawashima, 2007, Proteomics.

Automatic detection of conserved gene clusters in multiple genomes by graph comparison and P-quasi grouping.

M. Kanehisa, H. Matsuda, H. Ogata, 2000, Nucleic acids research.

Evaluation method for the potential functionome harbored in the genome and metagenome

M. Kanehisa, S. Goto, Takeaki Taniguchi, 2012, BMC Genomics.

A database for post-genome analysis.

M. Kanehisa, 1997, Trends in genetics : TIG.

Enzyme Annotation and Metabolic Reconstruction Using KEGG.

M. Kanehisa, 2017, Methods in molecular biology.

Bioinformatics in the post-sequence era

P. Bork, M. Kanehisa, 2003, Nature Genetics.

Prediction of missing enzyme genes in a bacterial metabolic network

M. Kanehisa, Yoshihiro Yamanishi, S. Goto, 2007, The FEBS journal.

Predictive genomic and metabolomic analysis for the standardization of enzyme data

M. Kanehisa, S. Goto, Masaaki Kotera, 2014 .

Fragment peptide library for classification and functional prediction of proteins

M. Kanehisa, Y. Seto, Yoshinori Ikeuchi, 1990, Proteins.

Chemical Continuity of Reaction Centers Along Successive Metabolic Reactions

M. Kanehisa, S. Goto, M. Hattori, 2009 .

E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs

Yoshihiro Yamanishi, Susumu Goto, Masaaki Kotera, 2009, Bioinform..

KEGG and GenomeNet Resources for Predicting Protein Function from Omics Data Including KEGG PLANT Resource

Susumu Goto, Masaaki Kotera, Minoru Kanehisa, 2011 .

Large-scale cDNA analysis of the maternal genetic information in the egg of Halocynthia roretzi for a gene expression catalog of ascidian development.

M Kanehisa, T Nakamura, M. Kanehisa, 2001, Development.

Construction of a dictionary of sequence motifs that characterize groups of related proteins

M Kanehisa, I Uchiyama, M. Kanehisa, 1992, Protein engineering.

Extraction of phylogenetic network modules from prokayrote metabolic pathways.

Susumu Goto, Minoru Kanehisa, Takuji Yamada, 2004, Genome informatics. International Conference on Genome Informatics.

Analysis of Binary Relations and Hierarchies of Enzymes in the Metabolic Pathways

Susumu Goto, Minoru Kanehisa, Hidemasa Bono, 1996 .

CYORF: Community Annotation of Cyanobacteria Genes

M. Kanehisa, M. Ikeuchi, Miho Furumichi, 2002 .

Domain shuffling and the evolution of vertebrates.

Minoru Kanehisa, Takeshi Kawashima, Shuichi Kawashima, 2009, Genome research.

Flexible construction of hierarchical scale-free networks with general exponent.

M. Kanehisa, T. Akutsu, N. Ueda, 2004, Physical review. E, Statistical, nonlinear, and soft matter physics.

Tandem clusters of membrane proteins in complete genome sequences.

M Kanehisa, D Kihara, M. Kanehisa, 2000, Genome research.

Correction: Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones

Kanako O. Koyanagi, Michael A. Thomas, Gopal R. Gopinath, 2004, PLoS biology.

Cluster model of lipid phase transitions with application to passive permeation of molecules and structure relaxations in lipid bilayers

M. Kanehisa, T. Tsong, 1978 .

Application of a new probabilistic model for recognizing complex patterns in glycans

Tatsuya Akutsu, Kiyoko F. Aoki-Kinoshita, Atsuko Yamaguchi, 2004, ISMB/ECCB.

REVIEW KEGG as a glycome informatics resource

Kiyoko F. Aoki-Kinoshita, M. Kanehisa, N. Ueda, 2006 .

KEGG as a glycome informatics resource.

Kiyoko F. Aoki-Kinoshita, Susumu Goto, Minoru Kanehisa, 2006, Glycobiology.

Prediction of membrane proteins based on classification of transmembrane segments.

M Kanehisa, D Kihara, M. Kanehisa, 1998, Protein engineering.

Predicting B cell epitope residues with network topology based amino acid indices.

M. Kanehisa, Jian Huang, Wataru Honda, 2007, Genome informatics. International Conference on Genome Informatics.

The role of log-normal dynamics in the evolution of biochemical pathways.

M. Kanehisa, T. Akutsu, J. Nacher, 2006, Bio Systems.

Prediction of Protein-Protein Interactions from Phylogenetic Trees Using Partial Correlation Coefficient

M. Kanehisa, Yoshihiro Yamanishi, H. Toh, 2003 .

KEGG Mapper for inferring cellular functions from protein sequences

Yoko Sato, Minoru Kanehisa, M. Kanehisa, 2019, Protein science : a publication of the Protein Society.

Relaxation phenomena in aqueous dispersions of synthetic lecithins.

M. Kanehisa, T. Tsong, 1977, Biochemistry.

Structure of the human interleukin-2 receptor gene.

M. Kanehisa, W. Leonard, W. Greene, 1985, Science.

The repertoire of desaturases for unsaturated fatty acid synthesis in 397 genomes.

Akiyasu C. Yoshizawa, M. Kanehisa, Takuji Yamada, 2006, Genome informatics. International Conference on Genome Informatics.

Conservation of gene co-regulation between two prokaryotes: Bacillus subtilis and Escherichia coli.

M. Kanehisa, Shujiro Okuda, S. Goto, 2005, Genome informatics. International Conference on Genome Informatics.

Screening for the target gene of cyanobacterial cAMP receptor protein SYCRP1

Minoru Kanehisa, Shuichi Yanagisawa, Hidehisa Yoshimura, 2002, Molecular microbiology.

Prediction of gene expression specificity by promoter sequence patterns.

M. Kanehisa, W. Fujibuchi, 1997, DNA research : an international journal for rapid publication of reports on genes and genomes.

Extraction of species-specific glycan substructures.

Yoshihiro Yamanishi, Minoru Kanehisa, Kosuke Hashimoto, 2004, Genome informatics. International Conference on Genome Informatics.

KEGG GLYCAN for Integrated Analysis of Pathways, Genes, and Structures

M. Kanehisa, K. Hashimoto, 2008 .

Identification of Ortholog Groups in KEGG/SSDB by Considering Domain Structures

M. Kanehisa, M. Itoh, A. Nakaya, 2002 .

Pattern recognition in nucleic acid sequences. I. A general method for finding local homologies and symmetries

M. Kanehisa, W. Goad, 1982, Nucleic Acids Res..

An improved scoring scheme for predicting glycan structures from gene expression data.

M. Kanehisa, Yoshihiro Yamanishi, S. Goto, 2007, Genome informatics. International Conference on Genome Informatics.

Comparative Genome Analysis of Three Eukaryotic Parasites with Differing Abilities To Transform Leukocytes Reveals Key Mediators of Theileria-Induced Leukocyte Transformation

M. Kanehisa, M. Hattori, T. Abe, 2012, mBio.

A global representation of the carbohydrate structures: a tool for the analysis of glycan.

Kiyoko F. Aoki-Kinoshita, Susumu Goto, Minoru Kanehisa, 2005, Genome informatics. International Conference on Genome Informatics.

Using KEGG in the Transition from Genomics to Chemical Genomics

Kiyoko F. Aoki-Kinoshita, M. Kanehisa, 2009 .

Prediction of Nuclear Localization Signals by HMM

M. Kanehisa, Keun-Joon Park, 1999 .

Extraction of leukemia specific glycan motifs in humans by computational glycomics.

Yoshihiro Yamanishi, Susumu Goto, Minoru Kanehisa, 2005, Carbohydrate research.

varDB: a database of antigenic variant sequences--current status and future prospects.

M. Kanehisa, S. Goto, M. Wahlgren, 2010, Acta tropica.

arDB : A database of antigenic variant sequences — Current status nd future prospects

M. Kanehisa, S. Goto, C. Wheelock, 2009 .

Glycan Linkage Substitution Matrix Rooted on Tree Alignments

M. Kanehisa, Hiroshi Mamitsuka, Kiyoko Aoki, 2004 .

Positive Regulation of Sugar Catabolic Pathways in the Cyanobacterium Synechocystis sp. PCC 6803 by the Group 2 σ Factor SigE*

M. Kanehisa, Y. Kanesaki, M. Asayama, 2005, Journal of Biological Chemistry.

Comparative pair-wise domain-combinations for screening the clade specific domain-architectures in metazoan genomes.

Nicholas H. Putnam, M. Kanehisa, D. Rokhsar, 2007, Genome informatics. International Conference on Genome Informatics.

Identification of Novel Types of Prokaryotic Retroelements Based on Gene Neighborhood and Protein Architecture

M. Kanehisa, K. Kojima, 2006 .

Structure-activity relationships and pathway analysis of biological degradation processes

M. Kanehisa, S. Goto, M. Hattori, 2006 .

MAGEST: ESTs and Gene Expression Pattern Database for Halocynthia roretzi Maternal cDNA

M. Kanehisa, S. Kawashima, H. Nishida, 1999 .

Systems Approach to Metabolism

Kiyoko F. Aoki-Kinoshita, M. Kanehisa, 2008 .

Characteristic Chemical Transformation Patterns in Biodegradation Pathways

M. Kanehisa, S. Goto, M. Hattori, 2005 .

Detection of Co-regulated Genes by Comparative Analysis of Microbial Genomes

M. Kanehisa, H. Ogata, W. Fujibuchi, 1998 .

Protein Sequence-Structure Alignment Using 3 D-HMM

M. Kanehisa, H. Toh, M. Fujita, 2004 .

A Two-Component Mn2+-Sensing System Negatively Regulates Expression of the mntCAB Operon in Synechocystis

M. Kanehisa, I. Suzuki, D. Los, 2002, The Plant Cell Online.

Searching for Common Protein Networks in Neurodegenerative Disorders

M. Kanehisa, S. Goto, K. Ueda, 2002 .

Two complementary representations of a scale-free network

M. Kanehisa, T. Akutsu, S. Goto, 2004, physics/0402072.

EGENES: Transcriptome-based plant metabolic pathway database in KEGG

M. Kanehisa, S. Goto, Kawashima, 2007 .

Distribution profiles of GC content around the translation initiation site in different species

M. Kanehisa, M. Mizuno, Minoru Kanehisa, 1994, FEBS letters.

Extracting Common Substructures of GPCR Ligands

M. Kanehisa, S. Goto, M. Hattori, 2009 .

Flexible construction of hierarchical scale-free networks with general exponent.

M. Kanehisa, T. Akutsu, N. Ueda, 2004, Physical review. E, Statistical, nonlinear, and soft matter physics.

Construction of a Functional Word Dictionary for Primate Promoter Sequences

Minoru Kanehisa, Wataru Fujibuchi, M. Kanehisa, 1993 .

Prediction of Promoter Expression Specificity by Conserved Sequence Patterns

M. Kanehisa, W. Fujibuchi, 1995 .

The size differences among mammalian introns are due to the accumulation of small deletions

Minoru Kanehisa, Hiroyuki Ogata, Wataru Fujibuchi, 1996, FEBS letters.

Autoimmune Diseases and Evolutionary Trace of the T-Cell Epitopes

M. Kanehisa, S. Kawashima, Wataru Honda, 2006 .

The Construction of the Knowledge Base on Apoptotic Molecular Interactions

Minoru Kanehisa, Masahiro Hattori, M. Kanehisa, 1997 .

A WWW Tool for Organizing Knowledge of Biomolecular Reaction Pathways

M. Kanehisa, N. Tsukamoto, 1995 .

HMM Search for Apoptotic Domains (MOLECULAR BIOLOGY AND INFORMATION-Biological Information Science)

Minoru Kanehisa, Masahiro Hattori, M. Kanehisa, 2000 .

Tools for investigating mechanisms of antigenic variation: new extensions to varDB.

Susumu Goto, Minoru Kanehisa, C Nelson Hayes, 2009, Genome informatics. International Conference on Genome Informatics.

The ﬁrst genome-scale reconstruction of Corynebacterium simulans

M. Kanehisa, Miho Furumichi, Yoko Sato, 2021 .

Developing Molecular Interaction Database and Searching for Similar Pathways (MOLECULAR BIOLOGY AND INFORMATION-Biological Information Science)

Minoru Kanehisa, Shuichi Kawashima, Toshiaki Katayama, 1998 .

Design of KEGG and GO

M. Kanehisa, 2005 .

Construction of Ortholog/Paralog Group Table for PTS

M. Kanehisa, Takeaki Taniguchi, 1998 .

Constructing and Annotating GENES Database in KEGG

M. Kanehisa, H. Bono, H. Ogata, 1998 .

Genome Scale Prediction of Two-Component Signal Transducers from the Knowledgeof Regulatory Interactions

M. Kanehisa, H. Bono, H. Ogata, 1997 .

GLYCAN: The Database of Carbohydrate Structures

Susumu Goto, Minoru Kanehisa, Kosuke Hashimoto, 2003 .

KEGG PEPTIDE : A Database for Peptide Structures

M. Kanehisa, Toshiaki Katayama, M. Araki, 2004 .

Prediction of Glycan Structures from Glycosyltransferase Expression Profiles

M. Kanehisa, S. Goto, H. Takematsu, 2003 .

KEGG for linking genomes to life and the environment

Yoshihiro Yamanishi, Susumu Goto, Minoru Kanehisa, 2007, Nucleic Acids Res..

KEGG for integration and interpretation of large-scale molecular data sets

Susumu Goto, Minoru Kanehisa, Miho Furumichi, 2011, Nucleic Acids Res..

KEGG for representation and analysis of molecular networks involving diseases and drugs

Susumu Goto, Minoru Kanehisa, Miho Furumichi, 2009, Nucleic Acids Res..

KEGG: Kyoto Encyclopedia of Genes and Genomes

Hiroyuki Ogata, Susumu Goto, Minoru Kanehisa, 1999, Nucleic Acids Res..

Quantitative elementary mode analysis of metabolic pathways: the example of yeast glycolysis

Minoru Kanehisa, Jean-Marc Schwartz, M. Kanehisa, 2006, BMC Bioinformatics.

A quadratic programming approach for decomposing steady-state metabolic flux distributions onto elementary modes

Minoru Kanehisa, Jean-Marc Schwartz, M. Kanehisa, 2005, ECCB/JBI.

A 6-Approximation Algorithm for Computing Smallest Common AoN-Supertree with Application to the Reconstruction of Glycan Trees

Ming-Yang Kao, Xiang-Yang Li, Kiyoko F. Aoki-Kinoshita, 2006, ISAAC.

Anesthetic action of membrane lipids.

M. Kanehisa, T. Tsong, M. Greenberg, 1977, Biochemistry.

KEGG: integrating viruses and cellular organisms

Minoru Kanehisa, Miho Furumichi, Mao Tanabe, 2020, Nucleic Acids Res..

Toward understanding the origin and evolution of cellular organisms

Minoru Kanehisa, M. Kanehisa, 2019, Protein science : a publication of the Protein Society.

Use of statistical criteria for screening potential homologies in nucleic acid sequences

Minoru Kanehisa, M. Kanehisa, 1984, Nucleic Acids Res..

AAindex: amino acid index database, progress report 2008

Minoru Kanehisa, Shuichi Kawashima, Andrzej Kolinski, 2007, Nucleic Acids Res..

KEGG: Kyoto Encyclopedia of Genes and Genomes

Susumu Goto, Minoru Kanehisa, M. Kanehisa, 2000, Nucleic Acids Res..

Supervised enzyme network inference from the integration of genomic data and chemical information

Yoshihiro Yamanishi, Jean-Philippe Vert, Minoru Kanehisa, 2005, ISMB.

Extraction of correlated gene clusters from multiple genomic data by generalized kernel canonical correlation analysis

Yoshihiro Yamanishi, Jean-Philippe Vert, Minoru Kanehisa, 2003, ISMB.

KEGG for taxonomy-based analysis of pathways and genomes

M. Kanehisa, Miho Furumichi, Yoko Sato, 2022, Nucleic Acids Res..

KEGG Bioinformatics Resource for Plant Genomics and Metabolomics.

Minoru Kanehisa, M. Kanehisa, 2016, Methods in molecular biology.

Data, information, knowledge and principle: back to metabolism in KEGG

Susumu Goto, Minoru Kanehisa, Miho Furumichi, 2013, Nucleic Acids Res..

KEGG Atlas mapping for global analysis of metabolic pathways

Peer Bork, Susumu Goto, Minoru Kanehisa, 2008, Nucleic Acids Res..

From genomics to chemical genomics: new developments in KEGG

Kiyoko F. Aoki-Kinoshita, Susumu Goto, Minoru Kanehisa, 2005, Nucleic Acids Res..

New approach for understanding genome variations in KEGG

Minoru Kanehisa, Miho Furumichi, Mao Tanabe, 2018, Nucleic Acids Res..

Automated interpretation of metabolic capacity from genome and metagenome sequences

Minoru Kanehisa, M. Kanehisa, 2013, Quantitative Biology.

The KEGG resource for deciphering the genome

Susumu Goto, Minoru Kanehisa, Masahiro Hattori, 2004, Nucleic Acids Res..

Structural changes and fluctuations of proteins. II. Analysis of the denaturation of globular proteins.

M. Kanehisa, A. Ikegami, 1977, Biophysical chemistry.

iPath2.0: interactive pathway explorer

Peer Bork, Minoru Kanehisa, Shujiro Okuda, 2011, Nucleic Acids Res..

Extraction of organism groups from phylogenetic profiles using independent component analysis.

Yoshihiro Yamanishi, Minoru Kanehisa, Masumi Itoh, 2002, Genome informatics. International Conference on Genome Informatics.

KEGG as a reference resource for gene and protein annotation

Minoru Kanehisa, Miho Furumichi, Mao Tanabe, 2015, Nucleic Acids Res..

KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold

Hiroyuki Ogata, Susumu Goto, Minoru Kanehisa, 2019, bioRxiv.

Toward Pathway Engineering: A New Database of Genetic and Molecular Pathways

Minoru Kanehisa, M. Kanehisa, 1997 .

Identification of a new cryptochrome class. Structure, function, and evolution.

Minoru Kanehisa, John A Tainer, Victoria A Roberts, 2003, Molecular cell.

KEGG mapping tools for uncovering hidden features in biological data

M. Kanehisa, Yoko Sato, Masayuki Kawashima, 2021, Protein science : a publication of the Protein Society.

Alteration of Gene Expression in Human Hepatocellular Carcinoma with Integrated Hepatitis B Virus DNA

M. Kanehisa, Yoshihiro Yamanishi, A. Tamori, 2005, Clinical Cancer Research.

The KEGG database.

Minoru Kanehisa, M. Kanehisa, 2002, Novartis Foundation symposium.

A Prediction Method for Transmembrane Segments in Proteins Utilizing Multiple Discrimination Functions

M. Kanehisa, D. Kihara, Toshio Shimizu, 1996 .

Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach

Susumu Goto, Minoru Kanehisa, Masashi Fujita, 2007, BMC Bioinformatics.

GENIES: gene network inference engine based on supervised analysis

Yoshihiro Yamanishi, Susumu Goto, Masaaki Kotera, 2012, Nucleic Acids Res..

Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs

Minoru Kanehisa, Keun-Joon Park, M. Kanehisa, 2003, Bioinform..

Prediction of in-vivo modification sites of proteins from their primary structures.

M. Kanehisa, K. Nakai, 1988, Journal of biochemistry.

PathPred: an enzyme-catalyzed metabolic pathway prediction server

Susumu Goto, Masaaki Kotera, Yuki Moriya, 2010, Nucleic Acids Res..

Characterization and evolutionary landscape of AmnSINE1 in Amniota genomes.

M. Kanehisa, M. Hirakawa, N. Okada, 2009, Gene.

The evolutionary repertoires of the eukaryotic-type ABC transporters in terms of the phylogeny of ATP-binding domains in eukaryotes and prokaryotes.

M. Kanehisa, Hiroshi Mamitsuka, K. Kuma, 2004, Molecular biology and evolution.

EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments

Masanori Suzuki, Ali Masoudi-Nejad, Susumu Goto, 2006, Nucleic Acids Res..

Systematic survey for novel types of prokaryotic retroelements based on gene neighborhood and protein architecture.

M. Kanehisa, K. Kojima, 2008, Molecular biology and evolution.

EGENES: Transcriptome-Based Plant Database of Genes with Metabolic Pathway Information and Expressed Sequence Tag Indices in KEGG1[C][W][OA]

Ali Masoudi-Nejad, Susumu Goto, Yuki Moriya, 2007, Plant Physiology.

AAindex: Amino Acid index database

Minoru Kanehisa, Shuichi Kawashima, M. Kanehisa, 2000, Nucleic Acids Res..

Distribution of Base Composition around the Splice Sites in Different Species

M. Kanehisa, M. Mizuno, 1994 .

The KEGG databases at GenomeNet

Susumu Goto, Minoru Kanehisa, Shuichi Kawashima, 2002, Nucleic Acids Res..

Comprehensive analysis of distinctive polyketide and nonribosomal peptide structural motifs encoded in microbial genomes.

Minoru Kanehisa, Michihiro Araki, M. Kanehisa, 2007, Journal of molecular biology.

Clustering of database sequences for fast homology search using upper bounds on alignment score.

Tatsuya Akutsu, Minoru Kanehisa, Masumi Itoh, 2004, Genome informatics. International Conference on Genome Informatics.

AAindex: A Database of Amino Acid Indices and Mutation Matrices

Minoru Kanehisa, Kentaro Tomii, M. Kanehisa, 1995 .

VisANT 3.0: new modules for pathway visualization, editing, prediction and construction

Zhenjun Hu, Charles DeLisi, Minoru Kanehisa, 2007, Nucleic Acids Res..

A score matrix to reveal the hidden links in glycans

Tatsuya Akutsu, Kiyoko F. Aoki-Kinoshita, Hiroshi Mamitsuka, 2005, Bioinform..

Utilizing Evolutionary Information and Gene Expression Data for Estimating Gene Networks with Bayesian Network Models

Satoru Miyano, Hideo Bannai, Seiya Imoto, 2005, J. Bioinform. Comput. Biol..

Detection of Membrane Proteins in the Whole Genome Sequences

M. Kanehisa, D. Kihara, 1997 .

Cold‐regulated genes under control of the cold sensor Hik33 in Synechocystis

M. Kanehisa, Y. Kanesaki, I. Suzuki, 2001, Molecular microbiology.

Towards zoomable multidimensional maps of the cell

Zhenjun Hu, Charles DeLisi, Minoru Kanehisa, 2007, Nature Biotechnology.

Characterization and classification of adverse drug interactions.

Susumu Goto, Masaaki Kotera, Minoru Kanehisa, 2010, Genome informatics. International Conference on Genome Informatics.

Comprehensive analysis of glycosyltransferases in eukaryotic genomes for structural and functional characterization of glycans.

Susumu Goto, Minoru Kanehisa, Shujiro Okuda, 2009, Carbohydrate research.

Pathways of Toxicity.

Thomas Hartung, Roded Sharan, Melvin E Andersen, 2014, ALTEX.

Extraction of phylogenetic network modules from the metabolic network

Susumu Goto, Minoru Kanehisa, Takuji Yamada, 2006, BMC Bioinformatics.

Prediction of drug–target interaction networks from the integration of chemical and genomic spaces

Yoshihiro Yamanishi, Minoru Kanehisa, Michihiro Araki, 2008, ISMB.

LIGAND: database of chemical compounds and reactions in biological pathways

Susumu Goto, Masahiro Hattori, Takaaki Nishioka, 2002, Nucleic Acids Res..

Comprehensive genomic analysis of sulfur-relay pathway genes.

M. Kanehisa, S. Goto, M. Hattori, 2010, Genome informatics. International Conference on Genome Informatics.

The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships

Yoshihiro Yamanishi, Tetsuya Sato, Minoru Kanehisa, 2005, Bioinform..

The commonality of protein interaction networks determined in neurodegenerative disorders (NDDs)

Susumu Goto, Minoru Kanehisa, Kunihiro Ueda, 2007, Bioinform..

Identification of Enzyme Genes Using Chemical Structure Alignments of Substrate-Product Pairs

Susumu Goto, Yuki Moriya, Shujiro Okuda, 2016, J. Chem. Inf. Model..

KAAS: an automatic genome annotation and pathway reconstruction server

Yuki Moriya, Minoru Kanehisa, Shujiro Okuda, 2007, Nucleic Acids Res..

Metabolite antigens and pathway incompatibility.

M. Kanehisa, S. Kawashima, Wataru Honda, 2006, Genome informatics. International Conference on Genome Informatics.

SSDB: Sequence Similarity Database in KEGG

M. Kanehisa, S. Goto, Yoko Sato, 2001 .

Pathway databases and higher order function.

M Kanehisa, M. Kanehisa, 2000, Advances in protein chemistry.

Autoimmune diseases and peptide variations.

M. Kanehisa, S. Kawashima, Wataru Honda, 2005, Genome informatics. International Conference on Genome Informatics.

MRP1 mutated in the L0 region transports SN-38 but not leukotriene C4 or estradiol-17 (beta-D-glucuronate).

M. Kanehisa, S. Goto, K. Tsujikawa, 2005, Biochemical pharmacology.

DINIES: drug–target interaction network inference engine based on supervised analysis

Yoshihiro Yamanishi, Susumu Goto, Masaaki Kotera, 2014, Nucleic Acids Res..

Organizing and computing metabolic pathway data in terms of binary relations.

M Kanehisa, S Goto, H Bono, 1997, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.

Molecular network analysis of diseases and drugs in KEGG.

Minoru Kanehisa, M. Kanehisa, 2013, Methods in molecular biology.

Population Model-Based Inter-Diplotype Similarity Measure for Accurate Diplotype Clustering

Tetsuo Shibuya, Ryo Yamada, Minoru Kanehisa, 2012, J. Comput. Biol..

Bioinformatics approaches in glycomics and drug discovery.

Kiyoko F. Aoki-Kinoshita, Minoru Kanehisa, Kiyoko F Aoki-Kinoshita, 2006, Current opinion in molecular therapeutics.

Protein network inference from multiple genomic data: a supervised approach

Yoshihiro Yamanishi, Jean-Philippe Vert, Minoru Kanehisa, 2004, ISMB/ECCB.

Comprehensive Analysis of Delay in Transcriptional Regulation Using Expression Profiles

Yoshihiro Yamanishi, Susumu Goto, Minoru Kanehisa, 2003 .

MIMOX: a web tool for phage display based epitope mapping

Minoru Kanehisa, Alex Gutteridge, Jian Huang, 2006, BMC Bioinformatics.

Assessing the significance of local sequence homologies

M. Kanehisa, C. DeLisi, 1984 .

KEGG API: A Web Service Using SOAP/WSDL to Access the KEGG System

Minoru Kanehisa, Shuichi Kawashima, Toshiaki Katayama, 2003 .

Gene annotation and pathway mapping in KEGG.

Kiyoko F. Aoki-Kinoshita, Minoru Kanehisa, Kiyoko F Aoki-Kinoshita, 2007, Methods in molecular biology.

The GenBank nucleic acid sequence database

Minoru Kanehisa, James W. Fickett, Christian Burks, 1985, Comput. Appl. Biosci..

Comparative analysis of DNA-binding proteins between thermophilic and mesophilic bacteria.

M. Kanehisa, M. Fujita, 2005, Genome informatics. International Conference on Genome Informatics.

Los Alamos sequence analysis package for nucleic acids and proteins

M. I. Kanehisa, M. Kanehisa, 1982, Nucleic Acids Res..

A comparative analysis of ABC transporters in complete microbial genomes.

M Kanehisa, M. Kanehisa, K. Tomii, 1998, Genome research.

Analysis of the differences in metabolic network expansion between prokaryotes and eukaryotes.

M. Kanehisa, Takuji Yamada, Shujiro Okuda, 2006, Genome informatics. International Conference on Genome Informatics.

Response to oxidative stress involves a novel peroxiredoxin gene in the unicellular cyanobacterium Synechocystis sp. PCC 6803.

M. Kanehisa, M. Ikeuchi, H. Pakrasi, 2004, Plant & cell physiology.

DNA Microarray Analysis of Redox-Responsive Genes in the Genome of the Cyanobacterium Synechocystis sp. Strain PCC 6803

Minoru Kanehisa, Masahiko Ikeuchi, Y. Hihara, 2003, Journal of bacteriology.

Los Alamos Sequence Library: a database and analysis system for nucleic acid sequences

Minoru Kanehisa, James W. Fickett, Walter B. Goad, 1982 .

Modular Architecture of Metabolic Pathways Revealed by Conserved Sequences of Reactions

Susumu Goto, Masaaki Kotera, Minoru Kanehisa, 2013, J. Chem. Inf. Model..

Network-Based Analysis and Characterization of Adverse Drug-Drug Interactions

Susumu Goto, Masaaki Kotera, Minoru Kanehisa, 2011, J. Chem. Inf. Model..

KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains

Tatsuya Akutsu, Kiyoko F. Aoki-Kinoshita, Atsuko Yamaguchi, 2004, Nucleic Acids Res..

Efficient tree-matching methods for accurate carbohydrate database queries.

Tatsuya Akutsu, Atsuko Yamaguchi, Minoru Kanehisa, 2003, Genome informatics. International Conference on Genome Informatics.

Expanding Large Scale Signal Transduction Networks

R. Heinrich, M. Kanehisa, K. Hashimoto, 2005 .

Cluster analysis of genome-wide expression profiles to predict gene functions with KEGG

M. Kanehisa, H. Bono, M. Nakao, 1999, Nature Genetics.

Updates to the Symbol Nomenclature For Glycans (SNFG) Guidelines.

Evan Bolton, Kiyoko F. Aoki-Kinoshita, Martin Frank, 2019, Glycobiology.

Extracting Sequence Motifs and the Phylogenetic Features of SNARE‐Dependent Membrane Traffic

Yuki Moriya, Minoru Kanehisa, Shujiro Okuda, 2006, Traffic.

Mining Patterns from Glycan Structures

Minoru Kanehisa, Ichigaku Takigawa, Hiroshi Mamitsuka, 2010 .

Mining significant tree patterns in carbohydrate sugar chains

Minoru Kanehisa, Ichigaku Takigawa, Hiroshi Mamitsuka, 2008, ECCB.

BIOINFORMATICS Mining signiﬁcant tree patterns in carbohydrate sugar chains

M. Kanehisa, Hiroshi Mamitsuka, Ichigaku Takigawa, 2008 .

Analysis of a lipid biosynthesis protein family and phospholipid structural variations.

M. Kanehisa, S. Goto, Yuki Moriya, 2010, Genome informatics. International Conference on Genome Informatics.

The predicted structure of the Ia beta 1 domain. A hypothesis for the structural basis of major histocompatibility complex-restricted T-cell recognition of antigens.

M. Kanehisa, M. Norcross, 2006, Scandinavian journal of immunology.

Representation and analysis of molecular networks involving diseases and drugs.

Minoru Kanehisa, M. Kanehisa, 2009, Genome informatics. International Conference on Genome Informatics.

Knowledge-Based Analysis of Protein Interaction Networks in Neurodegenerative Diseases

M. Kanehisa, M. Tanabe, Vachiranee Limviphuvadh, 2010 .

KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data

Hideyuki Suzuki, Kazuki Saito, Yoshiyuki Ogata, 2010, Nucleic Acids Res..

Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli

Susumu Goto, Minoru Kanehisa, Shujiro Okuda, 2007, BMC Genomics.

Complete nucleotide sequence of the freshwater unicellular cyanobacterium Synechococcus elongatus PCC 6301 chromosome: gene content and organization

M. Kanehisa, Miho Furumichi, M. Sugiura, 2007, Photosynthesis Research.

Pattern recognition in nucleic acid sequences. II. An efficient method for finding locally stable secondary structures

Minoru I. Kanehisa, Walter B. Goad, M. Kanehisa, 1982, Nucleic Acids Res..

Slow equilibration of a denatured protein: comparison of the cluster model with the proline isomerization model.

M. Kanehisa, T. Tsong, 1979, Journal of molecular biology.

Mechanism of the multiphasic kinetics in the folding and unfolding of globular proteins.

M. Kanehisa, T. Tsong, 1978, Journal of molecular biology.

New amino acid indices based on residue network topology.

Minoru Kanehisa, Shuichi Kawashima, M. Kanehisa, 2007, Genome informatics. International Conference on Genome Informatics.

KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters

Yoshihiro Yamanishi, Susumu Goto, Yuki Moriya, 2012, Nucleic Acids Res..

ODB: a database of operons accumulating known operons across multiple genomes

Susumu Goto, Minoru Kanehisa, Shujiro Okuda, 2005, Nucleic Acids Res..

Fluctuation of an -helix structure. Difference between the central and terminal portions.

M. Kanehisa, M. Nakanishi, A. Ikegami, 1972, Journal of molecular biology.

Pathway Analysis

M. Kanehisa, P. D’Eustachio, H. Hermjakob, 2020, Definitions.

Characterizing common substructures of ligands for GPCR protein subfamilies.

Susumu Goto, Minoru Kanehisa, Masahiro Hattori, 2010, Genome informatics. International Conference on Genome Informatics.

A genetic algorithm based molecular modeling technique for RNA stem-loop structures.

M Kanehisa, H Ogata, M. Kanehisa, 1995, Nucleic acids research.

LIGAND: chemical database of enzyme reactions

Susumu Goto, Minoru Kanehisa, Takaaki Nishioka, 2000, Nucleic Acids Res..

Using protein motif combinations to update KEGG pathway maps and orthologue tables.

Minoru Kanehisa, Frédérique Lisacek, Bastien Rance, 2004, Genome informatics. International Conference on Genome Informatics.

A relational database system for the maintenance and verification of the Los Alamos sequence library

Minoru Kanehisa, James W. Fickett, W. B. Goad, 1984, Nucleic Acids Res..

Predicting microbial biodegradation pathways

Donald J. Berndt, Minoru Kanehisa, Lawrence P. Wackett, 1999 .

Characterization of genes encoding multi-domain proteins in the genome of the filamentous nitrogen-fixing Cyanobacterium anabaena sp. strain PCC 7120.

A. Kamei, M. Kanehisa, M. Ikeuchi, 2001, DNA research : an international journal for rapid publication of reports on genes and genomes.

Inference of Protein-Protein Interactions by Using Co-evolutionary Information

Yoshihiro Yamanishi, Tetsuya Sato, Minoru Kanehisa, 2007, AB.

ProfilePSTMM: capturing tree-structure motifs in carbohydrate sugar chains

Kiyoko F. Aoki-Kinoshita, Hiroshi Mamitsuka, Nobuhisa Ueda, 2006, ISMB.

Prediction of glycan structures from gene expression data based on glycosyltransferase reactions

Susumu Goto, Minoru Kanehisa, Shin Kawano, 2005, Bioinform..

Kinetics of activation and desensitization in receptor proteins

M. Kanehisa, 1981, Biopolymers.

MAGEST: MAboya Gene Expression patterns and Sequence Tags

Minoru Kanehisa, Takeshi Kawashima, Shuichi Kawashima, 2000, Nucleic Acids Res..

Systematic Detection of Protein Structural Motifs

Minoru Kanehisa, Kentaro Tomii, M. Kanehisa, 1999, Pattern Discovery in Biomolecular Data.

Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions

Yoshihiro Yamanishi, Tetsuya Sato, Minoru Kanehisa, 2006, Bioinform..

Identification of metabolic units induced by environmental signals

Tatsuya Akutsu, Jose C. Nacher, Minoru Kanehisa, 2006, ISMB.

Prediction of Protein-Protein Interactions Based on Real-Valued Phylogenetic Profiles Using Partial Correlation Coefficient

Yoshihiro Yamanishi, Minoru Kanehisa, M. Kanehisa, 2004 .

Generalized reaction patterns for prediction of unknown enzymatic reactions.

Susumu Goto, Minoru Kanehisa, Masahiro Hattori, 2008, Genome informatics. International Conference on Genome Informatics.

Maternal Genetic Information Stored in Fertilized Eggs of the Ascidian, Halocynthia roretzi

M. Kanehisa, H. Kawamura, S. Kawashima, 2001 .

LIGAND: chemical database for enzyme reactions

Susumu Goto, Minoru Kanehisa, Takaaki Nishioka, 1998, Bioinform..

Data Mining for Systems Biology

Hiroshi Mamitsuka, Minoru Kanehisa, Charles DeLisi, 2012, Methods in Molecular Biology.

Data Mining for Systems Biology

Charles DeLisi, Minoru Kanehisa, Hiroshi Mamitsuka, 2013, Methods in Molecular Biology.

Regulation of metabolic networks by small molecule metabolites

Susumu Goto, Minoru Kanehisa, Alex Gutteridge, 2007, BMC Bioinformatics.

Clustering under the line graph transformation: application to reaction network

Tatsuya Akutsu, Jose C. Nacher, Minoru Kanehisa, 2004, BMC Bioinformatics.

varDB: a pathogen-specific sequence database of protein families involved in antigenic variation

Susumu Goto, Minoru Kanehisa, Nicolas Joannin, 2008, Bioinform..

KEGG API: A Web Service Using SOAP/WSDL to Access the KEGG System

M. Kanehisa, Toshiaki Katayama, S. Kawashima, 2003 .

An approach to systematic detection of protein structural motifs

Yo Matsuo, Minoru Kanehisa, Y. Matsuo, 1991, Comput. Appl. Biosci..

Computer analysis and structure prediction of nucleic acids and proteins

Charles DeLisi, Minoru Kanehisa, P. Klein, 1984, Nucleic Acids Res..

Local hydrophobicity stabilizes secondary structures in proteins

M. Kanehisa, T. Tsong, T Y Tsong, 1980, Biopolymers.

Extracting active pathways from gene expression data

Jean-Philippe Vert, Minoru Kanehisa, M. Kanehisa, 2003, ECCB.

An integrated database SPAD (Signaling PAthway Database) for signal transduction and genetic information

Satoru Kuhara, Minoru Kanehisa, Toshihisa Takagi, 1995 .

Nonrandom recurrence of consecutive repeats in noncoding mammalian sequences

R. Nussinov, M. Kanehisa, C. DeLisi, 1986 .

Identification of endocrine disruptor biodegradation by integration of structure-activity relationship with pathway analysis.

M. Kanehisa, Taku Kudo, Hiroshi Mamitsuka, 2007, Environmental science & technology.

Characterization of alpha-phosphoglucomutase isozymes from Toxoplasma gondii.

M. Kanehisa, S. Kawashima, T. Takeuchi, 2010, Parasitology international.

Pathways of Toxicity.

Yeyejide A. Adeleye, Scott M. Auerbach, M. Kanehisa, 2014, ALTEX.

KAAS: an automatic genome annotation and pathway reconstruction server

M. Kanehisa, Shujiro Okuda, M. Itoh, 2007, Nucleic Acids Res..

Complete Genome Sequence Reconstruction of Amino Acid Biosynthesis Pathways from the References

Susumu Goto, Minoru Kanehisa, Hidemasa Bono, 1998 .

Analysis of common substructures of metabolic compounds within the different organism groups.

Minoru Kanehisa, Masahiro Hattori, Ai Muto, 2007, Genome informatics. International Conference on Genome Informatics.

The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships

M. Kanehisa, Yoshihiro Yamanishi, H. Toh, 2005, Bioinform..

Dynamics of the cluster model of protein folding

M. Kanehisa, T. Tsong, 1979 .

KEGG: Kyoto Encyclopedia of Genes and Genomes

M. Kanehisa, S. Goto, 2000, Nucleic Acids Res..

Discriminant analysis of promoter regions in Escherichia coli sequences

Jacob V. Maizel, K. Nakata, M. Kanehisa, 1988, Comput. Appl. Biosci..

Identification of Enzyme Genes Using Chemical Structure Alignments of Substrate-Product Pairs

M. Kanehisa, Takuji Yamada, Shujiro Okuda, 2016, J. Chem. Inf. Model..

KEGG bioinformatics resource for plant genomics research.

Susumu Goto, Minoru Kanehisa, Ali Masoudi-Nejad, 2007, Methods in molecular biology.

Analysis of Tissue Specific Expression Patterns of Isozymes

M. Kanehisa, Takuji Yamada, Shujiro Okuda, 2006 .

Databases of biological information

M. Kanehisa, 1998 .

An assessment of neural network and statistical approaches for prediction of E. coli promoter sites.

M Kanehisa, M. Kanehisa, P B Horton, 1992, Nucleic acids research.

Multiple sequence alignment by parallel simulated annealing

M Ishikawa, T Toya, M Hoshida, 1993, Comput. Appl. Biosci..

Contributory presentations/posters

Diederichs, Bosco K. Ho, Hironori K. Nakamura, 1999, Journal of Biosciences.

Extraction and Analysis of Chemical Modification Patterns in Drug Development

Susumu Goto, Minoru Kanehisa, Shujiro Okuda, 2009, J. Chem. Inf. Model..

Systematic Analysis of Enzyme-Catalyzed Reaction Patterns and Prediction of Microbial Biodegradation Pathways

Susumu Goto, Minoru Kanehisa, Masahiro Hattori, 2007, J. Chem. Inf. Model..

Quantitative elementary mode analysis of metabolic pathways: the example of yeast glycolysis

M. Kanehisa, J. Schwartz, 2006, BMC Bioinformatics.

Detection of Apoptotic Domains Against KEGG Database by the HMM Search

Minoru Kanehisa, Masahiro Hattori, M. Kanehisa, 1999 .

LIGAND database for enzymes, compounds and reactions

Susumu Goto, Minoru Kanehisa, Takaaki Nishioka, 1999, Nucleic Acids Res..

Evaluation method for the potential functionome harbored in the genome and metagenome

M. Kanehisa, S. Goto, Takeaki Taniguchi, 2012, BMC Genomics.

varDB: a pathogen-specific sequence database of protein families involved in antigenic variation

M. Kanehisa, S. Goto, M. Wahlgren, 2008, Bioinform..