B. Futcher

发表

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization.

Michael Ruogu Zhang, D. Botstein, G. Sherlock, 1998, Molecular biology of the cell.

Two yeast forkhead genes regulate the cell cycle and pseudohyphal growth

D. Botstein, P. Brown, P. Spellman, 2000, Nature.

Stress resistance of yeast cells is largely independent of cell cycle phase

Bruce Futcher, B. Futcher, B. Elliott, 1993, Yeast.

Transcriptional regulatory networks and the yeast cell cycle.

B. Futcher, 2002, Current opinion in cell biology.

Growth Rate and Cell Size Modulate the Synthesis of, and Requirement for, G1-Phase Cyclins at Start

Bruce Futcher, Jian Zhang, B. Futcher, 2004, Molecular and Cellular Biology.

Metabolic cycle, cell cycle, and the finishing kick to Start

B. Futcher, 2006, Genome Biology.

Far1 and Fus3 Link the Mating Pheromone Signal Transduction Pathway to Three G1-Phase Cdc28 Kinase Complexes

B. Futcher, M. Tyers, M Tyers, 1993, Molecular and cellular biology.

The Cln3‐Cdc28 kinase complex of S. cerevisiae is regulated by proteolysis and phosphorylation.

B. Futcher, M. Tyers, G. Tokiwa, 1992, The EMBO journal.

The Cell Cycle–Regulated Genes of Schizosaccharomyces pombe

Adam P. Rosebrock, B. Futcher, J. Leatherwood, 2005, PLoS biology.

A new transcription factor for mitosis: in Schizosaccharomyces pombe, the RFX transcription factor Sak1 works with forkhead factors to regulate mitotic expression

B. Futcher, J. Leatherwood, A. Garg, 2015, Nucleic acids research.

Repression of Meiotic Genes by Antisense Transcription and by Fkh2 Transcription Factor in Schizosaccharomyces pombe

Adam P. Rosebrock, B. Futcher, J. Leatherwood, 2012, PloS one.

Recruitment of Cln3 Cyclin to Promoters Controls Cell Cycle Entry via Histone Deacetylase and Other Targets

B. Futcher, H. Wijnen, L. Carey, 2009, PLoS biology.

Phase Coupled Meta-analysis: sensitive detection of oscillations in cell cycle gene expression, as applied to fission yeast

B. Futcher, S. Pyne, R. Gutman, 2009, BMC Genomics.

Daughter-Specific Transcription Factors Regulate Cell Size Control in Budding Yeast

Adam P. Rosebrock, F. Cross, B. Futcher, 2009, PLoS biology.

Roles of the CDK phosphorylation sites of yeast Cdc6 in chromatin binding and rereplication.

B. Futcher, S. Honey, 2007, Molecular biology of the cell.

Identifying combinatorial regulation of transcription factors and binding motifs

Michael Q. Zhang, B. Futcher, N. Banerjee, 2004, Genome Biology.

Virus Attenuation by Genome-Scale Changes in Codon Pair Bias

J. R. Coleman, B. Futcher, S. Skiena, 2008, Science.

Mechanisms that help the yeast cell cycle clock tick: G2 cyclins transcriptionally activate G2 cyclins and repress G1 cyclins

Mike Tyers, Bruce Futcher, Kim Nasmyth, 1993, Cell.

Human D-type cyclin

B. Futcher, D. Beach, Y. Xiong, 1991, Cell.

Comparison of the Saccharomyces cerevisiae G1 cyclins: Cln3 may be an upstream activator of Cln1, Cln2 and other cyclins.

B. Futcher, M. Tyers, G. Tokiwa, 1993, The EMBO journal.

The G1 Cyclin Cln3 Promotes Cell Cycle Entry via the Transcription Factor Swi6

Bruce Futcher, B. Futcher, H. Wijnen, 2002, Molecular and Cellular Biology.

Genetic analysis of the shared role of CLN3 and BCK2 at the G(1)-S transition in Saccharomyces cerevisiae.

B. Futcher, H. Wijnen, B Futcher, 1999, Genetics.

Bck2 is a phase-independent activator of cell cycle-regulated genes in yeast

B. Futcher, M. Aldea, F. Ferrezuelo, 2009, Cell cycle.

The transcriptional network activated by Cln3 cyclin at the G1-to-S transition of the yeast cell cycle

B. Futcher, M. Aldea, Neus Colomina, 2010, Genome Biology.

Biogenesis of Yeast Telomerase Depends on the Importin Mtr10

B. Futcher, M. Aldea, F. Ferrezuelo, 2002, Molecular and Cellular Biology.

Toxic effects of excess cloned centromeres

B. Futcher, J. Carbon, J Carbon, 1986, Molecular and cellular biology.

Characterization of four B-type cyclin genes of the budding yeast Saccharomyces cerevisiae.

K Nasmyth, B. Futcher, K. Nasmyth, 1992, Molecular biology of the cell.

Yeast G1 cyclins are unstable in G1 phase

B. Futcher, M. Tyers, C. Wittenberg, 1998, Nature.

Whi3 binds the mRNA of the G1 cyclin CLN3 to modulate cell fate in budding yeast.

M Aldea, B. Futcher, T. Volpe, 2001, Genes & development.

Cyclin-Dependent Kinase Co-Ordinates Carbohydrate Metabolism and Cell Cycle in S. cerevisiae.

Bruce Futcher, Lucas Carey, B. Futcher, 2016, Molecular cell.

Far1 and Fus3 link the mating pheromone signal transduction pathway to three G1-phase Cdc28 kinase complexes

B. Futcher, M. Tyers, 1993 .

King of the castle: competition between repressors and activators on the Mcm1 platform.

Bruce Futcher, B. Futcher, J. Leatherwood, 2010, Molecular cell.

Reply to Simmonds et al.: Codon pair and dinucleotide bias have not been functionally distinguished

B. Futcher, J. Leatherwood, E. Wimmer, 2015, Proceedings of the National Academy of Sciences.

Cdc28-Clb5 (CDK-S) and Cdc7-Dbf4 (DDK) collaborate to initiate meiotic recombination in yeast.

B. Futcher, Chao Zhang, K. Shokat, 2008, Genes & development.

A developmentally regulated translational control pathway establishes the meiotic chromosome segregation pattern

Aaron S. Gajadhar, Luke E. Berchowitz, B. Futcher, 2013, Genes & development.

the meiotic chromosome segregation pattern A developmentally regulated translational control pathway establishes Material Supplemental

Aaron S. Gajadhar, Luke E. Berchowitz, B. Futcher, 2013 .

Isolation and Characterization of WHI 3 , a Size-Control Gene of Saccharomyces cerevisiae

B. Futcher, T. Volpe, R. Nash, 2001 .

A Sampling of the Yeast Proteome

B. Futcher, J. Garrels, G. Latter, 1999, Molecular and Cellular Biology.

Synthetic Biology Approaches for Vaccine Development

B. Futcher, E. Wimmer, Sam H. Shen, 2014 .

Assaying Glycogen and Trehalose in Yeast.

B. Futcher, Yuping Chen, 2017, Bio-protocol.

The Est1 Subunit of Yeast Telomerase Binds the Tlc1 Telomerase RNA

B. Futcher, K. Hidaka, J. Zhou, 2000, Molecular and Cellular Biology.

Binds the Tlc 1 Telomerase RNA The Est 1 Subunit of Yeast Telomerase

B. Futcher, K. Hidaka, J. Zhou, 2000 .

Association of the Est1 protein with telomerase activity in yeast.

B. Futcher, K. Hidaka, B. Steiner, 1996, Proceedings of the National Academy of Sciences of the United States of America.

A novel multiple affinity purification tag and its use in identification of proteins associated with a cyclin-CDK complex.

J R Yates, B. Futcher, J. Yates, 2001, Nucleic acids research.

Specialization of B-type cyclins for mitosis or meiosis in S. cerevisiae.

B. Futcher, C. Dahmann, 1995, Genetics.

Slow Translation of the 5’ ends of genes may be a non-adaptive consequence of their rapid evolutionary turn-over and slow loss of rare codons

B. Futcher, J. Leatherwood, Richard Sejour, 2022, bioRxiv.

Statistical methodology for ribosomal frameshift detection

B. Futcher, S. Skiena, Alisa Yurovsky, 2022, BCB.

A Statistical Detector for Ribosomal Frameshifts and Dual Encodings based on Ribosome Profiling

B. Futcher, S. Skiena, Alisa Yurovsky, 2022, bioRxiv.

Cloning of the vaccinia virus telomere in a yeast plasmid vector.

B. Futcher, G. McFadden, R. Morgan, 1984, Gene.

Far1 and Fus3 link the mating pheromone signal transduction pathway to three G1-phase Cdc28 kinase complexes

B. Futcher, M. Tyers, 1993 .

CLN3 functions in both daughter and mother cells of S. cerevisiae

B. Futcher, M. Tyers, M. Linskens, 1993, Cell.

meiotic recombination in yeast Cdc 28 Clb 5 ( CDKS ) and Cdc 7 Dbf 4 ( DDK ) collaborate to initiate data

B. Futcher, Chao Zhang, K. Shokat, 2008 .

Proteome studies of Saccharomyces cerevisiae: Identification and characterization of abundant proteins

Bruce Futcher, Ryuji Kobayashi, W. E. Payne, 1997, Electrophoresis.

Extensive genomic recoding by codon-pair deoptimization selective for mammals is a flexible tool to generate attenuated vaccine candidates for dengue virus 2.

B. Futcher, E. Wimmer, Yutong Song, 2019, Virology.

Meta-analysis based on control of false discovery rate: combining yeast ChIP-chip datasets

Steven Skiena, Saumyadipta Pyne, Bruce Futcher, 2006, Bioinform..

Relationship between the function and the location of G1 cyclins in S. cerevisiae.

B. Futcher, N. Edgington, 2001, Journal of cell science.

The mouse genome contains two expressed intronless retroposed pseudogenes for the sentrin/sumo-1/PIC1 conjugating enzyme Ubc9.

B. Futcher, R. Geha, E. Tsitsikov, 1998, Molecular immunology.

Association of Human Fas (CD95) with a Ubiquitin-conjugating Enzyme (UBC-FAP)*

B. Futcher, R. Geha, D. Wright, 1996, The Journal of Biological Chemistry.

Measurement of average decoding rates of the 61 sense codons in vivo

Justin Gardin, Bruce Futcher, Rukhsana Yeasmin, 2014, eLife.

The size of the nucleus increases as yeast cells grow.

Mike Tyers, Bruce Futcher, Paul Jorgensen, 2007, Molecular biology of the cell.

Cdc7-Dbf4 regulates NDT80 transcription as well as reductional segregation during budding yeast meiosis.

Adam P. Rosebrock, B. Futcher, N. M. Hollingsworth, 2008, Molecular biology of the cell.

The Fission Yeast RNA Binding Protein Mmi1 Regulates Meiotic Genes by Controlling Intron Specific Splicing and Polyadenylation Coupled RNA Turnover

B. Futcher, J. Leatherwood, Huei-Mei Chen, 2011, PloS one.

p34Cdc28-mediated control of Cln3 cyclin degradation

B. Futcher, D. Rubin, S. Sadis, 1995, Molecular and cellular biology.

Cdc 28-Mediated Control of Cln 3 Cyclin Degradation

B. Futcher, D. Rubin, S. Sadis, 1994 .

Functional overlap of sequences that activate transcription and signal ubiquitin-mediated proteolysis

B. Futcher, H. Wijnen, M. Muratani, 2000 .

Synergy between trehalose and Hsp104 for thermotolerance in Saccharomyces cerevisiae.

B. Futcher, B. Elliott, R. Haltiwanger, 1996, Genetics.

Inhibition of Gl cyclin activity by the Ras/cAMP pathway in yeast

B. Futcher, M. Tyers, T. Volpe, 1994, Nature.

DNA damage inhibits proteolysis of the B-type cyclin Clb5 in S. cerevisiae.

B. Futcher, D. Germain, J. Hendley, 1997, Journal of cell science.

Copy Correction and Concerted Evolution in the Conservation of Yeast Genes

B. Futcher, S. Skiena, Saumyadipta Pyne, 2005, Genetics.

Live Attenuated Influenza Vaccines by Computer-Aided Rational Design

Steven Skiena, Dimitris Papamichail, Charles B. Ward, 2010, Nature Biotechnology.

Pre-Phaser: Precise Cell-Cycle Phase Detector for scRNA-seq

Steven Skiena, Bruce Futcher, Alisa Yurovsky, 2019, BCB.

Identification of two functionally redundant RNA elements in the coding sequence of poliovirus using computer-generated design

Steven Skiena, Ying Liu, Charles B. Ward, 2012, Proceedings of the National Academy of Sciences.

Large-scale recoding of an arbovirus genome to rebalance its insect versus mammalian preference

Charles B. Ward, B. Futcher, E. Wimmer, 2015, Proceedings of the National Academy of Sciences.

Deliberate reduction of hemagglutinin and neuraminidase expression of influenza virus leads to an ultraprotective live vaccine in mice

B. Futcher, S. Skiena, E. Wimmer, 2013, Proceedings of the National Academy of Sciences.

Effects of the Yeast RNA-Binding Protein Whi3 on the Half-Life and Abundance of CLN3 mRNA and Other Targets

B. Futcher, Ying Cai, 2013, PloS one.

Microarrays and cell cycle transcription in yeast.

B. Futcher, B Futcher, 2000, Current opinion in cell biology.

Role of a ubiquitin-conjugating enzyme in degradation of S- and M-phase cyclins

Bruce Futcher, Wolfgang Seufert, B. Futcher, 1995, Nature.

Prokaryotic coding regions have little if any specific depletion of Shine-Dalgarno motifs

Justin Gardin, Bruce Futcher, Mohammad Ruhul Amin, 2018, PloS one.

Functional overlap of sequences that activate transcription and signal ubiquitin-mediated proteolysis.

B. Futcher, H. Wijnen, M. Muratani, 2000, Proceedings of the National Academy of Sciences of the United States of America.

mmi1 and rep2 mRNAs are novel RNA targets of the Mei2 RNA-binding protein during early meiosis in Schizosaccharomyces pombe

B. Futcher, J. Leatherwood, Kaustav Mukherjee, 2018, Open Biology.

Extensive recoding of dengue virus type 2 specifically reduces replication in primate cells without gain-of-function in Aedes aegypti mosquitoes

B. Futcher, E. Wimmer, L. Kramer, 2018, bioRxiv.

Relative contributions of the structural and catalytic roles of Rrp6 in exosomal degradation of individual mRNAs

B. Futcher, J. Leatherwood, Kaustav Mukherjee, 2016, RNA.

Cyclins in meiosis: lost in translation.

B. Futcher, 2008, Developmental cell.

Optimal codon pair bias design (extended abstract)

Steven Skiena, Nolan Donoghue, Justin Gardin, 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Protein identifications for a Saccharomyces cerevisiae protein database

C S McLaughlin, J I Garrels, G I Latter, 1994, Electrophoresis.

Cell cycle synchronization.

B. Futcher, B Futcher, Bruce Futcher, 1999, Methods in cell science : an official journal of the Society for In Vitro Biology.

Supercoiling and transcription, or vice versa?

B. Futcher, 1988, Trends in genetics : TIG.

The non-homologous end-joining pathway of S. cerevisiae works effectively in G1-phase cells, and religates cognate ends correctly and non-randomly.

B. Futcher, S. Honey, A. Grollman, 2016, DNA repair.

Gene recoding by synonymous mutations creates promiscuous intragenic transcription initiation in mycobacteria

B. Futcher, B. Ueberheide, Sara Goodwin, 2023, bioRxiv.

Re-annotation of 12,495 prokaryotic 16S rRNA 3’ ends and analysis of Shine-Dalgarno and anti-Shine-Dalgarno sequences

B. Futcher, S. Skiena, Alisa Yurovsky, 2018, PLoS ONE.

Scaling gene expression for cell size control and senescence in Saccharomyces cerevisiae

B. Futcher, Yuping Chen, 2020, Current genetics.

Differential Scaling of Gene Expression with Cell Size May Explain Size Control in Budding Yeast.

B. Futcher, S. Honey, Gang Zhao, 2020, Molecular cell.

Isolation and characterization of WHI3, a size-control gene of Saccharomyces cerevisiae.

B. Futcher, T. Volpe, R. Nash, 2001, Genetics.

Cyclins and the Wiring of the Yeast Cell Cycle

B. Futcher, B Futcher, BRUCE FUTCHER, 1996, Yeast.

TgI4 lipase: a big fat target for cell-cycle entry.

B. Futcher, 2009, Molecular cell.

Whi5 and Stb1 define redundant pathways through which the G1 cyclin Cln3 promotes cell division

B. Futcher, S. Honey, 2021 .

Molecular biology: Bound to splice

B. Futcher, J. Leatherwood, 2008, Nature.

Comparison of African, Asian, and American Zika Viruses in Swiss Webster mice: Virulence, neutralizing antibodies, and serotypes

Bruce Futcher, B. Futcher, E. Wimmer, 2016, bioRxiv.

Blast ahead

B. Futcher, 1999, Nature Genetics.

Author response: Measurement of average decoding rates of the 61 sense codons in vivo

Justin Gardin, Bruce Futcher, Ying Cai, 2014 .

A Saccharomyces cerevisiae Internet protein resource now available

J I Garrels, G I Latter, B. Futcher, 1995, Electrophoresis.

The 2 m circle plasmid ofSaccharomyces cerevisiae

B. Futcher, A. Futcher, 1988 .

Maintenance of the 2 micron circle plasmid of Saccharomyces cerevisiae by sexual transmission: an example of a selfish DNA.

B. Futcher, D. Hickey, E. Reid, 1988, Genetics.

Cyclin-Dependent Kinase Co-Ordinates Carbohydrate Metabolism and Cell Cycle in S. cerevisiae.

B. Futcher, L. Carey, Gang Zhao, 2016, Molecular cell.

No Ramp Needed: Spandrels, Statistics, and a Slippery Slope

B. Futcher, J. Leatherwood, Alisa Yurovsky, 2023, bioRxiv.