J. Glasner

发表

A Probabilistic Learning Approach to Whole-Genome Operon Prediction

David Page, Jude W. Shavlik, Mark W. Craven, 2000, ISMB.

Using Multiple Levels of Learning and Diverse Evidence Sources to Uncover Coordinately Controlled Genes

J. Shavlik, J. Glasner, M. Craven, 2000 .

The complete genome sequence of Escherichia coli K-12.

N. W. Davis, J. Glasner, F. Blattner, 1997, Science.

Modelling regulatory pathways in E. coli from time series expression profiles

David Page, Jeremy D. Glasner, Irene M. Ong, 2002, ISMB.

Interpreting microarray expression data using text annotating the genes

Jude W. Shavlik, Peter Andreae, Jeremy D. Glasner, 2002, Information Sciences.

Genome sequence of enterohaemorrhagic Escherichia coli O157:H7

N. W. Davis, E. Dimalanta, J. Glasner, 2001, Nature.

Regulatory network of Escherichia coli: consistency between literature knowledge and microarray profiles.

Araceli M. Huerta, J. Glasner, F. Blattner, 2003, Genome research.

Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli

J. Glasner, N. Perna, B. Mau, 2006, Genome Biology.

Genome-wide expression profiling in Escherichia coli K-12.

J. Glasner, F. Blattner, C. Richmond, 1999, Nucleic acids research.

Analyzing the dose-dependence of the Saccharomyces cerevisiae global transcriptional response to methyl methanesulfonate and ionizing radiation

Sean P. Palecek, J. Glasner, S. Palecek, 2006, BMC Genomics.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Martha B. Arnaud, Jeremy D. Glasner, 2006, Nucleic acids research.

Whole-Genome Plasticity among Mycobacterium avium Subspecies: Insights from Comparative Genomic Hybridizations

J. Glasner, A. Talaat, Chia-wei Wu, 2006, Journal of bacteriology.

Host range and molecular phylogenies of the soft rot enterobacterial genera pectobacterium and dickeya.

J. Glasner, N. Perna, Michael E. Hibbing, 2007, Phytopathology.

Niche-specificity and the variable fraction of the Pectobacterium pan-genome.

Bryan S. Biehl, Anna I. Rissman, J. Glasner, 2008, Molecular plant-microbe interactions : MPMI.

Tailoring a Global Iron Regulon to a Uropathogen

Kevin S. Myers, J. Glasner, N. Perna, 2020, mBio.

Genomic Interspecies Microarray Hybridization: Rapid Discovery of Three Thousand Genes in the Maize Endophyte,Klebsiella pneumoniae 342, by Microarray Hybridization with Escherichia coli K-12 Open Reading Frames

Jeremy D. Glasner, Frederick R. Blattner, Eric W. Triplett, 2001, Applied and Environmental Microbiology.

Analysis of the Phlebiopsis gigantea Genome, Transcriptome and Secretome Provides Insight into Its Pioneer Colonization Strategies of Wood

Masahiro Samejima, Bernard Henrissat, Benjamin Held, 2014, PLoS genetics.

Identification of host-microbe interaction factors in the genomes of soft rot-associated pathogens Dickeya dadantii 3937 and Pectobacterium carotovorum WPP14 with supervised machine learning

J. Glasner, N. Perna, A. Charkowski, 2014, BMC Genomics.

Variation in transposable element sequence and activity in the nematode Caenorhabditis elegans

J. Glasner, 1996 .

CGHScan: finding variable regions using high-density microarray comparative genomic hybridization data

Bradley D. Anderson, Michael C. Gilson, J. Glasner, 2006, BMC Genomics.

Differential Expression of Iron Acquisition Genes by Brucella melitensis and Brucella canis during Macrophage Infection

J. Glasner, G. Splitter, L. Eskra, 2012, PloS one.

Transcriptome Changes Associated with Anaerobic Growth in Yersinia intermedia (ATCC29909)

J. Glasner, N. Perna, P. Kiley, 2013, PloS one.

Genomics of enterobacteriaceae

J. Glasner, N. Perna, 2005 .

Gene Ontology annotation highlights shared and divergent pathogenic strategies of type III effector proteins deployed by the plant pathogen Pseudomonas syringae pv tomato DC3000 and animal pathogenic Escherichia coli strains

J. Glasner, N. Perna, C. Collmer, 2009, BMC Microbiology.

Systematic Mutagenesis of the Escherichia coli Genome

Jeremy D. Glasner, Frederick R. Blattner, David Frisch, 2004, Journal of bacteriology.

Complete Genome Sequence of the Plant Pathogen Erwinia amylovora Strain ATCC 49946

J. Glasner, N. Perna, M. Quail, 2010, Journal of bacteriology.

Genomic mining for Aspergillus natural products.

Nancy P Keller, J. Glasner, R. Murillo, 2006, Chemistry & biology.

Annotation and overview of the Pseudomonas savastanoi pv. savastanoi NCPPB 3335 draft genome reveals the virulence gene complement of a tumour-inducing pathogen of woody hosts.

Bryan S. Biehl, J. Glasner, N. Perna, 2010, Environmental microbiology.

Evolution of the metabolic and regulatory networks associated with oxygen availability in two phytopathogenic enterobacteria

J. Glasner, N. Perna, P. Kiley, 2012, BMC Genomics.

Genome Sequence of the Plant-Pathogenic Bacterium Dickeya dadantii 3937

Frédéric Barras, Sheng Yang He, Martine Boccara, 2011, Journal of bacteriology.

Unifying Themes in Microbial Associations with Animal and Plant Hosts Described Using the Gene Ontology

Marcus C. Chibucos, Ralph A. Dean, Jeremy D. Glasner, 2010, Microbiology and Molecular Biology Reviews.

Reordering contigs of draft genomes using the Mauve Aligner

Aaron E. Darling, Jeremy D. Glasner, Nicole T. Perna, 2009, Bioinform..

Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens

Sam Zaremba, Jeremy D. Glasner, Mila Ramos-Santacruz, 2009, BMC Bioinformatics.

AR TICLE The Complete Genome Sequence of Escherichia coli K-12

N. W. Davis, J. Glasner, F. Blattner, 2013 .

Genome-Scale Analysis of the Uses of the Escherichia coli Genome: Model-Driven Analysis of Heterogeneous Data Sets

Jeremy D. Glasner, Bernhard Ø. Palsson, Markus J. Herrgård, 2003, Journal of bacteriology.

Gene replacement without selection: regulated suppression of amber mutations in Escherichia coli.

J. Glasner, F. Blattner, C. Herring, 2003, Gene.

Comparative Whole-Genome Hybridization Reveals Genomic Islands in Brucella Species

J. Glasner, G. Splitter, G. Rajashekara, 2004, Journal of bacteriology.

Complete Genome Sequence of Dickeya dianthicola ME23, a Pathogen Causing Blackleg and Soft Rot Diseases of Potato

Steven B. Johnson, J. Glasner, N. Perna, 2019, Microbiology Resource Announcements.

The evolution of metabolic networks of E. coli

Jeremy D. Glasner, Jennifer L. Reed, Nicole T. Perna, 2011, BMC Systems Biology.

Caenorhabditis elegans contains genes encoding two new members of the Zn-containing alcohol dehydrogenase family

Jeremy D. Glasner, J. Glasner, T. Kocher, 1995, Journal of Molecular Evolution.

ASAP: a resource for annotating, curating, comparing, and disseminating genomic data

Aaron E. Darling, Jeremy D. Glasner, Nicole T. Perna, 2005, Nucleic Acids Res..

ASAP, a systematic annotation package for community analysis of genomes

Michael K. Gilson, Aaron E. Darling, Jeremy D. Glasner, 2003, Nucleic Acids Res..

A new asset for pathogen informatics--the Enteropathogen Resource Integration Center (ERIC), an NIAID Bioinformatics Resource Center for Biodefense and Emerging/Re-emerging Infectious Disease.

Sam Zaremba, David Pot, Michael Rusch, 2007, Advances in experimental medicine and biology.

Regulation of Iron Transport in Streptococcus pneumoniae by RitR, an Orphan Response Regulator

J. Glasner, B. Weisblum, A. Ulijasz, 2004, Journal of bacteriology.

Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria

Yu Qiu, Sam Zaremba, Aaron E. Darling, 2007, Nucleic Acids Res..

A Draft Genome Sequence Reveals the Helminthosporium solani Arsenal for Cell Wall Degradation

J. Glasner, A. Charkowski, Chakradhar Mattupalli, 2014, American Journal of Potato Research.

Predicting bacterial transcription units using sequence and expression data

Yu Qiu, Mark Craven, Mingzhu Liu, 2003, ISMB.

A Bayesian Network Approach to Operon Prediction

David Page, Jude W. Shavlik, Mark W. Craven, 2003, Bioinform..

Bipolar Fashion Rnai and in Vivo Imaging

J. Glasner, N. Perna, V. Burland, 2022 .

Prokka: rapid prokaryotic genome annotation

Torsten Seemann, Bryan S. Biehl, Anna I. Rissman, 2014, Bioinform..

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Martha B. Arnaud, J. Glasner, F. Blattner, 2006, Nucleic acids research.

Genome analysis Reordering contigs of draft genomes using the Mauve Aligner

Bryan S. Biehl, Anna I. Rissman, J. Glasner, 2009 .

GETools: gene expression tool for analysis of transcriptome experiments in E. coli

Julio Collado-Vides, Jeremy D. Glasner, Araceli M. Huerta, 2002 .

Unifying Themes in Microbial Associations with Animal and Plant Hosts Described Using the Gene Ontology

Bryan S. Biehl, J. Glasner, N. Perna, 2010, Microbiology and Molecular Biology Reviews.

Reordering contigs of draft genomes using the Mauve Aligner

Bryan S. Biehl, Anna I. Rissman, J. Glasner, 2009, Bioinform..

Bmc Microbiology

Bryan S. Biehl, J. Glasner, N. Perna, 2022 .

Using Comparative Genomics for Inquiry-Based Learning to Dissect Virulence of Escherichia coli O157:H7 and Yersinia pestis

Jeremy D. Glasner, Nicole T. Perna, Lois M. Banta, 2012, CBE life sciences education.