C. Ouzounis

发表

Conserved Clusters of Functionally Related Genes in Two Bacterial Genomes

A. Valencia, J. Tamames, G. Casari, 1997, Journal of Molecular Evolution.

Protein interaction maps for complete genomes based on gene fusion events

Anton J. Enright, C. Ouzounis, A. Enright, 1999, Nature.

From genome sequences to protein function

C. Sander, P. Bork, C. Ouzounis, 1994 .

An efficient algorithm for large-scale detection of protein families.

Anton J. Enright, C. Ouzounis, S. Dongen, 2002, Nucleic acids research.

Sensitive detection of sequence similarity using combinatorial pattern discovery: A challenging study of two distantly related protein families

C. Ouzounis, I. Rigoutsos, N. Darzentas, 2005, Proteins.

TEXTQUEST: Document Clustering of MEDLINE Abstracts For Concept Discovery In Molecular Biology

Anton J. Enright, Christos A. Ouzounis, Ioannis Iliopoulos, 2000, Pacific Symposium on Biocomputing.

Computational comparisons of model genomes.

C. Sander, A. Valencia, J. Tamames, 1996, Trends in biotechnology.

Are splicing mutations the most frequent cause of hereditary disease?

R. Guigó, C. Ouzounis, G. Parra, 2005, FEBS letters.

Genome-wide identification of genes likely to be involved in human genetic disease.

C. Ouzounis, N. López-Bigas, 2004, Nucleic acids research.

COmplete GENome Tracking (COGENT): A Flexible Data Environment for Computational Genomics

Anton J. Enright, Christos A. Ouzounis, Paul Janssen, 2003, Bioinform..

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

C. Ouzounis, P. Karp, V. Kunin, 2005, Nucleic acids research.

Detection of functional modules from protein interaction networks

Anton J. Enright, C. Ouzounis, A. Enright, 2003, Proteins.

Sequence-based feature prediction and annotation of proteins

M. Tress, A. Valencia, P. Bork, 2009, Genome Biology.

The balance of driving forces during genome evolution in prokaryotes.

C. Ouzounis, V. Kunin, 2003, Genome research.

Genome sequences and great expectations

C. Sander, A. Valencia, C. Ouzounis, 2000, Genome Biology.

Toward unrestricted use of public genomic data

Rick L. Stevens, G. Weinstock, P. Bork, 2019, Science.

Modeling the percolation of annotation errors in a database of protein sequences

Walter R. Gilks, Sophia Tsoka, Christos A. Ouzounis, 2002, Bioinform..

Errors in Genome Reviews

C. Ouzounis, N. Kyrpides, 1998, Science.

Analysis of the Thermotoga maritima genome combining a variety of sequence similarity and genome context tools.

C. Ouzounis, R. Overbeek, I. Iliopoulos, 2000, Nucleic acids research.

Whole‐genome sequence annotation: ‘Going wrong with confidence’

C. Ouzounis, N. Kyrpides, 1999, Molecular microbiology.

Recent developments and future directions in computational genomics

C. Ouzounis, S. Tsoka, 2000, FEBS letters.

Identification of thermophilic species by the amino acid compositions deduced from their genomes.

David P. Kreil, C. Ouzounis, 2001, Nucleic acids research.

Transcription in archaea.

C. Ouzounis, N. Kyrpides, N C Kyrpides, 1999, Proceedings of the National Academy of Sciences of the United States of America.

Computational disease gene identification: a concert of methods prioritizes type 2 diabetes and obesity candidate genes

Frances S. Turner, C. Ouzounis, A. Adeyemo, 2006, Nucleic acids research.

Structural and functional properties of genes involved in human cancer

Christos A Ouzounis, Núria López-Bigas, Desmond G Higgins, 2006, BMC Genomics.

A path towards SARS-CoV-2 attenuation: metabolic pressure on CTP synthesis rules the virus evolution

C. Ouzounis, Junhua Li, A. Danchin, 2020, Genome biology and evolution.

Protein families and TRIBES in genome sequence space.

Anton J. Enright, Victor Kunin, Anton J Enright, 2003, Nucleic acids research.

Percolation of annotation errors through hierarchically structured protein sequence databases.

C. Ouzounis, W. Gilks, B. Audit, 2005, Mathematical biosciences.

KOW: a novel motif linking a bacterial transcription factor with ribosomal proteins.

C. Ouzounis, N. Kyrpides, C. Woese, 1996, Trends in biochemical sciences.

Metabolic database systems for the analysis of genome‐wide function

C. Ouzounis, S. Tsoka, 2003, Biotechnology and bioengineering.

Genome‐wide detection and family clustering of ion channels

R. Harte, C. Ouzounis, 2002, FEBS letters.

Transcription regulation and environmental adaptation in bacteria.

C. Ouzounis, V. de Lorenzo, I. Cases, 2003, Trends in microbiology.

Genome evolution reveals biochemical networks and functional modules

P. Bork, C. Ouzounis, E. Zdobnov, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Comparative genomics of transcriptional control in the human malaria parasite Plasmodium falciparum.

C. Ouzounis, R. Coulson, N. Hall, 2004, Genome research.

Orthology: another terminology muddle.

C. Ouzounis, 1999, Trends in genetics : TIG.

Functional associations of proteins in entire genomes by means of exhaustive detection of gene fusions

Anton J. Enright, C. Ouzounis, A. Enright, 2001, Genome Biology.

Classification schemes for protein structure and function

Anton J. Enright, C. Ouzounis, A. Enright, 2003, Nature Reviews Genetics.

Ancestral state reconstruction of metabolic pathways across pangenome ensembles

C. Ouzounis, C. Médigue, J. van Helden, 2020, Microbial genomics.

Myriads of protein families, and still counting

Victor de Lorenzo, Ildefonso Cases, Victor Kunin, 2003, Genome Biology.

Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains

Rick Stevens, Folker Meyer, Victor Markowitz, 2014, PLoS biology.

An updated metabolic view of the Bacillus subtilis 168 genome.

Anne Morgat, Antoine Danchin, Eugeni Belda, 2013, Microbiology.

Annotation inconsistencies beyond sequence similarity-based function prediction – phylogeny and genome structure

Christos A. Ouzounis, Vasilis J. Promponas, Ioannis Iliopoulos, 2015, Standards in Genomic Sciences.

DisProt: intrinsic protein disorder annotation in 2020

Silvio C. E. Tosatto, Arne Elofsson, Marco Necci, 2019, Nucleic Acids Res..

Lawrence Berkeley National Laboratory Recent Work Title HipMCL : a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks

Georgios A. Pavlopoulos, C. Ouzounis, A. Buluç, 2018 .

HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks

Georgios A. Pavlopoulos, Ariful Azad, Aydin Buluç, 2018, Nucleic acids research.

Stereotyped patterns of somatic hypermutation in subsets of patients with chronic lymphocytic leukemia: implications for the role of antigen selection in leukemogenesis.

Nikolaos Laoutaris, Kostas Stamatopoulos, Dominique Vaur, 2007, Blood.

An exponential core in the heart of the yeast protein interaction network.

Benjamin Audit, Christos A Ouzounis, C. Ouzounis, 2005, Molecular biology and evolution.

What's in a genome?

Chris Sander, Peer Bork, Christos Ouzounis, 1992, Nature.

Sequence evidence for common ancestry of eukaryotic endomembrane coatomers

C. Ouzounis, B. Blencowe, V. Promponas, 2015, Scientific Reports.

Reproducibility in genome sequence annotation: the Plasmodium falciparum chromosome 2 case

Sophia Tsoka, C. Ouzounis, S. Tsoka, 1999, FEBS letters.

No wisdom in the crowd: genome annotation in the era of big data – current status and future prospects

Antoine Danchin, Christos Ouzounis, C. Ouzounis, 2018, Microbial biotechnology.

Genequiz II: Automatic Function Assignment For Genome Sequence Analysis

C. Sander, A. Valencia, G. Casari, 1996 .

Ancestral state reconstructions for genomes.

Christos A Ouzounis, C. Ouzounis, 2005, Current opinion in genetics & development.

From genes to genomes: universal scale-invariant properties of microbial chromosome organisation.

Benjamin Audit, Christos A Ouzounis, C. Ouzounis, 2003, Journal of molecular biology.

Measuring genome conservation across taxa: divided strains and united kingdoms

Christos A. Ouzounis, Leon Goldovsky, Victor Kunin, 2005, Nucleic acids research.

Functional Genomics Evidence Unearths New Moonlighting Roles of Outer Ring Coat Nucleoporins

Christos A. Ouzounis, Vasilis J. Promponas, Benjamin J. Blencowe, 2014, Scientific Reports.

Protein interactionmaps forcomplete genomesbasedongenefusionevents

Anton J. Enright, C. Ouzounis, A. Enright, 1999 .

Transcriptome classification reveals molecular subtypes in psoriasis

C. Ouzounis, S. Tsoka, F. Nestle, 2012, BMC Genomics.

The quest for an upper limit in systems biology

C. Ouzounis, I. Iliopoulos, V. Promponas, 2012 .

Sequence variation, common tissue expression patterns and learning models: a genome-wide survey of vertebrate ribosomal proteins

Konstantinos A Kyritsis, C. Ouzounis, L. Angelis, 2020, NAR genomics and bioinformatics.

BioPAXViz: a cytoscape application for the visual exploration of metabolic pathway evolution

Christos A. Ouzounis, Fotis E. Psomopoulos, Shakuntala Baichoo, 2017, Bioinform..

Developing computational biology at meridian 23° E, and a little eastwards

C. Ouzounis, 2018, Journal of Biological Research-Thessaloniki.

Immunophenotyping and machine learning identify distinct immunotypes that predict COVID-19 clinical severity

C. Ouzounis, M. Jaimes, H. V. D. van de Werken, 2021, medRxiv.

A recent origin of Orf3a from M protein across the coronavirus lineage arising by sharp divergence

C. Ouzounis, 2020, Computational and Structural Biotechnology Journal.

Prediction of Enzyme Classi cation from Protein Sequence without Homology

C. Ouzounis, P. Karp, M. Krummenacker, 1998 .

An intrinsically disordered proteins community for ELIXIR

Silvio C. E. Tosatto, Richard J. Edwards, Norman E. Davey, 2019, F1000Research.

A Million Annotations for the Molecular Biologist

Christos A. Ouzounis, C. Ouzounis, 2000, German Conference on Bioinformatics.

Genome-wide expression patterns in physiological cardiac hypertrophy

C. Ouzounis, S. Tsoka, I. Drozdov, 2010, BMC Genomics.

Protein coalitions in a core mammalian biochemical network linked by rapidly evolving proteins

John M. Hancock, C. Ouzounis, S. Tsoka, 2011, BMC Evolutionary Biology.

Spatial Structure of Evolutionary Models of Dialects in Contact

C. Ouzounis, Yugo Murawaki, 2015, PloS one.

Metabolic innovations towards the human lineage

J. Thornton, C. Ouzounis, Leon Goldovsky, 2008, BMC Evolutionary Biology.

An intrinsically disordered proteins community for ELIXIR [version 1; peer review: 2 approved]

Richard J. Edwards, Philippe Le Mercier, J. M. Hancock, 2020 .

Lineage-specific partitions in archaeal transcription.

C. Ouzounis, R. Coulson, Nathalie Touboul, 2007, Archaea.

Automated Genome Functional Annotation for Structural Genomics

C. Ouzounis, S. Tsoka, 2002 .

Computational analysis of metabolic networks

C. Ouzounis, J. Helden, V. Schächter, 2008 .

Hypothesis, analysis and synthesis: it’s all Greek to me!

C. Ouzounis, J. Ioannidis, A. Danchin, 2019, bioRxiv.

Hypothesis, analysis and synthesis, it's all Greek to me

C. Ouzounis, J. Ioannidis, A. Danchin, 2019, eLife.

Bioinformatics computation of metabolic models from sequenced genomes

C. Ouzounis, P. Karp, 2015 .

Automated metabolic reconstruction for Methanococcus jannaschii.

C. Ouzounis, S. Tsoka, D. Simon, 2004, Archaea.

CORRIE: enzyme sequence annotation with confidence estimates

Walter R. Gilks, Christos A. Ouzounis, Emmanuel D. Levy, 2007, BMC Bioinformatics.

Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, Halkidiki, Greece, June 21-26, 1997

Chris Sander, Alfonso Valencia, Peter D. Karp, 1997, ISMB.

BRIDE v2: A Validated Collection of Genes Involved in the Mammalian Brain Response to Low-Dose Ionizing Radiation

C. Ouzounis, L. Angelis, Christos Karapiperis, 2022, Radiation.

Copy Number and Loss of Heterozygosity Detected by SNP Array of Formalin-Fixed Tissues Using Whole-Genome Amplification

C. Ouzounis, I. Drozdov, M. Mcgurk, 2011, PloS one.

Bacterial sigma 70 transcription factor DNA-binding domains in the archaeon Methanococcus jannaschii.

C. Ouzounis, N. Kyrpides, 1997, Journal of molecular evolution.

Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology

Alfonso Valencia, Christos A. Ouzounis, Terry Gaasterland, 1996 .

Probabilistic annotation of protein sequences based on functional classifications

Walter R. Gilks, Christos A. Ouzounis, Emmanuel D. Levy, 2005, BMC Bioinformatics.

MagicMatch - cross-referencing sequence identifiers across databases

Anton J. Enright, Christos A. Ouzounis, Leon Goldovsky, 2005, Bioinform..

Comparison of sequence masking algorithms and the detection of biased protein sequence regions

Christos A. Ouzounis, David P. Kreil, C. Ouzounis, 2003, Bioinform..

CAST: an iterative algorithm for the complexity analysis of sequence tracts

Chris Sander, Anton J. Enright, Sophia Tsoka, 2000, Bioinform..

HinCyc: A Knowledge Base of the Complete Genome and Metabolic Pathways of H. influenzae

Peter D. Karp, Suzanne M. Paley, Christos A. Ouzounis, 1996, ISMB.

Taxonomic Identification of Mediterranean Pines and Their Hybrids Based on the High Resolution Melting (HRM) and trnL Approaches: From Cytoplasmic Inheritance to Timber Tracing

C. Ouzounis, Ioannis Ganopoulos, A. Tsaftaris, 2013, PloS one.

Parallel origins of the nucleosome core and eukaryotic transcription from Archaea

C. Ouzounis, N. Kyrpides, 1996, Journal of Molecular Evolution.

Nucleic acid-binding metabolic enzymes: Living fossils of stereochemical interactions?

C. Ouzounis, N. Kyrpides, 1995, Journal of Molecular Evolution.

TFIIB, an evolutionary link between the transcription machineries of archaebacteria and eukaryotes

Chris Sander, Christos Ouzounis, C. Sander, 1992, Cell.

The phylogenetic extent of metabolic enzymes and pathways.

Sophia Tsoka, Christos A Ouzounis, C. Ouzounis, 2003, Genome research.

Automated genome sequence analysis and annotation

Miguel A. Andrade-Navarro, Alfonso Valencia, Christos A. Ouzounis, 1999, Bioinform..

Robustness of Metabolic Map Reconstruction

Christos A. Ouzounis, Dag G. Ahrén, C. Ouzounis, 2004, J. Bioinform. Comput. Biol..

Early bioinformatics: the birth of a discipline - a personal view

Alfonso Valencia, Christos A. Ouzounis, A. Valencia, 2003, Bioinform..

Computational complexity of algorithms for sequence comparison, short-read assembly and genome alignment

Christos A. Ouzounis, Shakuntala Baichoo, C. Ouzounis, 2017, Biosyst..

Dictionary building via unsupervised hierarchical motif discovery in the sequence space of natural proteins

C Ouzounis, I Rigoutsos, A Floratos, 1999, Proteins.

The Emergence of Bioinformatics: Historical Perspective, Quick Overview and Future Trends

Christos A. Ouzounis, C. Ouzounis, 2009 .

A path towards SARS-CoV-2 attenuation: metabolic pressure on CTP synthesis rules the virus evolution

C. Ouzounis, Junhua Li, A. Danchin, 2020, bioRxiv.

Highly consistent patterns for inherited human diseases at the molecular level

Christos A. Ouzounis, Benjamin J. Blencowe, Núria López-Bigas, 2006, Bioinform..

Tumorigenic Properties of Iron Regulatory Protein 2 (IRP2) Mediated by Its Specific 73-Amino Acids Insert

C. Ouzounis, I. Drozdov, K. Pantopoulos, 2010, PloS one.

Genetic variation between Helicobacter pylori strains: gene acquisition or loss?

Santiago Garcia-Vallvé, Christos A Ouzounis, C. Ouzounis, 2002, Trends in microbiology.

Strain-specific genes of Helicobacter pylori: distribution, function and dynamics.

C. Ouzounis, B. Audit, P. Janssen, 2001, Nucleic acids research.

Emergence, development and diversification of the TGF-β signalling pathway within the animal kingdom

C. Ouzounis, L. Huminiecki, Leon Goldovsky, 2009, BMC Evolutionary Biology.

Functional evolution of the yeast protein interaction network.

Victor Kunin, Christos A Ouzounis, C. Ouzounis, 2004, Molecular biology and evolution.

GeneTRACE - Reconstruction of Gene Content of Ancestral Species

Christos A. Ouzounis, Victor Kunin, C. Ouzounis, 2003, Bioinform..

The properties of protein family space depend on experimental design

Christos A. Ouzounis, Sarah A. Teichmann, Martijn A. Huynen, 2005, Bioinform..

Biological information extraction and co-occurrence analysis.

Ioannis Iliopoulos, Christos A Ouzounis, Georgios A Pavlopoulos, 2014, Methods in molecular biology.

EUCLID: automatic classification of proteins in functional classes by their database annotations

Chris Sander, Alfonso Valencia, Christos A. Ouzounis, 1998, Bioinform..

Prediction of Enzyme Classification from Protein Sequence without the Use of Sequence Similarity

Peter D. Karp, Marie desJardins, Christos A. Ouzounis, 1997, ISMB.

Functional versatility and molecular diversity of the metabolic map of Escherichia coli.

S Tsoka, C. Ouzounis, S. Tsoka, 2001, Genome research.

GeneQuiz: A Workbench for Sequence Analysis

Chris Sander, Alfonso Valencia, Reinhard Schneider, 1994, ISMB.

A global metagenomic map of urban microbiomes and antimicrobial resistance

Stephanie L. Hyland, Nora C. Toussaint, Paweł P. Łabaj, 2021, Cell.

The net of life: reconstructing the microbial phylogenetic network.

Leon Goldovsky, Nikos Darzentas, Victor Kunin, 2005, Genome research.

Transcription-associated protein families are primarily taxon-specific

Anton J. Enright, Christos A. Ouzounis, Richard M. R. Coulson, 2001, Bioinform..

138 FUNCTIONAL GENOMICS: REVISITING THE LINK BETWEEN SCOLIOSIS AND CONGENITAL HEART DISEASE

C. Ouzounis, M. Gatzoulis, E. Tsiridis, 2011 .

A Systems Model for Immune Cell Interactions Unravels the Mechanism of Inflammation in Human Skin

Chrysanthi Ainali, Frank O. Nestle, Sophia Tsoka, 2010, PLoS Comput. Biol..

Understanding Specialized Ribosomal Protein Functions and Associated Ribosomopathies by Navigating Across Sequence, Literature, and Phenotype Information Resources

Konstantinos A Kyritsis, C. Ouzounis, L. Angelis, 2019, Leveraging Biomedical and Healthcare Data.

Universal Protein Families and the Functional Content of the Last Universal Common Ancestor

Nikos Kyrpides, Ross Overbeek, Christos Ouzounis, 1999, Journal of Molecular Evolution.

Ready for a motif submission? A proposed checklist.

P Bork, C Ouzounis, J McEntyre, 1995, Trends in biochemical sciences.

SONNHAMMER reading frames of yeast chromosome III Comprehensive sequence analysis of the 182 predicted open

C. Sander, C. Ouzounis, E. Sonnhammer, 2002 .

A database of protein structure families with common folding motifs

C. Sander, L. Holm, L. Holm, 1992, Protein science : a publication of the Protein Society.

Inference of Pathway Decomposition Across Multiple Species Through Gene Clustering

Pericles A. Mitkas, Christos A. Ouzounis, Fotis E. Psomopoulos, 2015, Int. J. Artif. Intell. Tools.

Multi-genome Core Pathway Identification through Gene Clustering

Pericles A. Mitkas, Christos A. Ouzounis, Fotis E. Psomopoulos, 2012, AIAI.

A minimal estimate for the gene content of the last universal common ancestor--exobiology from a terrestrial perspective.

Leon Goldovsky, Nikos Darzentas, Victor Kunin, 2006, Research in microbiology.

Experimental evidence validating the computational inference of functional associations from gene fusion events: a critical survey

Christos A. Ouzounis, Vasilis J. Promponas, Ioannis Iliopoulos, 2012, Briefings Bioinform..

Annotating unknown species of urban microorganisms on a global scale unveils novel functional diversity and local environment association.

Paweł P. Łabaj, C. Ouzounis, E. Castro-Nallar, 2021, Environmental research.

Disease association and comparative genomics of compositional bias in human proteins

C. Ouzounis, A. Chasapi, V. Makri, 2023, F1000Research.

BioTextQuest: a knowledge integration platform for literature mining and concept discovery

Reinhard Schneider, Christos A. Ouzounis, Georgios A. Pavlopoulos, 2014 .

GeneRAGE: a robust algorithm for sequence clustering and domain detection

Anton J. Enright, Christos A. Ouzounis, C. Ouzounis, 2000, Bioinform..

Promoter Complexity and Tissue-Specific Expression of Stress Response Components in Mytilus galloprovincialis, a Sessile Marine Invertebrate Species

Sophia Tsoka, Christos A. Ouzounis, Ignat Drozdov, 2010, PLoS Comput. Biol..

The phylogenetic diversity of eukaryotic transcription.

Christos A Ouzounis, C. Ouzounis, R. Coulson, 2003, Nucleic acids research.

Disentangling the complexity of low complexity proteins

Silvio C. E. Tosatto, Dariusz Plewczynski, Aleksandra Gruca, 2019, Briefings Bioinform..

CoGenT++: an extensive and extensible data environment for computational genomics

John M. Hancock, Anton J. Enright, Sophia Tsoka, 2005, Bioinform..

BioLayout-an automatic graph layout algorithm for similarity visualization

Anton J. Enright, Christos A. Ouzounis, C. Ouzounis, 2001, Bioinform..

Evaluation of annotation strategies using an entire genome sequence

Miguel A. Andrade-Navarro, Alfonso Valencia, Anton J. Enright, 2003, Bioinform..

Maps, books and other metaphors for systems biology.

Christos Ouzounis, Pierre Mazière, C. Ouzounis, 2006, Bio Systems.

Denoising inferred functional association networks obtained by gene fusion analysis

Anton J. Enright, Shiri Freilich, Leon Goldovsky, 2007, BMC Genomics.

The past, present and future of genome-wide re-annotation

Peter D Karp, Christos A Ouzounis, C. Ouzounis, 2002, Genome Biology.

ThiD-TenA: A Gene Pair Fusion in Eukaryotes

C. Ouzounis, N. Kyrpides, 1997, Journal of Molecular Evolution.

Assessing Proteinase K Resistance of Fish Prion Proteins in a Scrapie-Infected Mouse Neuroblastoma Cell Line

C. Ouzounis, T. Sklaviadis, Evgenia Salta, 2014, Viruses.

Detection of Genomic Idiosyncrasies Using Fuzzy Phylogenetic Profiles

Pericles A. Mitkas, Christos A. Ouzounis, Fotis E. Psomopoulos, 2013, PloS one.

A Drosophila hsp70 gene contains long, antiparallel, coupled open reading frames (LAC ORFs) conserved in homologous loci

C. Sander, C. Ouzounis, P. Sideras, 1995, Journal of Molecular Evolution.

Beyond 100 genomes

Sophia Tsoka, Nuria Lopez-Bigas, Benjamin Audit, 2003, Genome Biology.

A library of sensitive position-specific scoring matrices for high-throughput identification of nuclear pore complex subunits

C. Ouzounis, V. Promponas, K. Katsani, 2023, NAR genomics and bioinformatics.

The eubacterial transcriptional activator Lrp is present in the archaeon Pyrococcus furiosus.

C. Ouzounis, N. Kyrpides, 1995, Trends in biochemical sciences.

Atypical Divergence of SARS-CoV-2 Orf8 from Orf7a within the Coronavirus Lineage Suggests Potential Stealthy Viral Strategies in Immune Evasion

C. Ouzounis, N. Kyrpides, R. Neches, 2021, mBio.

DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation

Silvio C. E. Tosatto, Cristina Marino Buslje, Konstantinos D. Tsirigos, 2021, Nucleic Acids Res..

Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function

Miguel A. Andrade-Navarro, Chris Sander, Alfonso Valencia, 1997, Comput. Appl. Biosci..

The Chlamydiales Pangenome Revisited: Structural Stability and Functional Coherence

Christos A. Ouzounis, Vasilis J. Promponas, Fotis E. Psomopoulos, 2012, Genes.

On the evolution of arginases and related enzymes

C. Ouzounis, N. Kyrpides, Christos A. Ouzounis, 1994, Journal of Molecular Evolution.

Prediction of protein interactions: metabolic enzymes are frequently involved in gene fusion

Sophia Tsoka, Christos A. Ouzounis, C. Ouzounis, 2000, Nature Genetics.

BioLayout(Java): versatile network visualisation of structural and functional relationships.

Leon Goldovsky, Ildefonso Cases, Anton J Enright, 2005, Applied bioinformatics.

Preliminary evidence for seasonality of Covid-19 due to ultraviolet radiation

C. Ouzounis, A. Danchin, A. Chasapi, 2020, F1000Research.

A history of the MetaSUB consortium: Tracking urban microbes around the globe

Paweł P. Łabaj, C. Ouzounis, Tieliu Shi, 2022, iScience.

Gene Network and Proteomic Analyses of Cardiac Responses to Pathological and Physiological Stress

Sophia Tsoka, Min Zhang, Manuel Mayr, 2013, Circulation. Cardiovascular genetics.

PuReD-MCL: a graph-based PubMed document clustering methodology

Lefteris Angelis, Christos A. Ouzounis, Theodosios Theodosiou, 2008, Bioinform..

Automatic Extraction of Biological Information from Scientific Text: Protein-Protein Interactions

Miguel A. Andrade-Navarro, Alfonso Valencia, Christian Blaschke, 1999, ISMB.

Global properties of the metabolic map of Escherichia coli.

P D Karp, C. Ouzounis, P. Karp, 2000, Genome research.

Functional Genomics Assistant (FUGA): a toolbox for the analysis of complex biological networks

Sophia Tsoka, Ignat Drozdov, Christos A Ouzounis, 2011, BMC Research Notes.

Annotation inconsistencies beyond sequence similarity-based function prediction – phylogeny and genome structure

C. Ouzounis, I. Iliopoulos, V. Promponas, 2015, Standards in genomic sciences.

Clustering the annotation space of proteins

Christos A. Ouzounis, Victor Kunin, C. Ouzounis, 2005, BMC Bioinformatics.

The bioinformatics wealth of nations

Christos A Ouzounis, Anastasia Chasapi, Vasilis J Promponas, 2020, Bioinform..

BioTextQuest+: a knowledge integration platform for literature mining and concept discovery.

Reinhard Schneider, Christos A. Ouzounis, Georgios A. Pavlopoulos, 2015, Bioinformatics.

A structure‐derived sequence pattern for the detection of type I copper binding domains in distantly related proteins

C Ouzounis, C Sander, C. Sander, 1991, FEBS letters.

A Strong Seasonality Pattern for Covid-19 Incidence Rates Modulated by UV Radiation Levels

C. Ouzounis, A. Danchin, L. Angelis, 2021, Viruses.

Brain Radiation Information Data Exchange (BRIDE): integration of experimental data from low-dose ionising radiation research for pathway discovery

Christos A. Ouzounis, Soile Tapio, Omid Azimzadeh, 2016, BMC Bioinformatics.

Establishment of computational biology in Greece and Cyprus: Past, present, and future

Lefteris Angelis, Pantelis Topalis, Evangelos Pafilis, 2019, PLoS Comput. Biol..

Genome coverage, literally speaking

Christos A. Ouzounis, Leon Goldovsky, Nikos Darzentas, 2005 .

Genome coverage, literally speaking. The challenge of annotating 200 genomes with 4 million publications.

Leon Goldovsky, Nikos Darzentas, Victor Kunin, 2005, EMBO reports.

Challenging times for bioinformatics

C. Sander, A. Valencia, P. Bork, 1995, Nature.

Rise and Demise of Bioinformatics? Promise and Progress

Christos A. Ouzounis, C. Ouzounis, 2012, PLoS Comput. Biol..

Two or three myths about bioinformatics

Christos A. Ouzounis, C. Ouzounis, 2000, Bioinform..

A genome-wide survey of RS domain proteins.

Anton J. Enright, C. Ouzounis, B. Blencowe, 2001, RNA.

H3ABioNet computational metagenomics workshop in Mauritius: training to analyse microbial diversity for Africa

C. Ouzounis, N. Mulder, S. Baichoo, 2015, Standards in Genomic Sciences.

Bovine filensin possesses primary and secondary structure similarity to intermediate filament proteins

C. Ouzounis, C. Ouzounis, A. Merdes, 1993, The Journal of cell biology.

Novel protein families in archaean genomes.

C Sander, C. Sander, C. Sander, 1995, Nucleic acids research.

PseuRECA: genome annotation and gene context analysis for Pseudomonas aeruginosa PAO1

Christian Weinel, Christos A. Ouzounis, Maria D. Ermolaeva, 2003, Bioinform..

The modular structure of NifU proteins.

C. Sander, C. Sander, P. Bork, 1994, Trends in biochemical sciences.

Automatic extraction of protein interactions from scientific abstracts.

C. Ouzounis, S. Pulman, C. Ouzounis, 1999, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.

Early bioinformatics : the birth of a discipline — a personal view

A. Valencia, C. Ouzounis, Christos A. Ouzounis, 2003 .

BioTextQuest: a web-based biomedical text mining suite for concept discovery

C. Ouzounis, I. Iliopoulos, E. Pafilis, 2011, Bioinform..

Sequence evidence for common ancestry of eukaryotic endomembrane coatomers

C. Ouzounis, B. Blencowe, V. Promponas, 2015, Scientific Reports.