S. Kasif

发表

Microbial gene identification using interpolated Markov models.

S. Salzberg, O. White, A. Delcher, 1998, Nucleic acids research.

Towards the identification of essential genes using targeted genome sequencing and comparative analysis

Stephen C. J. Parker, Adam M. Gustafson, S. Kasif, 2006, BMC Genomics.

Improved microbial gene identification with GLIMMER.

S. Salzberg, O. White, A. Delcher, 1999, Nucleic acids research.

Alignment of whole genomes.

S. Salzberg, R. Fleischmann, O. White, 1999, Nucleic acids research.

Chapter 18 Committees of decision trees

S. Salzberg, S. Kasif, David G. Heath, 1996 .

Whole-genome annotation by using evidence integration in functional-linkage networks.

S. Kasif, T. Murali, U. Karaoz, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles

J. Collins, S. Kasif, T. Gardner, 2007, PLoS biology.

Computational identification of operons in microbial genomes.

J. Szustakowski, S. Kasif, L. Fortnow, 2002, Genome research.

Initial sequencing and analysis of the human genome.

J. V. Moran, V. J. Pollara, D. Haussler, 2001, Nature.

Human-mouse gene identification by comparative evidence integration and evolutionary analysis.

S. Kasif, C. Cantor, Lingang Zhang, 2003, Genome research.

Text Classification in USENET Newsgroups: A Progress Report

Eric Brill, Simon Kasif, Scott A. Weiss, 1996 .

A Systems Biology Approach Identifies Inflammatory Abnormalities Between Mouse Strains Prior to Development of Metabolic Disease

S. Kasif, C. Kahn, Manway Liu, 2010, Diabetes.

Network-Based Analysis of Affected Biological Processes in Type 2 Diabetes Models

S. Kasif, P. Park, I. Kohane, 2007, PLoS genetics.

Protein secondary structure modelling with probabilistic networks.

A. Delcher, S. Kasif, W. Hsu, 1993, Proceedings. International Conference on Intelligent Systems for Molecular Biology.

A System for Induction of Oblique Decision Trees

Simon Kasif, Steven Salzberg, Sreerama K. Murthy, 1994, J. Artif. Intell. Res..

A Study of Remote Homology Detection

Baris E. Suzek, Z. Weng, S. Kasif, 2001 .

A computational framework for optimal masking in the synthesis of oligonucleotide microarrays.

Z. Weng, S. Kasif, C. DeLisi, 2002, Nucleic acids research.

Structural location of disease-associated single-nucleotide polymorphisms.

S. Kasif, Jie Liang, D. Goddeau, 2003, Journal of molecular biology.

Identification of Transcription Factor Binding Sites Upstream of Human Genes Regulated by the Phosphatidylinositol 3-Kinase and MEK/ERK Signaling Pathways*

S. Kasif, G. Cooper, Michael Schaffer, 2004, Journal of Biological Chemistry.

Systems biology characterization of engineered tissues.

S. Kasif, T. Murali, P. Rajagopalan, 2013, Annual review of biomedical engineering.

Immediate-Early and Delayed Primary Response Genes Are Distinct in Function and Genomic Architecture*

S. Kasif, G. Cooper, Michael Schaffer, 2007, Journal of Biological Chemistry.

Human Centered Systems in the Perspective of Organizational and Social Informatics

Simon Kasif, Blaise Cronin, Ann Bishop, 2019 .

Reconstructing and Reprogramming the Tumor-Propagating Potential of Glioblastoma Stem-like Cells

Simon Kasif, Miguel N. Rivera, Aviv Regev, 2014, Cell.

An Experimental Approach to Genome Annotation

Richard J. Roberts, Simon Kasif, Merry Buckley, 2004 .

Abilist Ie

A. Delcher, S. Kasif, 1999 .

Gene expression module discovery using gibbs sampling.

Yutao Fu, S. Kasif, T. Murali, 2004, Genome informatics. International Conference on Genome Informatics.

Data Mining Research: Opportunities and Challenges

David M. Rocke, S. Kasif, J. Ullman, 2008 .

The COMBREX Project: Design, Methodology, and Initial Results

Michael Y. Galperin, S. Salzberg, R. Greiner, 2013, PLoS biology.

Erratum: Initial sequencing and analysis of the human genome: International Human Genome Sequencing Consortium (Nature (2001) 409 (860-921))

Ronald W. Davis, J. V. Moran, V. J. Pollara, 2001 .

Artificial Intelligence A probabilistic framework for memory-based reasoning

S. Salzberg, S. Kasif, D. Waltz, 1997 .

Analysis of brain region-specific co-expression networks reveals clustering of established and novel genes associated with Alzheimer disease

J. Haines, M. Pericak-Vance, S. Kasif, 2020, Alzheimer's research & therapy.

Single-cell transcriptional networks in differentiating preadipocytes suggest drivers associated with tissue heterogeneity

S. Kasif, M. Crovella, C. Kahn, 2020, Nature Communications.

Optimized multiplex PCR: efficiently closing a whole-genome shotgun sequencing project.

S. Salzberg, D. Radune, S. Kasif, 1999, Genomics.

GC/AT-content spikes as genomic punctuation marks.

Simon Kasif, Charles R Cantor, S. Kasif, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Biological context networks: a mosaic view of the interactome

Simon Kasif, John Rachlin, Charles Cantor, 2006, Molecular systems biology.

Identification of genes with fast-evolving regions in microbial genomes.

S. Kasif, Yu Zheng, R. Roberts, 2004, Nucleic acids research.

Probabilistic Protein Function Prediction from Heterogeneous Genome-Wide Data

Simon Kasif, Eric D. Kolaczyk, Naoki Nariai, 2007, PloS one.

Biochemical Characterization of Hypothetical Proteins from Helicobacter pylori

Simon Kasif, Juan P. Albar, Rafael Bargiela, 2013, PloS one.

Characterization of Two New Aminopeptidases in Escherichia coli

S. Kasif, Yu Zheng, R. Roberts, 2005, Journal of bacteriology.

On the normalization of RNA equilibrium free energy to the length of the sequence.

Simon Kasif, S. Kasif, J. Graber, 2003, Nucleic acids research.

Modeling DNA sequences with Bayes networks

A. Delcher, S. Kasif, Ben Kao, 2007 .

Integration and Evolutionary Analysis Human – Mouse Gene Identification by Comparative Evidence

S. Kasif, C. Cantor, Lingang Zhang, 2003 .

Identification of rare germline copy number variations over-represented in five human cancer types

S. Kasif, P. Park, R. Park, 2015, Molecular Cancer.

Detecting High-Level Gene Function and Inferring Genetic Pathway Relationships Using Machine Learning Methods

S. Kasif, 2008 .

Towards An Adaptive Framework for Information

S. Kasif, E. Brill, Scott A. Weiss, 2007 .

Efficient Algorithms for Finding Multi-way Splits for Decision Trees

Simon Kasif, Steven Salzberg, Truxton Fulton, 1995, ICML.

Microbial gene identification using interpolated Markov

Simon Kasif, Arthur L. Delcher, Owen White, 1998 .

Identifying Human Interactors of SARS-CoV-2 Proteins and Drug Targets for COVID-19 using Network-Based Label Propagation

Jeffrey N. Law, S. Kasif, J. Klein-Seetharaman, 2020 .

One for all and all for One: Improving replication of genetic studies through network diffusion

J. Haines, M. Pericak-Vance, G. Schellenberg, 2018, PLoS genetics.

Learning a Hidden Matching Combinatorial Identification of Hidden Matchings with Applications to

N. Alon, S. Kasif, B. Sudakov, 2002 .

Committees of Decision

S. Kasif, Heath, TreesDavid, 1996 .

Cl 4 E Andomize Etio E Ecisio

S. Kasif, S. Richard, 1999 .

A Predictive Phosphorylation Signature of Lung Cancer

S. Kasif, T. Cai, D. Merberg, 2009, PloS one.

Novel mediation analysis of human plasma proteome and metabolome reveals mediators of improved glycemia after gastric bypass surgery

S. Kasif, M. Patti, A. Goldfine, 2019, bioRxiv.

Logic Programming on ZMOB: A Highly Parallel Machine

Simon Kasif, Jack Minker, Madhur Kohli, 1982, International Conference on Parallel Processing.

Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings

Jill P. Mesirov, Satoru Miyano, Simon Kasif, 2005, RECOMB.

We need to keep a reproducible trace of facts, predictions, and hypotheses from gene to function in the era of big data

S. Kasif, R. Roberts, 2020, PLoS biology.

Targeted in silico characterization of fusion transcripts in tumor and normal tissues via FusionInspector

Timothy L. Tickle, B. Haas, A. Regev, 2021, bioRxiv.

Phylogenetic detection of conserved gene clusters in microbial genomes

Yu Zheng, Richard J. Roberts, Simon Kasif, 2005, BMC Bioinformatics.

Artificial Tikkun Olam: AI Can Be Our Best Friend in Building an Open Human-Computer Society pdf

Simon Kasif, S. Kasif, 2020, ArXiv.

Objective: biochemical function

Richard J. Roberts, Simon Kasif, Brian P. Anton, 2014, Front. Genet..

Genomic functional annotation using co-evolution profiles of gene clusters

Simon Kasif, Richard J Roberts, S. Kasif, 2002, Genome Biology.

Additional data file 10

Simon Kasif, Carol J. Bult, Isaac S. Kohane, 2008 .

Integrating Extracellular Flux Measurements and Genome-Scale Modeling Reveals Differences between Brown and White Adipocytes.

S. Kasif, C. Kahn, Y. Tseng, 2017, Cell reports.

Predicting malaria interactome classifications from time-course transcriptomic data along the intraerythrocytic developmental cycle

Simon Kasif, Bud Mishra, Samantha Kleinberg, 2010, Artif. Intell. Medicine.

BIOINFORMATICS Integration of heterogeneous expression data sets extends the role of the retinol pathway in diabetes and insulin resistance

S. Kasif, P. Park, S. Kong, 2009 .

Gene expression Integration of heterogeneous expression data sets extends the role of the retinol pathway in diabetes and insulin resistance

S. Kasif, P. Park, I. Kohane, 2009 .

Glycogen Synthase Kinase-3 Represses Cyclic AMP Response Element-binding Protein (CREB)-targeted Immediate Early Genes in Quiescent Cells*

S. Kasif, G. Cooper, Michael Schaffer, 2007, Journal of Biological Chemistry.

Learning with a Helpful Teacher

Simon Kasif, Steven Salzberg, David G. Heath, 1991, IJCAI.

Modeling transcription factor

S. Kasif, Peter, Deyou Cai, 2008 .

The Evolution of Gene Annotation

S. Kasif, Martin Steffen, 2010 .

Parallel Solutions to Constraint Satisfaction Problems

Simon Kasif, S. Kasif, 1989, KR.

A Note on the Computational Complexity of Symmetric Connectionist Networks

Simon Kasif, Saibal Banerjee, S. Kasif, 1988 .

Efficient Parallel Term Matching

Simon Kasif, Arthur L. Delcher, A. Delcher, 1988 .

Logic Programming: A Parallel Approach

Norbert Eisinger, Simon Kasif, Jack Minker, 1982, ICLP.

ON THE COMPLEXITY OF INCREMENTAL PARALLEL COMPUTATIONS IN ARTIFICIAL INTELLIGENCE.

Simon Kasif, Arthur L. Delcher, A. Delcher, 1987 .

Parallel solutions to constraint satisfaction problems (extended abstract)

Simon Kasif, S. Kasif, 1989, KR 1989.

Thousands of missed genes found in bacterial genomes and their analysis with COMBREX

Henry Lin, Simon Kasif, Steven L Salzberg, 2012, Biology Direct.

Deep Sequencing of the Oral Microbiome Reveals Signatures of Periodontal Disease

Mihai Pop, Simon Kasif, Todd J. Treangen, 2012, PloS one.

Modeling biological data and structure with probabilistic networks1 1* Research supported by NSF Grants IRI-9529227 and IRI-9616254. Both authors also hold appointments with the Department of Computer Science, Johns Hopkins University, Baltimore, MD 21218, USA.

Simon Kasif, Arthur L. Delcher, A. Delcher, 1998 .

To Supplement or Not to Supplement: A Metabolic Network Framework for Human Nutritional Supplements

Simon Kasif, S. Kasif, Christopher D. Nogiec, 2013, PloS one.

Segmentally Variable Genes:A New Perspective on Adaptation

Simon Kasif, Richard J Roberts, S. Kasif, 2004, PLoS biology.

Accelerated Postnatal Growth Increases Lipogenic Gene Expression and Adipocyte Size in Low–Birth Weight Mice

Simon Kasif, S. Kasif, Manway Liu, 2009, Diabetes.

Analysis of gene expression in a developmental context emphasizes distinct biological leitmotifs in human cancers

Simon Kasif, Carol J Bult, Isaac S Kohane, 2008, Genome Biology.

Protein Evolution in Yeast Transcription Factor Subnetworks

S. Kasif, R. Roberts, E. Raleigh, 2010 .

Research in Computational Molecular Biology

J. Mesirov, M. Waterman, P. Pevzner, 2008 .

Metabolic modeling of muscle metabolism identifies key reactions linked to insulin resistance phenotypes

Simon Kasif, Jonathan M. Dreyfuss, S. Kasif, 2015, Molecular metabolism.

OC1: A Randomized Induction of Oblique Decision Trees

Simon Kasif, Steven Salzberg, Richard Beigel, 1993, AAAI.

Predicting protein function from protein/protein interaction data: a probabilistic approach

Stanley Letovsky, Simon Kasif, S. Kasif, 2003, ISMB.

Not All Experimental Questions Are Created Equal: Accelerating Biological Data to Knowledge Transformation (BD2K) via Science Informatics, Active Learning and Artificial Intelligence

Richard J. Roberts, Simon Kasif, Martin Steffen, 2017, bioRxiv.

Functional characterization of the YmcB and YqeV tRNA methylthiotransferases of Bacillus subtilis

S. Kasif, R. Roberts, B. Anton, 2010, Nucleic acids research.

RimO, a MiaB-like enzyme, methylthiolates the universally conserved Asp88 residue of ribosomal protein S12 in Escherichia coli

Brian P. Anton, S. Kasif, R. Roberts, 2008, Proceedings of the National Academy of Sciences.

An aberrant transcription factor network essential for Wnt signaling and stem cell maintenance in glioblastoma.

Simon Kasif, Esther Rheinbay, Mohammad Shahid, 2013, Cell reports.

Genomewide Analysis of PRC1 and PRC2 Occupancy Identifies Two Classes of Bivalent Domains

Simon Kasif, Eric S. Lander, Bradley E. Bernstein, 2008, PLoS genetics.

The complete genome sequence of a dog: a perspective.

S. Kasif, Soohyun Lee, 2006, BioEssays : news and reviews in molecular, cellular and developmental biology.

topoSNP: a topographic database of non-synonymous single nucleotide polymorphisms with and without known disease association

Simon Kasif, Jie Liang, Yan Yuan Tseng, 2004, Nucleic Acids Res..

Triplet repeat length bias and variation in the human transcriptome

A. Delcher, S. Kasif, C. Cantor, 2009, Proceedings of the National Academy of Sciences.

Hierarchical tree snipping: clustering guided by prior knowledge

Simon Kasif, Avraham A. Melkman, Dikla Dotan-Cohen, 2007, Bioinform..

Hypermutable DNA chronicles the evolution of human colon cancer

S. Kasif, R. Jain, M. Snuderl, 2014, Proceedings of the National Academy of Sciences.

A Bayesian framework for combining gene predictions

Vladimir Pavlovic, Simon Kasif, Ashutosh Garg, 2002, Bioinform..

Quantifying DNA–protein binding specificities by using oligonucleotide mass tags and mass spectroscopy

S. Kasif, Lingang Zhang, Andrea Cantor, 2007, Proceedings of the National Academy of Sciences.

Computational methods in molecular biology

Simon Kasif, Steven L. Salzberg, David B. Searls, 1998 .

Protein Secondary-Structure Modeling with Probabilistic Networks

Simon Kasif, William H. Hsu, Arthur L. Delcher, 1993, ISMB.

Protein secondary structure modelling with probabilistic networks.

A. Delcher, S. Kasif, W. Hsu, 1993, Proceedings. International Conference on Intelligent Systems for Molecular Biology.

Identification of functional links between genes using phylogenetic profiles

Simon Kasif, Charles DeLisi, Jie Wu, 2003, Bioinform..

Biological Process Linkage Networks

Simon Kasif, Avraham A. Melkman, Stan Letovsky, 2009, PloS one.

COMBREX-DB: an experiment centered database of protein function: knowledge, predictions and knowledge gaps

Richard J. Roberts, Simon Kasif, John Rachlin, 2015, Nucleic Acids Res..

COMBREX: a project to accelerate the functional annotation of prokaryotic genomes

Richard J. Roberts, Stanley Letovsky, Simon Kasif, 2010, Nucleic Acids Res..

The art of gene function prediction

Simon Kasif, T M Murali, Chang-Jiun Wu, 2006, Nature Biotechnology.

Comparative genomic analysis of lipid biosynthesis components of the DnaA regulon

S. Kasif, M. Walker, 2003 .

Quantitative Analysis of Single Nucleotide Polymorphisms within Copy Number Variation

Simon Kasif, Zhiping Weng, Charles R. Cantor, 2008, PloS one.

Multi-Node Graphs: A Framework for Multiplexed Biological Assays

Noga Alon, Simon Kasif, John Rachlin, 2006, J. Comput. Biol..

RankGene: identification of diagnostic genes based on expression data

Vladimir Pavlovic, T. M. Murali, Yang Su, 2003, Bioinform..

Extracting Conserved Gene Expression Motifs from Gene Expression Data

T. M. Murali, Simon Kasif, S. Kasif, 2002, Pacific Symposium on Biocomputing.

Defects in muscle branched-chain amino acid oxidation contribute to impaired lipid metabolism

S. Kasif, Manway Liu, M. Patti, 2016, Molecular metabolism.

A Probabilistic Framework for Memory-Based Reasoning

David W. Aha, Simon Kasif, Steven Salzberg, 1998, Artif. Intell..

Membrane metallo-endopeptidase (Neprilysin) regulates inflammatory response and insulin signaling in white preadipocytes

S. Kasif, C. Kahn, S. Dankel, 2019, Molecular metabolism.

Less is more: towards an optimal universal description of protein folds

Simon Kasif, Zhiping Weng, Joseph D. Szustakowski, 2005, ECCB/JBI.

Seeing the forest for the trees: using the Gene Ontology to restructure hierarchical clustering

Simon Kasif, Avraham A. Melkman, Dikla Dotan-Cohen, 2009, Bioinform..

Learning Nested Concept Classes with Limited Storage

Simon Kasif, Steven Salzberg, Gregory F. Sullivan, 1991, IJCAI.

Formula dissection: A parallel algorithm for constraint satisfaction

Simon Kasif, John H. Reif, Deepak D. Sherlekar, 2008, Comput. Math. Appl..

Local Consistency in Parallel Constraint Satisfaction Networks

Simon Kasif, Arthur L. Delcher, A. Delcher, 1994, Artif. Intell..

On the Parallel Complexity of Discrete Relaxation in Constraint Satisfaction Networks

Simon Kasif, S. Kasif, 1990, Artif. Intell..

On the Parallel Complexity of Some Constraint Satisfaction Problems

Simon Kasif, S. Kasif, 1986, AAAI.

Identifying Human Interactors of SARS-CoV-2 Proteins and Drug Targets for COVID-19 using Network-Based Label Propagation

Jeffrey N. Law, S. Kasif, J. Klein-Seetharaman, 2020 .

High-throughput mediation analysis of human proteome and metabolome identifies mediators of post-bariatric surgical diabetes control

S. Kasif, M. Patti, R. Seeley, 2021, Nature Communications.

Towards a Better Understanding of Memory-based Reasoning Systems

David W. Aha, Simon Kasif, Steven Salzberg, 1994, ICML.

1 A Domain For Text Classi cationAs

S. Kasif, E. Brill, Scott A. Weiss, 2008 .

GEMS: a web server for biclustering analysis of expression data

Simon Kasif, Chang-Jiun Wu, S. Kasif, 2005, Nucleic Acids Res..

Induction of Oblique Decision Trees

Simon Kasif, Steven Salzberg, David G. Heath, 1993, IJCAI.

Genes involved in complex adaptive processes tend to have highly conserved upstream regions in mammalian genomes

S. Kasif, I. Kohane, Soohyun Lee, 2005, BMC Genomics.

Interpretable network propagation with application to expanding the repertoire of human proteins that interact with SARS-CoV-2

Jeffrey N. Law, S. Kasif, J. Klein-Seetharaman, 2020, GigaScience.

On reasoning from data

Simon Kasif, David L. Waltz, S. Kasif, 1995, CSUR.

Biochemical networks: the evolution of gene annotation.

Simon Kasif, Martin Steffen, S. Kasif, 2010, Nature chemical biology.

Logarithmic-Time Updates and Queries in Probabilistic Networks pdf

Simon Kasif, Judea Pearl, Arthur L. Delcher, 1995, UAI.

Integration of relational and hierarchical network information for protein function prediction

Xiaoyu Jiang, Simon Kasif, Martin Steffen, 2008, BMC Bioinformatics.

Single-cell transcriptional networks in differentiating preadipocytes suggest drivers associated with tissue heterogeneity

S. Kasif, M. Crovella, C. Kahn, 2020, Nature Communications.

ISMB 2014 Proceedings Papers Committee

William Stafford Noble, Noah M. Daniels, D. Heckerman, 2014, Bioinformatics.

PRISM - A Parallel Inference System for Problem Solving

Simon Kasif, Jack Minker, Madhur Kohli, 1983, Logic Programming Workshop.

Learning a hidden matching

Noga Alon, Benny Sudakov, Simon Kasif, 2002, The 43rd Annual IEEE Symposium on Foundations of Computer Science, 2002. Proceedings..

Pyramid linking is a special case of ISODATA

Azriel Rosenfeld, Simon Kasif, A. Rosenfeld, 1983, IEEE Transactions on Systems, Man, and Cybernetics.

Research in Computational Molecular Biology, 12th Annual International Conference, RECOMB 2008, Singapore, March 30 - April 2, 2008. Proceedings

Martin Vingron, Limsoon Wong, J. Mesirov, 2008, Annual International Conference on Research in Computational Molecular Biology.

Local Induction of Decision Trees: Towards Interactive Data Mining

Simon Kasif, Steven Salzberg, David L. Waltz, 1996, KDD.

Combining Hierarchical Inference in Ontologies with Heterogeneous Data Sources Improves Gene Function Prediction

Xiaoyu Jiang, Simon Kasif, Martin Steffen, 2008, 2008 IEEE International Conference on Bioinformatics and Biomedicine.

Rate Estimation and Identification of COVID-19 Infections: Towards Rational Policy Making During Early and Late Stages of Epidemics

S. Kasif, R. Beigel, 2020, medRxiv.

Modeling splice sites with Bayes networks

Simon Kasif, Ben Kao, Arthur L. Delcher, 2000, Bioinform..

Research in Computational Molecular Biology: 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings (Lecture ... Science / Lecture Notes in Bioinformatics)

J. Mesirov, P. Pevzner, S. Kasif, 2005 .

Context specific protein function prediction.

Simon Kasif, Naoki Nariai, S. Kasif, 2007, Genome informatics. International Conference on Genome Informatics.

One for all and all for one: improving replication of genetic studies through network diffusion

J. Haines, M. Pericak-Vance, G. Schellenberg, 2018 .

OC1: A Randomized Induction of Oblique Decision Trees

Sreerama K. Murthy, S. Salzberg, S. Kasif, 1993, AAAI Conference on Artificial Intelligence.

Triplet repeat length bias and variation in the human transcriptome

A. Delcher, S. Kasif, C. Cantor, 2009, Proceedings of the National Academy of Sciences.

Integration of heterogeneous expression data sets extends the role of the retinol pathway in diabetes and insulin resistance

Peter J. Park, Simon Kasif, Isaac S. Kohane, 2009, Bioinform..

Automated Function Prediction Featuring a Critical Assessment of Function Annotations

M. Tress, S. Kasif, Guy Nimrod, 2011 .

One for all and all for One: Improving replication of genetic studies through network diffusion

M. Pericak-Vance, G. Schellenberg, S. Kasif, 2018, PLoS genetics.

Genomic functional annotation using co-evolution profiles of gene clusters

S. Kasif, Yu Zheng, R. Roberts, 2002, Genome Biology.

Towards a Framework for Memory-Based

ReasoningSimon, Kasif, S. Kasif, 1995 .

Improved Decision-Making in Game Trees: Recovering from Pathology

Simon Kasif, Arthur L. Delcher, A. Delcher, 1992, AAAI.

Some results on the computational complexity of symmetric connectionist networks

Simon Kasif, Saibal Banerjee, Gregory F. Sullivan, 1993, Annals of Mathematics and Artificial Intelligence.

MuPlex: multi-objective multiplex PCR assay design

Simon Kasif, John Rachlin, Charles Cantor, 2005, Nucleic Acids Res..

Seeing the forest for the trees: using the Gene Ontology to restructure hierarchical clustering

S. Kasif, A. Melkman, Dikla Dotan-Cohen, 2009, Bioinform..