C. Lawrence

发表

Extracting protein alignment models from the sequence database.

D. Lipman, A. F. Neuwald, J. Liu, 1997, Nucleic acids research.

Centroid estimation in discrete high-dimensional spaces with applications in biology

C. Lawrence, Luis Carvalho, 2008, Proceedings of the National Academy of Sciences.

Bayesian Clustering with Variable and Transformation Selections

Jun S. Liu, C. Lawrence, Junni L. Zhang, 2003 .

Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment.

Jun S. Liu, S. Altschul, M. Boguski, 1993, Science.

An expectation maximization (EM) algorithm for the identification and characterization of common sites in unaligned biopolymer sequences

A. A. Reilly, C. Lawrence, 1990, Proteins.

Bayesian Models for Multiple Local Sequence Alignment and Gibbs Sampling Strategies

Jun S. Liu, A. F. Neuwald, C. Lawrence, 1995 .

RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble.

C. Lawrence, C. Chan, Ye Ding, 2005, RNA.

A statistical sampling algorithm for RNA secondary structure prediction.

C. Lawrence, Ye Ding, 2003, Nucleic acids research.

The Bayesian Change Point and Variable Selection Algorithm: Application to the δ18O Proxy Record of the Plio-Pleistocene

C. Lawrence, E. Ruggieri, 2014 .

Change point method for detecting regime shifts in paleoclimatic time series: Application to δ18O time series of the Plio‐Pleistocene

C. Lawrence, E. Ruggieri, T. Herbert, 2009 .

Quantitative analysis of ribosome binding sites in E.coli.

T. D. Schneider, G. Stormo, L. Gold, 1994, Nucleic acids research.

Comparative analyses of multi-species sequences from targeted genomic regions

Nancy F. Hansen, J. W. Thomas, D. Haussler, 2003, Nature.

Algorithms for the optimal identification of segment neighborhoods

C. Lawrence, I. Auger, 1989 .

Human-mouse genome comparisons to locate regulatory sites

C. Lawrence, M. Palumbo, J. Fickett, 2000, Nature Genetics.

Gibbs motif sampling: Detection of bacterial outer membrane protein repeats

Jun S. Liu, A. F. Neuwald, C. Lawrence, 1995, Protein science : a publication of the Protein Society.

Automated mapping of large-scale chromatin structure in ENCODE

William Stafford Noble, Heng Lian, Robert E. Thurman, 2008, Bioinform..

Clustering of RNA secondary structures with application to messenger RNAs.

C. Lawrence, C. Chan, Ye Ding, 2006, Journal of molecular biology.

Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes.

J. Liu, C. Lawrence, C. Carmack, 2001, Nucleic acids research.

BALSA: Bayesian algorithm for local sequence alignment.

Jun S. Liu, C. Lawrence, Bobbie-Jo M Webb, 2002, Nucleic acids research.

Statistical prediction of single-stranded regions in RNA secondary structure and application to predicting effective antisense target sites and beyond.

C. Lawrence, Y. Ding, 2001, Nucleic acids research.

Factors influencing the identification of transcription factor binding sites by cross-species comparison.

C. Lawrence, C. Carmack, W. Thompson, 2002, Genome research.

Using the Gibbs Motif Sampler to Find Conserved Domains in DNA and Protein Sequences

C. Lawrence, W. Thompson, L. McCue, 2005, Current protocols in bioinformatics.

Gibbs Recursive Sampler: finding transcription factor binding sites

Eric C. Rouchka, William A. Thompson, Charles E. Lawrence, 2003, Nucleic Acids Res..

Using the Gibbs Motif Sampler for phylogenetic footprinting.

C. Lawrence, W. Thompson, L. McCue, 2007, Methods in molecular biology.

Contribution of the Histone H3 and H4 Amino Termini to Gcn4p- and Gcn5p-mediated Transcription in Yeast*

C. Lawrence, M. Palumbo, Cailin Yu, 2006, Journal of Biological Chemistry.

Decoding human regulatory circuits.

Jun S. Liu, C. Lawrence, M. Palumbo, 2004, Genome research.

Markovian structures in biological sequence alignments

Jun S. Liu, A. F. Neuwald, C. Lawrence, 1999 .

Heteroscedastic Gaussian Process Regression on the Alkenone over Sea Surface Temperatures

C. Lawrence, Taehee Lee, 2019, 1912.08843.

The Role of Uncertainty in Estimating Lead/Lag Relationships in Marine Sedimentary Archives: A Case Study From the Tropical Pacific

C. Lawrence, M. Kienast, L. Lisiecki, 2017 .

Sequencing ultra-long DNA molecules with the Oxford Nanopore MinION

Charles E. Lawrence, Susan A. Gerbi, C. Lawrence, 2015, bioRxiv.

Detection of likely transmembrane β-strand regions in sequences of mitochondrial pore proteins using the Gibbs sampler

C E Lawrence, A. F. Neuwald, C. Lawrence, 1996, Journal of bioenergetics and biomembranes.

Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites

Lee Ann McCue, Zhaohui S. Qin, Jun S. Liu, 2003, Nature Biotechnology.

An Integrated Perspective on Phylogenetic Workflows.

C. Lawrence, Mark Howison, F. Zapata, 2016, Trends in ecology & evolution.

Anatomy of a preferred target site for the bacterial insertion sequence IS903.

C. Lawrence, W. Thompson, K. Derbyshire, 2001, Journal of molecular biology.

Database search based on Bayesian alignment Jun Zhu, Roland L/ithy

C. Lawrence, 1999 .

Motifs and structural fold of the cofactor binding site of human glutamate decarboxylase

David L. Martin, C. Lawrence, K. Qu, 1998, Protein science : a publication of the Protein Society.

The Relative Inefficiency of Sequence Weights Approaches in Determining a Nucleotide Position Weight Matrix

C. Lawrence, L. Newberg, L. McCue, 2005, Statistical applications in genetics and molecular biology.

The Relative Inefficiency of Sequence Weights in Determining a Nucleotide Consensus Distribution

C. Lawrence, L. Newberg, L. McCue, 2022 .

Comparing age model techniques for the last glacial cycle: A case study of ten Iberian Margin sediment cores

Alan M. Jones, C. Lawrence, Taehee Lee, 2022, Quaternary Science Reviews.

A Gaussian process state-space model for sea surface temperature reconstruction from the alkenone paleotemperature proxy

Jun S. Liu, C. Lawrence, Taehee Lee, 2022, Environmental Data Science.

TIMEOR: a web-based tool to uncover temporal regulatory mechanisms from multi-omics data

Yanhui Hu, Norbert Perrimon, Ritambhara Singh, 2020, bioRxiv.

Title: TIMEOR: a web-based tool to uncover temporal regulatory mechanisms from multi-omics data

Ritambhara, N. Perrimon, C. Lawrence, 2020 .

Functional classification of cNMP-binding proteins and nucleotide cyclases with implications for novel regulatory pathways in Mycobacterium tuberculosis.

C E Lawrence, C. Lawrence, L. McCue, 2000, Genome research.

Measuring Global Credibility with Application to Local Sequence Alignment

Lee Ann McCue, Bobbie-Jo M. Webb-Robertson, Charles E. Lawrence, 2008, PLoS Comput. Biol..

Algorithms for the optimal identification of segment neighborhoods.

I E Auger, C E Lawrence, C. Lawrence, 1989, Bulletin of mathematical biology.

Predicting RNA hyper-editing with a novel tool when unambiguous alignment is impossible

Yiannis A. Savva, C. Lawrence, R. Reenan, 2017, BMC Genomics.

PhyloScan: identification of transcription factor binding sites using cross-species evidence

Lee Aaron Newberg, Lee Ann McCue, Charles E. Lawrence, 2007, Algorithms for Molecular Biology.

Statistical models for biological sequence motif discovery

Xiaole Liu, Mayetri Gupta, Charles E. Lawrence, 2002 .

Genome-wide analysis of A-to-I RNA editing by single-molecule sequencing in Drosophila

Philipp Kapranov, Dmitry Shtokalo, Denis Antonets, 2013, Nature Structural &Molecular Biology.

Bayesian inference on biopolymer models

Jun S. Liu, Charles E. Lawrence, C. Lawrence, 1999, Bioinform..

Sfold web server for statistical folding and rational design of nucleic acids

Ye Ding, Charles E. Lawrence, Chi Yu Chan, 2004, Nucleic Acids Res..

Bayesian adaptive sequence alignment algorithms

Jun Zhu, Jun S. Liu, Charles E. Lawrence, 1998, Bioinform..

Effect of target secondary structure on RNAi efficiency.

Chi Yu Chan, Anil Maliyekkel, Charles E Lawrence, 2007, RNA.

A probabilistic Pliocene–Pleistocene stack of benthic δ18O using a profile hidden Markov model

C. Lawrence, L. Lisiecki, D. Khider, 2017 .

NexusPSO : A Novel Algorithm to Detect Transcription Factor Binding Sites

C. Lawrence, 2018 .

An empirical energy function for threading protein sequence through the folding motif

S. Bryant, C. Lawrence, C. Lawrence, 1993, Proteins.

RNAG: a new Gibbs sampler for predicting RNA secondary structure for unaligned sequences

Charles E. Lawrence, Donglai Wei, Lauren V. Alpert, 2011, Bioinform..

The Celera Discovery SystemTM

Peter Li, Richard J. Mural, Mark Yandell, 2002, Nucleic Acids Res..

Bayesian Protein Family Classifier

Lee Ann McCue, Charles E. Lawrence, Kunbin Qu, 1998, ISMB.

Extent and nature of contacts between protein molecules in crystal lattices and between subunits of protein oligomers

S H Bryant, S. Bryant, C. Lawrence, 1997, Proteins.

Identification of the most significant amphipathic helix with application to HIV and MHV envelope proteins

C. E. Lawrence, I. E. Auger, C. Lawrence, 1990, Comput. Appl. Biosci..

Detecting non-allelic homologous recombination from high-throughput sequencing data

Benjamin J. Raphael, C. Lawrence, Matthew M. Parks, 2015, Genome Biology.

A Bayesian Statistical Algorithm for RNA Secondary Structure Prediction

Ye Ding, Charles E. Lawrence, C. Lawrence, 1999, Comput. Chem..

Comparison of Late Neogene Uk′37 and TEX86 Paleotemperature Records From the Eastern Equatorial Pacific at Orbital Resolution

C. Lawrence, K. Lawrence, I. Castañeda, 2020, Paleoceanography and Paleoclimatology.

The Gibbs Centroid Sampler

Lee Aaron Newberg, Lee Ann McCue, William A. Thompson, 2007, Nucleic Acids Res..

A phylogenetic Gibbs sampler that yields centroid solutions for cis-regulatory site prediction

Lee Aaron Newberg, Thomas M. Smith, Lee Ann McCue, 2007, Bioinform..

A Multiple Continuous Signal Alignment Algorithm with Gaussian Process Profiles and an Application to Paleoceanography

C. Lawrence, G. Gebbie, Taehee Lee, 2019 .

Dual Proxy Gaussian Process Stack: Integrating Benthic δ18𝕆 and Radiocarbon Proxies for Inferring Ages on Ocean Sediment Cores

C. Lawrence, G. Gebbie, Taehee Lee, 2019, ArXiv.

Probabilistic sequence alignment of stratigraphic records

C. Lawrence, L. Lisiecki, D. Khider, 2014 .

Structure clustering features on the Sfold Web server

Ye Ding, Charles E. Lawrence, Chi Yu Chan, 2005, Bioinform..

Characterization and visualization of RNA secondary structure Boltzmann ensemble via information theory

C. Lawrence, Wilson H. McKerrow, C. Phonsom, 2018, BMC Bioinformatics.

A Bayesian method for classification of images from electron micrographs.

Jun S. Liu, Jun S Liu, Michael Radermacher, 2002, Journal of structural biology.

A Gaussian process state-space model for atmospheric CO2 and sea surface temperature index reconstruction from boron isotope and planktonic δ18O proxies

Charles E. Lawrence, Taehee Lee, C. Lawrence, 2020, CI.

Identification of a novel class in the alpha/beta hydrolase fold superfamily: the N-myc differentiation-related proteins.

C. Lawrence, L. McCue, J. Dordick, 2002, Proteins.

Revising transcriptome assemblies with phylogenetic information.

C. Lawrence, Mark Howison, F. Zapata, 2021, PloS one.

Assessing the validity and reproducibility of genome-scale predictions

William A. Thompson, Charles E. Lawrence, Michael R. Tackett, 2013, Bioinform..

On efficient calculations for Bayesian variable selection

Charles E. Lawrence, Eric Ruggieri, C. Lawrence, 2012 .

Characterization and visualization of RNA secondary structure Boltzmann ensemble via information theory

Charles E. Lawrence, Chukiat Phonsom, Luan Lin, 2018, BMC Bioinformatics.

An Integrated Perspective on Phylogenetic Workflows.

C. Lawrence, Mark Howison, F. Zapata, 2016, Trends in ecology & evolution.

Gibbs Recursive Sampler: finding transcription factor binding sites

C. Lawrence, W. Thompson, E. Rouchka, 2003, Nucleic Acids Res..

Autoregressive Statistical Modeling of a Peru Margin Multi-proxy Holocene Record Shows Correlation Not Causation, Flickering Regimes and Persistence

C. Lawrence, B. Fox‐Kemper, T. Herbert, 2018, Journal of Statistical Physics.

Centroid estimation in discrete high-dimensional spaces with applications in biology

C. Lawrence, Luis Carvalho, 2008, Proceedings of the National Academy of Sciences.

RNAG: a new Gibbs sampler for predicting RNA secondary structure for unaligned sequences

Lauren V. Alpert, C. Lawrence, D. Wei, 2011, Bioinform..

A phylogenetic Gibbs sampler that yields centroid solutions for cis-regulatory site prediction

Thomas M. Smith, C. Lawrence, L. Newberg, 2007, Bioinform..

The Gibbs Centroid Sampler

C. Lawrence, L. Newberg, W. Thompson, 2007, Nucleic Acids Res..

Bayesian Adaptive Alignment and Inference

Jun Zhu, Jun S. Liu, Charles E. Lawrence, 1997, ISMB.

On efficient calculations for Bayesian variable selection

C. Lawrence, E. Ruggieri, C. E. Lawrence, 2012, Comput. Stat. Data Anal..