I. Nookaew

I. Nookaew, W. Visessanguan, Piroon Jenjaroenpun, 2020, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Transcriptomic Analyses Reveal Long Non-Coding RNA in Peripheral Blood Mononuclear Cells as a Novel Biomarker for Diagnosis and Prognosis of Hepatocellular Carcinoma

I. Nookaew, N. Chuaypen, P. Tangkijvanich, 2022, International journal of molecular sciences.

Conservation of Two-Component Signal Transduction Systems in E. coli , Salmonella , and Across 100,000 Bacteria of Various Bacterial Phyla

I. Nookaew, D. Ussery, T. Wassenaar, 2018 .

Normalised immune expression in remission of paediatric ITP

I. Nookaew, B. Olsson, M. Jernås, 2016, Thrombosis and Haemostasis.

Differences in gene expression and cytokine levels between newly diagnosed and chronic pediatric ITP.

I. Nookaew, B. Olsson, M. Jernås, 2013, Blood.

Potential Probiotic or Trigger of Gut Inflammation – The Janus-Faced Nature of Cannabidiol-Rich Cannabis Extract

I. Nookaew, I. Koturbash, L. Walker, 2020, Journal of dietary supplements.

In Vivo Analysis of the Viable Microbiota and Helicobacter pylori Transcriptome in Gastric Infection and Early Stages of Carcinogenesis

I. Nookaew, J. Nielsen, D. Graham, 2017, Infection and Immunity.

Piezo1 stimulates mitochondrial function via cAMP signaling

I. Nookaew, J. Xiong, Ha-Neui Kim, 2022, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

Fast and accurate preparation fatty acid methyl esters by microwave-assisted derivatization in the yeast Saccharomyces cerevisiae

I. Nookaew, J. Nielsen, S. Khoomrung, 2012, Applied Microbiology and Biotechnology.

Physiological characterization of the high malic acid-producing Aspergillus oryzae strain 2103a-68

Stephen H. Brown, I. Nookaew, J. Nielsen, 2014, Applied Microbiology and Biotechnology.

Chromosome 3p loss of heterozygosity is associated with a unique metabolic network in clear cell renal carcinoma

I. Nookaew, J. Nielsen, F. Gatto, 2014, Proceedings of the National Academy of Sciences.

Novel insights into obesity and diabetes through genome-scale metabolic modeling

Intawat Nookaew, Jens Nielsen, Leif Väremo, 2013, Front. Physiol..

Investigation of Malic Acid Production in Aspergillus oryzae under Nitrogen Starvation Conditions

Stephen H. Brown, I. Nookaew, J. Nielsen, 2013, Applied and Environmental Microbiology.

Physiological characterization of the high malic acid-producing Aspergillus oryzae strain 2103a-68

I. Nookaew, I. Remmers, J. Nielsen, 2014, Applied Microbiology and Biotechnology.

Revisiting chloroplast genomic landscape and annotation towards comparative chloroplast genomes of Rhamnaceae

I. Nookaew, W. Visessanguan, P. Ajawatanawong, 2023, BMC Plant Biology.

Stimulation of Piezo1 by mechanical signals promotes bone anabolism

Erin M. Mannen, Matthew J. Silva, I. Nookaew, 2019, eLife.

A chromosome‐level assembly of the black tiger shrimp (Penaeus monodon) genome facilitates the identification of growth‐associated genes

I. Nookaew, F. Tangy, V. M. dos Santos, 2020, bioRxiv.

Transcriptome analyses reveal the synergistic effects of feeding and eyestalk ablation on ovarian maturation in black tiger shrimp

I. Nookaew, W. Rungrassamee, W. Pootakham, 2020, Scientific Reports.

PARP1 Is Up-Regulated in Non-small Cell Lung Cancer Tissues in the Presence of the Cyanobacterial Toxin Microcystin

I. Nookaew, D. Ussery, P. Fagan, 2018, Front. Microbiol..

Unraveling Molecular Signatures of Immunostimulatory Adjuvants in the Female Genital Tract through Systems Biology

I. Nookaew, J. Nielsen, A. Harandi, 2011, PloS one.

MicroRNA regulate immune pathways in T-cells in multiple sclerosis (MS)

Intawat Nookaew, Markus Axelsson, I. Nookaew, 2013, BMC Immunology.

Integration of clinical data with a genome-scale metabolic model of the human adipocyte

I. Nookaew, P. Froguel, M. Uhlén, 2013, Molecular systems biology.

Identification of a Latin American-specific BabA adhesin variant through whole genome sequencing of Helicobacter pylori patient isolates from Nicaragua

I. Nookaew, D. Graham, L. Rabeneck, 2016, BMC Evolutionary Biology.

Glycosaminoglycan Profiling in Patients' Plasma and Urine Predicts the Occurrence of Metastatic Clear Cell Renal Cell Carcinoma.

I. Nookaew, F. Gatto, J. Nielsen, 2016, Cell reports.

Adipose Tissue Resting Energy Expenditure and Expression of Genes Involved in Mitochondrial Function Are Higher in Women than in Men

I. Nookaew, J. Nielsen, P. Froguel, 2012, The Journal of clinical endocrinology and metabolism.

Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials

Intawat Nookaew, Jens Nielsen, Rasmus Agren, 2012, BMC Systems Biology.

The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum

Intawat Nookaew, Liming Liu, Wanwipa Vongsangnak, 2013, PLoS Comput. Biol..

Single-cell gene expression analysis reveals regulators of distinct cell subpopulations among developing human neurons

Intawat Nookaew, Vladimir Espinosa Angarica, Vladimir A Kuznetsov, 2017, Genome research.

Adenine‐induced chronic renal failure in rats decreases aortic relaxation rate and alters expression of proteins involved in vascular smooth muscle calcium handling

I. Nookaew, H. Nilsson, M. Jernås, 2016, Acta physiologica.

Dietary Polyunsaturated Fatty Acids Increase Survival and Decrease Bacterial Load during Septic Staphylococcus aureus Infection and Improve Neutrophil Function in Mice

I. Nookaew, N. Andersson, J. Jansson, 2014, Infection and Immunity.

Dietary polyunsaturated fatty acids increase survival and decrease bacterial

I. Nookaew, N. Andersson, S. Nilsson, 2014 .

Single cell cortical bone transcriptomics define novel osteolineage gene sets altered in chronic kidney disease

W. R. Thompson, I. Nookaew, L. Bonewald, 2022, bioRxiv.

Eicosapentaenoic and Docosahexaenoic Acid-Enriched High Fat Diet Delays Skeletal Muscle Degradation in Mice

I. Nookaew, Otto Savolainen, A. Ross, 2016, Nutrients.

Neonatal gut colonization by Bifidobacterium is associated with higher childhood cytokine responses

I. Nookaew, A. Rudin, F. Sjöberg, 2020, Gut microbes.

Are all faecal bacteria detected with equal efficiency? A study using next-generation sequencing and quantitative culture of infants' faecal samples.

I. Nookaew, F. Sjöberg, I. Adlerberth, 2020, Journal of microbiological methods.

Simplified Intestinal Microbiota to Study Microbe-Diet-Host Interactions in a Mouse Model

I. Nookaew, J. Nielsen, F. Bäckhed, 2019, Cell reports.

Reconstruction of Genome-Scale Active Metabolic Networks for 69 Human Cell Types and 16 Cancer Types Using INIT

Natapol Pornputtapong, Intawat Nookaew, Jens Nielsen, 2012, PLoS Comput. Biol..

Identification of BHLHE40 expression in peripheral blood mononuclear cells as a novel biomarker for diagnosis and prognosis of hepatocellular carcinoma

I. Nookaew, N. Chuaypen, P. Tangkijvanich, 2021, Scientific Reports.

Amplicon-Based, Next-Generation Sequencing Approaches to Characterize Single Nucleotide Polymorphisms of Orthohantavirus Species

I. Nookaew, C. Jonsson, Piroon Jenjaroenpun, 2020, Frontiers in Cellular and Infection Microbiology.

MEMOTE for standardized genome-scale metabolic model testing

Steffen Klamt, Anne Richelle, Hyun Uk Kim, 2020, Nature Biotechnology.

Comparative Analysis of PacBio and Oxford Nanopore Sequencing Technologies for Transcriptomic Landscape Identification of Penaeus monodon

I. Nookaew, Tanaporn Uengwetwanit, W. Pootakham, 2021, Life.

Optimization of high molecular weight DNA extraction methods in shrimp for a long-read sequencing platform

I. Nookaew, Tanaporn Uengwetwanit, W. Rungrassamee, 2020, PeerJ.

Systematic genome analysis of a novel arachidonic acid-producing strain uncovered unique metabolic traits in the production of acetyl-CoA-derived products in Mortierellale fungi.

I. Nookaew, C. Thammarongtham, Piroon Jenjaroenpun, 2020, Gene.

Metabolite profiles of brown planthopper-susceptible and resistant rice (Oryza sativa) varieties associated with infestation and mechanical stimuli

I. Nookaew, Umaporn Uawisetwathana, N. Karoonuthaisiri, 2022, Phytochemistry.

Integrated analysis of transcriptome and lipid profiling reveals the co-influences of inositol–choline and Snf1 in controlling lipid biosynthesis in yeast

Intawat Nookaew, Jens Nielsen, Jie Zhang, 2012, Molecular Genetics and Genomics.

Clostridium manihotivorum sp. nov., a novel mesophilic anaerobic bacterium that produces cassava pulp-degrading enzymes

I. Nookaew, S. Cheevadhanarak, Piroon Jenjaroenpun, 2020, PeerJ.

Dissecting Phenotype from Genotype with Clinical Isolates of SARS-CoV-2 First Wave Variants

Amanda P. Smith, I. Nookaew, C. Jonsson, 2023, Viruses.

Genome-scale metabolic reconstructions of Bifidobacterium adolescentis L2-32 and Faecalibacterium prausnitzii A2-165 and their interaction

Intawat Nookaew, Jens Nielsen, Saeed Shoaie, 2014, BMC Systems Biology.

Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016.

I. Nookaew, D. Ussery, Se-Ran Jun, 2019, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Mapping Condition-Dependent Regulation of Lipid Metabolism in Saccharomyces cerevisiae

Intawat Nookaew, Michael C. Jewett, Christopher T. Workman, 2013, G3: Genes, Genomes, Genetics.

Intawat Nookaew, Visanu Wanchai, Preecha Patumcharoenpol, 2017, BMC Bioinformatics.

Genomic Distance-based Rapid Uncovering of Microbial Population Structures (GRUMPS): a reference free genomic data cleaning methodology

I. Nookaew, Se-Ran Jun, M. Robeson, 2022, bioRxiv.

KITSUNE: A Tool for Identifying Empirically Optimal K-mer Length for Alignment-Free Phylogenomic Analysis

Natapol Pornputtapong, Intawat Nookaew, Preecha Patumcharoenpol, 2020, Frontiers in Bioengineering and Biotechnology.

Prospects for systems biology and modeling of the gut microbiome.

Intawat Nookaew, Jens Nielsen, Dina Petranovic, 2011, Trends in biotechnology.

Rapid Sequencing of Multiple RNA Viruses in Their Native Form

I. Nookaew, D. Ussery, C. Jonsson, 2018, bioRxiv.

The diversity and specificity of the extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic growth substrate

I. Nookaew, R. Hettich, M. Adams, 2018, Biotechnology for Biofuels.

Effective CRISPR interference of an endogenous gene via a single transgene in mice

I. Nookaew, C. O’Brien, M. Onal, 2019, Scientific Reports.

Metabolic profiling and compound-class identification reveal alterations in serum triglyceride levels in mice immunized with human vaccine adjuvant Alum.

I. Nookaew, J. Nielsen, T. Moritz, 2019, Journal of proteome research.

Transcriptional Regulation of Plant Biomass Degradation and Carbohydrate Utilization Genes in the Extreme Thermophile Caldicellulosiruptor bescii

I. Nookaew, D. Rodionov, M. Adams, 2021, mSystems.

Crosshatch nanofiber networks of tunable interfiber spacing induce plasticity in cell migration and cytoskeletal response

I. Nookaew, B. Behkam, A. Franco, 2019, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

Identifying Molecular Effects of Diet through Systems Biology: Influence of Herring Diet on Sterol Metabolism and Protein Turnover in Mice

I. Nookaew, J. Nielsen, A. Holmäng, 2010, PloS one.

The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism

Intawat Nookaew, Jens Nielsen, Michael C. Jewett, 2008, BMC Syst. Biol..

Genome Characterization of Oleaginous Aspergillus oryzae BCC7051: A Potential Fungal-Based Platform for Lipid Production

I. Nookaew, M. Land, C. Thammarongtham, 2017, Current Microbiology.

Analysis of genome-wide coexpression and coevolution of Aspergillus oryzae and Aspergillus niger.

I. Nookaew, J. Nielsen, W. Vongsangnak, 2010, Omics : a journal of integrative biology.

R-loop-forming Sequences Analysis in Thousands of Viral Genomes Identify A New Common Element in Herpesviruses

I. Nookaew, Piroon Jenjaroenpun, T. Wongsurawat, 2020, Scientific Reports.

Low-complexity microbiota in the duodenum of children with newly diagnosed ulcerative colitis

I. Nookaew, F. Sjöberg, I. Adlerberth, 2017, PloS one.

Genome-Based Comparison of Clostridioides difficile: Average Amino Acid Identity Analysis of Core Genomes

I. Nookaew, D. Ussery, Se-Ran Jun, 2018, Microbial Ecology.

Safety Assessment of a Nham Starter Culture Lactobacillus plantarum BCC9546 via Whole-genome Analysis

I. Nookaew, N. Chokesajjawatee, C. Thammarongtham, 2020, Scientific Reports.

Estrogens decrease osteoclast number by attenuating mitochondria oxidative phosphorylation and ATP production in early osteoclast precursors

I. Nookaew, R. de Cabo, M. Almeida, 2020, Scientific Reports.

Circular DNA in the human germline and its association with recombination.

I. Nookaew, B. Regenberg, T. Wongsurawat, 2021, Molecular cell.

Detection and discrimination of DNA adducts differing in size, regiochemistry and functional group by nanopore sequencing.

I. Nookaew, T. Wongsurawat, Yinsheng Wang, 2020, Chemical research in toxicology.

Comparative Analysis of Two Helicobacter pylori Strains using Genomics and Mass Spectrometry-Based Proteomics

I. Nookaew, C. Sihlbom, A. Karlsson, 2016, Front. Microbiol..

Sample storage conditions induce post-collection biases in microbiome profiles

I. Nookaew, Se-Ran Jun, R. Griffin, 2018, BMC Microbiology.

Integrating mRNA and Protein Sequencing Enables the Detection and Quantitative Profiling of Natural Protein Sequence Variants of Populus trichocarpa.

I. Nookaew, R. Hettich, G. Tuskan, 2015, Journal of proteome research.

Genome-wide Cas9 binding specificity in Saccharomyces cerevisiae

Sean D. Taverna, I. Nookaew, A. Tackett, 2020, PeerJ.

PanViz: interactive visualization of the structure of functionally annotated pangenomes

Intawat Nookaew, David Wayne Ussery, Thomas Lin Pedersen, 2016, Bioinform..

Transcriptome analyses reveal the synergistic effects of feeding and eyestalk ablation on ovarian maturation in black tiger shrimp

I. Nookaew, W. Rungrassamee, W. Pootakham, 2020, Scientific Reports.

Is amplification bias consequential in transposon sequencing (TnSeq) assays? A case study with a Staphylococcus aureus TnSeq library subjected to PCR-based and amplification-free enrichment methods

I. Nookaew, D. Ussery, A. Richardson, 2021, Microbial genomics.

Cell-Free DNA Analysis by Whole-Exome Sequencing for Hepatocellular Carcinoma: A Pilot Study in Thailand

I. Nookaew, N. Chuaypen, P. Tangkijvanich, 2021, Cancers.

Proteome- and Transcriptome-Driven Reconstruction of the Human Myocyte Metabolic Network and Its Use for Identification of Markers for Diabetes.

Intawat Nookaew, Jens Nielsen, Caroline Kampf, 2016, Cell reports.

Proteome- and transcriptome-driven reconstruction of the human myocyte metabolic network and its use for identification of markers for diabetes.

Intawat Nookaew, Jens Nielsen, Caroline Kampf, 2015, Cell reports.

The Omega-3 Fatty Acids EPA and DHA, as a Part of a Murine High-Fat Diet, Reduced Lipid Accumulation in Brown and White Adipose Tissues

I. Nookaew, A. Ross, N. Scheers, 2019, International journal of molecular sciences.

Splenic Immune Response Is Down-Regulated in C57BL/6J Mice Fed Eicosapentaenoic Acid and Docosahexaenoic Acid Enriched High Fat Diet

I. Nookaew, Otto Savolainen, A. Ross, 2017, Nutrients.

Distinctive molecular signature and activated signaling pathways in aortic smooth muscle cells of patients with myocardial infarction.

I. Nookaew, V. Kuznetsov, S. Sze, 2018, Atherosclerosis.

Transcriptome alterations of vascular smooth muscle cells in aortic wall of myocardial infarction patients

I. Nookaew, V. Kuznetsov, S. Sze, 2018, Data in brief.

Human metabolic atlas: an online resource for human metabolism

Natapol Pornputtapong, Intawat Nookaew, Jens Nielsen, 2015, Database J. Biol. Databases Curation.

Memote: A community driven effort towards a standardized genome-scale metabolic model test suite

Steffen Klamt, Anne Richelle, Hyun Uk Kim, 2018, bioRxiv.

MEMOTE for standardized genome-scale metabolic model testing

Ronan M. T. Fleming, Adam M. Feist, Zachary A. King, 2020, Nature Biotechnology.

ProdMX: Rapid query and analysis of protein functional domain based on compressed sparse matrices

Intawat Nookaew, Visanu Wanchai, David W. Ussery, 2020, Computational and structural biotechnology journal.

Physiological characterization of recombinant Saccharomyces cerevisiae expressing the Aspergillus nidulans phosphoketolase pathway: validation of activity through 13C-based metabolic flux analysis

I. Nookaew, J. Nielsen, V. Siewers, 2012, Applied Microbiology and Biotechnology.

Neutralization of oxidized phospholipids attenuates age‐associated bone loss in mice

I. Nookaew, J. Witztum, M. Almeida, 2021, Aging cell.

A maternal diet of fatty fish reduces body fat of offspring compared with a maternal diet of beef and a post‐weaning diet of fish improves insulin sensitivity and lipid profile in adult C57BL/6 male mice

I. Nookaew, J. Nielsen, A. Holmäng, 2013, Acta physiologica.

Site-specific programming of the host epithelial transcriptome by the gut microbiota

I. Nookaew, F. Bäckhed, F. Sommer, 2015, Genome Biology.

1 A chromosome-level assembly of the black tiger shrimp ( Penaeus monodon ) genome facilitates 1 the identification of novel growth-associated genes 2 3

I. Nookaew, F. Tangy, P. Schaap, 2020 .

Metabolomics and Integrative Omics for the Development of Thai Traditional Medicine

I. Nookaew, S. Khoomrung, P. Akarasereenont, 2017, Front. Pharmacol..

Identification of flux regulation coefficients from elementary flux modes: A systems biology tool for analysis of metabolic networks

Intawat Nookaew, Sakarindr Bhumiratana, Asawin Meechai, 2007, Biotechnology and bioengineering.

Enterotoxigenic Escherichia coli display a distinct growth phase before entry into stationary phase with shifts in tryptophan- fucose- and putrescine metabolism and degradation of neurotransmitter precursors

I. Nookaew, B. Zhu, D. Globisch, 2021, bioRxiv.

I. Nookaew, D. Ussery, Se-Ran Jun, 2017, BMC Bioinformatics.

Exploring complex cellular phenotypes and model-guided strain design with a novel genome-scale metabolic model of Clostridium thermocellum DSM 1313 implementing an adjustable cellulosome

Intawat Nookaew, Cong T. Trinh, Sanjeev Dahal, 2016, Biotechnology for Biofuels.

Notch3 signaling between myeloma cells and osteocytes in the tumor niche promotes tumor growth and bone destruction

I. Nookaew, G. Roodman, N. Kurihara, 2022, Neoplasia.

Integrated omics analyses reveal the details of metabolic adaptation of Clostridium thermocellum to lignocellulose-derived growth inhibitors released during the deconstruction of switchgrass

Intawat Nookaew, Jonathan R. Mielenz, Robert L. Hettich, 2017, Biotechnology for Biofuels.

Genome-Based Comparison of Clostridioides difficile: Average Amino Acid Identity Analysis of Core Genomes

I. Nookaew, D. Ussery, Se-Ran Jun, 2018, Microbial Ecology.

Decaffeinated Green Tea Extract Does Not Elicit Hepatotoxic Effects and Modulates the Gut Microbiome in Lean B6C3F1 Mice

Mitchell R. McGill, I. Nookaew, D. Ussery, 2019, Nutrients.

Dietary Polyunsaturated Fatty Acids Promote Neutrophil Accumulation in the Spleen by Altering Chemotaxis and Delaying Cell Death

I. Nookaew, J. Jansson, A. Karlsson, 2019, Infection and Immunity.

Improvement of Gut Diversity and Composition after Direct-Acting Antivirals in HCV-Infected Patients with or without HIV Coinfection.

I. Nookaew, S. Cheevadhanarak, N. Chuaypen, 2021, The Journal of infectious diseases.

The bile salt glycocholate induces global changes in gene and protein expression and activates virulence in enterotoxigenic Escherichia coli

I. Nookaew, B. Zhu, Xue Xiao, 2019, Scientific Reports.

Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling

Intawat Nookaew, Jens Nielsen, Sergio Bordel, 2013, BMC Systems Biology.

The Interaction between 30b-5p miRNA and MBNL1 mRNA is Involved in Vascular Smooth Muscle Cell Differentiation in Patients with Coronary Atherosclerosis

I. Nookaew, R. Dorajoo, T. Wongsurawat, 2019, International journal of molecular sciences.

Growth and dormancy control of myeloma cells by mesenchymal stem cells.

I. Nookaew, M. Zangari, J. Epstein, 2023, Leukemia research.

Integrated analysis, transcriptome-lipidome, reveals the effects of INO-level (INO2 and INO4) on lipid metabolism in yeast

Intawat Nookaew, Jens Nielsen, Pramote Chumnanpuen, 2013, BMC Systems Biology.

Two SARS-CoV-2 Genome Sequences of Isolates from Rural U.S. Patients Harboring the D614G Mutation, Obtained Using Nanopore Sequencing

I. Nookaew, D. Ussery, F. Prior, 2020, Microbiology Resource Announcements.

dBBQs: dataBase of Bacterial Quality scores

I. Nookaew, D. Ussery, P. Patumcharoenpol, 2017, bioRxiv.

A dedicated database system for handling multi-level data in systems biology

Natapol Pornputtapong, Kwanjeera Wanichthanarak, Avlant Nilsson, 2014, Source Code for Biology and Medicine.

BioMet Toolbox 2.0: genome-wide analysis of metabolism and omics data

Avlant Nilsson, Intawat Nookaew, Jens Nielsen, 2014, Nucleic Acids Res..

BioMet Toolbox: genome-wide analysis of metabolism

Intawat Nookaew, Jens Nielsen, Marija Cvijovic, 2010, Nucleic Acids Res..

Genome-scale metabolic models of Saccharomyces cerevisiae.

Intawat Nookaew, Jens Nielsen, Sakarindr Bhumiratana, 2011, Methods in molecular biology.

FANTOM: Functional and taxonomic analysis of metagenomes

Intawat Nookaew, Jens Nielsen, Kemal Sanli, 2013, BMC Bioinformatics.

Characteristics and Network Influence of Providers Involved in the Treatment of Patients with Chronic Back, Neck or Joint Pain in Arkansas.

Jonathan P. Bona, I. Nookaew, B. Martin, 2021, The journal of pain.

Assessment of genome annotation using gene function similarity within the gene neighborhood

I. Nookaew, A. Gorin, Se-Ran Jun, 2017, BMC Bioinformatics.

Reversal of the diabetic bone signature with anabolic therapies in mice

I. Nookaew, T. Bellido, Shenyang Li, 2023, Bone research.

yStreX: yeast stress expression database

Kwanjeera Wanichthanarak, Intawat Nookaew, Dina Petranovic, 2014, Database J. Biol. Databases Curation.

Understanding the interactions between bacteria in the human gut through metabolic modeling

Fredrik H. Karlsson, I. Nookaew, A. Mardinoğlu, 2013, Scientific Reports.

Long-term benefit of DAAs on gut dysbiosis and microbial translocation in HCV-infected patients with and without HIV coinfection.

I. Nookaew, N. Chuaypen, P. Tangkijvanich, 2023, Scientific reports.

Diversity of Pseudomonas Genomes, Including Populus-Associated Isolates, as Revealed by Comparative Genome Analysis

I. Nookaew, D. Ussery, C. Schadt, 2015, Applied and Environmental Microbiology.

Fast and accurate preparation fatty acid methyl esters by microwave-assisted derivatization in the yeast Saccharomyces cerevisiae

Intawat Nookaew, Jens Nielsen, Pramote Chumnanpuen, 2012, Applied Microbiology and Biotechnology.

The NAD salvage pathway in mesenchymal cells is indispensable for skeletal development in mice

I. Nookaew, C. O’Brien, R. Porter, 2023, Nature communications.

Native RNA or cDNA Sequencing for Transcriptomic Analysis: A Case Study on Saccharomyces cerevisiae

I. Nookaew, T. Wongsurawat, Visanu Wanchai, 2022, Frontiers in Bioengineering and Biotechnology.

CReSIL: accurate identification of extrachromosomal circular DNA from long-read sequences

I. Nookaew, B. Regenberg, Gerard Arrey, 2022, Briefings Bioinform..

Exploiting nanopore sequencing for characterization and grading of IDH‐mutant gliomas

I. Nookaew, T. Wongsurawat, S. Sathornsumetee, 2023, Brain pathology.

Voluntary Running Suppresses Tumor Growth through Epinephrine- and IL-6-Dependent NK Cell Mobilization and Redistribution.

I. Nookaew, J. Becker, J. Gehl, 2016, Cell metabolism.

Glycosaminoglycan Profiling in Patients' Plasma and Urine Predicts the Occurrence of Metastatic Clear Cell Renal Cell Carcinoma.

I. Nookaew, F. Gatto, J. Nielsen, 2016, Cell reports.

The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism

I. Nookaew, J. Nielsen, S. Cheevadhanarak, 2008, BMC Systems Biology.

The genome-scale metabolic model iIN 800 of Saccharomyces cerevisiae and its validation : a scaffold to query lipid metabolism

I. Nookaew, S. Cheevadhanarak, S. Bhumiratana, 2008 .

Diabetes-associated alterations in the cecal microbiome and metabolome are independent of diet or environment in the UC Davis Type 2 Diabetes Mellitus Rat model.

I. Nookaew, K. Shankar, P. Havel, 2018, American journal of physiology. Endocrinology and metabolism.

I. Nookaew, A. Holmäng, S. Khoomrung, 2013, Acta physiologica.

High NEK2 expression in myeloid progenitors suppresses T cell immunity in multiple myeloma

I. Nookaew, P. L. Bergsagel, Hongwei Xu, 2023, Cell reports. Medicine.

Integrating mRNA and Protein Sequencing Enables the Detection and Quantitative Profiling of Natural Protein Sequence Variants of Populus trichocarpa.

I. Nookaew, R. Hettich, G. Tuskan, 2015, Journal of proteome research.

Physiological characterization of recombinant Saccharomyces cerevisiae expressing the Aspergillus nidulans phosphoketolase pathway: validation of activity through 13C-based metabolic flux analysis

I. Nookaew, J. Nielsen, V. Siewers, 2012, Applied Microbiology and Biotechnology.

Direct Sequencing of RNA and RNA Modification Identification Using Nanopore.

I. Nookaew, T. Wongsurawat, P. Jenjaroenpun, 2022, Methods in molecular biology.

Complete Genome Sequences of Four Isolates of Vancomycin-Resistant Enterococcus faecium with the vanA Gene and Two Daptomycin Resistance Mutations, Obtained from Two Inpatients with Prolonged Bacteremia

I. Nookaew, D. Ussery, Se-Ran Jun, 2020, Microbiology Resource Announcements.

Reduced osteoprotegerin expression by osteocytes may contribute to rebound resorption after denosumab discontinuation

I. Nookaew, E. Ambrogini, J. Goellner, 2023, JCI insight.

A Closer Look at Bacteroides: Phylogenetic Relationship and Genomic Implications of a Life in the Human Gut

Fredrik H. Karlsson, I. Nookaew, J. Nielsen, 2011, Microbial Ecology.

A framework for defining mesenchymal cell types associated with murine periosteal and endosteal bone

I. Nookaew, Visanu Wanchai, J. Xiong, 2023, bioRxiv.