K. Kurokawa

发表

P. Bork, M. Arumugam, Jun Wang, 2011, Nature.

Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae

Masahira Hattori, Yoshio Iijima, Teruo Yasunaga, 2003, The Lancet.

Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12.

M. Hattori, Tetsuya Hayashi, K. Kurokawa, 2001, DNA research : an international journal for rapid publication of reports on genes and genomes.

Single-Cell Genomics of Novel Actinobacteria With the Wood–Ljungdahl Pathway Discovered in a Serpentinizing System

K. Kurokawa, K. Nealson, E. Boyd, 2020, Frontiers in Microbiology.

Implication of a new function of human tDNAs in chromatin organization

K. Kurokawa, T. Ikemura, Y. Iwasaki, 2020, Scientific Reports.

Comparative Metagenomics Revealed Commonly Enriched Gene Sets in Human Gut Microbiomes

Hiroshi Mori, Yoshiyuki Sakaki, Toshihisa Takagi, 2007, DNA research : an international journal for rapid publication of reports on genes and genomes.

Enterotypes of the human gut microbiome

Peer Bork, Søren Brunak, Daniel R. Mende, 2011, Nature.

The Whole-genome Sequencing of the Obligate Intracellular Bacterium Orientia tsutsugamushi Revealed Massive Gene Amplification During Reductive Genome Evolution

M. Hattori, Tetsuya Hayashi, K. Kurokawa, 2008, DNA research : an international journal for rapid publication of reports on genes and genomes.

Analysis of invariant sequences in 266 complete genomes.

K. Kurokawa, T. Yasunaga, Naohisa Goto, 2007, Gene.

Design and Experimental Application of a Novel Non-Degenerate Universal Primer Set that Amplifies Prokaryotic 16S rRNA Genes with a Low Possibility to Amplify Eukaryotic rRNA Genes

Hiroshi Mori, Yuji Nagata, Atsushi Toyoda, 2013, DNA research : an international journal for rapid publication of reports on genes and genomes.

Genome sequence of an M3 strain of Streptococcus pyogenes reveals a large-scale genomic rearrangement in invasive strains and new insights into phage evolution.

Masahira Hattori, Teruo Yasunaga, Ichiro Nakagawa, 2003, Genome research.

Reduction of Short-Chain Fatty Acid-Producing Gut Microbiota Leads to Transition from Rapid-Eye-Movement Sleep Behavior Disorder to Parkinson’s Disease

K. Kurokawa, T. Shimamura, K. Ohno, 2020, bioRxiv.

Short-Chain Fatty Acid-Producing Gut Microbiota Is Decreased in Parkinson’s Disease but Not in Rapid-Eye-Movement Sleep Behavior Disorder

K. Kurokawa, T. Shimamura, K. Ohno, 2020, mSystems.

CONSERV: A Tool for finding Exact Matching Conserved Sequences in Biological Sequences

K. Kurokawa, T. Yasunaga, Naohisa Goto, 2000 .

Cell lysis directed by sigmaE in early stationary phase and effect of induction of the rpoE gene on global gene expression in Escherichia coli.

K. Kurokawa, H. Mori, T. Oshima, 2005, Microbiology.

[Special Issue: Fact Databases and Freewares] tRNAfinder: A Software System To Find All tRNA Genes in the DNA Sequence Based on the Cloverleaf Secondary Structure

K. Kurokawa, M. Kinouchi, 2006 .

Comprehensive in virio structure probing analysis of the influenza A virus identifies a functional RNA structure involved in replication and segment interactions

Tetsuya Hayashi, K. Kurokawa, Yutaka Suzuki, 2020, bioRxiv.

Local structural changes of the influenza A virus ribonucleoprotein complex by single mutations in the specific residues involved in efficient genome packaging.

Tetsuya Hayashi, K. Kurokawa, H. Shigematsu, 2019, Virology.

MicroArray Analysis of Escherichia coli K-12 : An in silico Approach

K. Kurokawa, S. Kanaya, H. Mori, 2005 .

Rapid-Eye-Movement Sleep Behavior Disorder Exhibits Similar but Distinct Gut Dysbiosis Compared to Parkinson’s Disease

K. Kurokawa, T. Shimamura, K. Ohno, 2020 .

RNA-binding motifs of hnRNP K are critical for induction of antibody diversification by activation-induced cytidine deaminase

K. Kurokawa, T. Honjo, Maki Kobayashi, 2020, Proceedings of the National Academy of Sciences.

Updating the Vibrio clades defined by multilocus sequence phylogeny: proposal of eight new clades, and the description of Vibrio tritonius sp. nov.

Tetsuya Hayashi, K. Kurokawa, F. Thompson, 2013, Front. Microbiol..

Comparative genomic analyses of Streptococcus mutans provide insights into chromosomal shuffling and species-specific content

M. Hattori, K. Kurokawa, K. Nakai, 2009, BMC Genomics.

The entire organization of transcription units on the Bacillus subtilis genome

K. Kurokawa, S. Kanaya, N. Ogasawara, 2007, BMC Genomics.

De novo virus inference and host prediction from metagenome using CRISPR spacers

K. Kurokawa, N. Parrish, I. Inoue, 2020, bioRxiv.

Minimal Genomes: How Many Genes Does a Cell Require To Be Viable

K. Kurokawa, T. Oshima, T. Baba, 2020, Journal of Geography (Chigaku Zasshi).

Essential cellular modules for the proliferation of the primitive cell

K. Kurokawa, T. Oshima, T. Baba, 2016, Geoscience Frontiers.

Genome Comparison and Phylogenetic Analysis of Orientia tsutsugamushi Strains

Tetsuya Hayashi, K. Kurokawa, K. Nakayama, 2010, DNA research : an international journal for rapid publication of reports on genes and genomes.

Aberrant mucosal immunoreaction to tonsillar microbiota in immunoglobulin A nephropathy

K. Kurokawa, S. Goto, I. Narita, 2020, Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association.

Ecophysiology of Thioploca ingrica as revealed by the complete genome sequence supplemented with proteomic evidence

Tetsuya Hayashi, K. Kurokawa, Y. Ogura, 2014, The ISME Journal.

Vibrionaceae, a versatile bacterial family with evolutionarily conserved variability.

K. Kurokawa, T. Iida, R. Dryselius, 2007, Research in microbiology.

A novel small regulatory RNA enhances cell motility in enterohemorrhagic Escherichia coli.

Tetsuya Hayashi, K. Kurokawa, S. Iyoda, 2014, The Journal of general and applied microbiology.

Whole Genome PCR Scanning Analyzer and Its Application to Bacterial Genome

Tetsuya Hayashi, K. Kurokawa, M. Ohnishi, 2002 .

Abundance and distribution of bacteria carrying sltII gene in natural river water

K. Kurokawa, M. Nasu, M. Ogawa, 1999, Letters in applied microbiology.

Complete Genome Sequence of a Phenanthrene Degrader, Mycobacterium sp. Strain EPa45 (NBRC 110737), Isolated from a Phenanthrene-Degrading Consortium

M. Hattori, K. Kurokawa, A. Fujiyama, 2015, Genome Announcements.

Complete DNA Sequence and Analysis of the Transferable Multiple-Drug Resistance Plasmids (R Plasmids) from Photobacterium damselae subsp. piscicida Isolates Collected in Japan and the United States

Mudjekeewis D. Santos, K. Kurokawa, I. Hirono, 2007, Antimicrobial Agents and Chemotherapy.

Genomic Structure of the Cyanobacterium Synechocystis sp. PCC 6803 Strain GT-S

Naobumi V. Sasaki, M. Ikeuchi, K. Kurokawa, 2011, DNA research : an international journal for rapid publication of reports on genes and genomes.

Origin of methane in serpentinite-hosted hydrothermal systems: The CH4–H2–H2O hydrogen isotope systematics of the Hakuba Happo hot spring

K. Kurokawa, Keita Yamada, N. Yoshida, 2014 .

Hadean Primordial Metabolism Pathway Driven by a Nuclear Geyser

K. Kurokawa, T. Oshima, Y. Kamagata, 2020, Journal of Geography (Chigaku Zasshi).

Arsenate and microbial dynamics in different phosphorus regimes of the subtropical Pacific Ocean

Tetsuya Hayashi, K. Kurokawa, H. Saito, 2019, Progress in Oceanography.

H-NS Facilitates Sequence Diversification of Horizontally Transferred DNAs during Their Integration in Host Chromosomes

K. Kurokawa, Yutaka Suzuki, S. Ishikawa, 2016, PLoS genetics.

Complete Genome Sequence of a Propionibacterium acnes Isolate from a Sarcoidosis Patient

Tetsuya Hayashi, K. Kurokawa, Y. Eishi, 2013, Genome Announcements.

Complete Genome Sequence and Comparative Genome Analysis of Enteropathogenic Escherichia coli O127:H6 Strain E2348/69

Tetsuya Hayashi, K. Kurokawa, M. Quail, 2008, Journal of bacteriology.

Phylogenomics and Morphology of Extinct Paleognaths Reveal the Origin and Evolution of the Ratites

K. Kurokawa, H. Kishino, M. Hasegawa, 2017, Current Biology.

Chromosome of the enterohemorrhagic Escherichia coli O157:H7; comparative analysis with K-12 MG1655 revealed the acquisition of a large amount of foreign DNAs.

K. Kurokawa, S. Kuhara, K. Makino, 1999, DNA research : an international journal for rapid publication of reports on genes and genomes.

DomSign: a top-down annotation pipeline to enlarge enzyme space in the protein universe

Takuji Yamada, K. Kurokawa, Tianming Wang, 2015, BMC Bioinformatics.

Genome Evolution and Plasticity of Serratia marcescens, an Important Multidrug-Resistant Nosocomial Pathogen

Julian Parkhill, Masahira Hattori, Ken Kurokawa, 2014, Genome biology and evolution.

Complete Genome Sequence of the Bacterium Porphyromonas gingivalis TDC60, Which Causes Periodontal Disease

M. Hattori, K. Kurokawa, Y. Abiko, 2011, Journal of bacteriology.

Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation

M. Ikeuchi, Takuji Yamada, K. Kurokawa, 2014, Nature Communications.

Key bacterial taxa and metabolic pathways affecting gut short-chain fatty acid profiles in early life

K. Kurokawa, Hiroshi Mori, T. Matsuki, 2021, The ISME Journal.

Novel Conjugative Transferable Multiple Drug Resistance Plasmid pAQU1 from Photobacterium damselae subsp. damselae Isolated from Marine Aquaculture Environment

K. Kurokawa, F. Maruyama, M. Masuda, 2012, Microbes and environments.

Genome Sequences of Three Koi Herpesvirus Isolates Representing the Expanding Distribution of an Emerging Disease Threatening Koi and Common Carp Worldwide

K. Kurokawa, A. Eldar, A. Davison, 2007, Journal of Virology.

The Relationship Between Microbial Community Structures and Environmental Parameters Revealed by Metagenomic Analysis of Hot Spring Water in the Kirishima Area, Japan

K. Kurokawa, Y. Hongoh, Hiroshi Mori, 2018, Front. Bioeng. Biotechnol..

Identification of PGC7, a new gene expressed specifically in preimplantation embryos and germ cells

K. Kurokawa, A. Ryo, T. Yasunaga, 2002, Mechanisms of Development.

R-Spondin1 expands Paneth cells and prevents dysbiosis induced by graft-versus-host disease

Tetsuya Hayashi, K. Kurokawa, T. Kondo, 2017, The Journal of experimental medicine.

Molecular basis of clonal expansion of hematopoiesis in 2 patients with paroxysmal nocturnal hemoglobinuria (PNH).

Ken Kurokawa, Maki Kuwayama, Yuichi Endo, 2006, Blood.

The genome sequence of Clostridium botulinum type C neurotoxin-converting phage and the molecular mechanisms of unstable lysogeny.

M. Hattori, Tetsuya Hayashi, K. Kurokawa, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Plasmodium falciparum Phospholipase C Hydrolyzing Sphingomyelin and Lysocholinephospholipids Is a Possible Target for Malaria Chemotherapy

K. Kurokawa, T. Mitamura, T. Horii, 2002, The Journal of experimental medicine.

Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer

Tomoyoshi Soga, Sayaka Mizutani, Atsushi Toyoda, 2019, Nature Medicine.

Identification of a gene cluster responsible for hydrogen evolution in Vibrio tritonius strain AM2 with transcriptional analyses

Tetsuya Hayashi, K. Kurokawa, T. Sawabe, 2015 .

CRISPR Inhibition of Prophage Acquisition in Streptococcus pyogenes

K. Kurokawa, Chihiro Aikawa, I. Nakagawa, 2011, PloS one.

VITCOMIC: visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences

Hiroshi Mori, Ken Kurokawa, Fumito Maruyama, 2010, BMC Bioinformatics.

A key genetic factor for fucosyllactose utilization affects infant gut microbiota development

Takuji Yamada, K. Kurokawa, H. Kodama, 2016, Nature Communications.

The Lifestyle of the Segmented Filamentous Bacterium: A Non-Culturable Gut-Associated Immunostimulating Microbe Inferred by Whole-Genome Sequencing

M. Hattori, Tetsuya Hayashi, K. Kurokawa, 2011, DNA research : an international journal for rapid publication of reports on genes and genomes.

A New Multiple Comparison Method Using Resampling Technique for Medical, Pharmaceutical, and Chemical Data

Teruo Yasunaga, Tatsuya Takagi, Kousuke Okamoto, 2003 .

Meta‐Analysis of Gut Dysbiosis in Parkinson's Disease

K. Kurokawa, T. Shimamura, K. Ohno, 2020, Movement disorders : official journal of the Movement Disorder Society.

Differently localized lysophosphatidic acid acyltransferases crucial for triacylglycerol biosynthesis in the oleaginous alga Nannochloropsis

K. Kurokawa, H. Ohta, Hiroshi Mori, 2017, The Plant journal : for cell and molecular biology.

Analysis of the complete plastid genome of the unicellular red alga Porphyridium purpureum

K. Kurokawa, S. Tabata, H. Ohta, 2014, Journal of Plant Research.

High-resolution genetic analysis of the requirements for horizontal transmission of the ESBL plasmid from Escherichia coli O104:H4

K. Kurokawa, M. Waldor, Y. Yamaichi, 2014, Nucleic acids research.

Intestinal IgA as a modulator of the gut microbiota

K. Kurokawa, R. Shinkura, Hiroshi Mori, 2017, Gut microbes.

High-affinity monoclonal IgA regulates gut microbiota and prevents colitis in mice

Takuji Yamada, K. Kurokawa, R. Shinkura, 2016, Nature Microbiology.

High-affinity monoclonal IgA regulates gut microbiota and prevents 1 colitis in mice 2 3

Tamotsu, Takuji Yamada, K. Kurokawa, 2016 .

FuncTree: Functional Analysis and Visualization for Large-Scale Omics Data

Hiroshi Mori, Takuji Yamada, Ken Kurokawa, 2015, PloS one.

Short-Chain Fatty Acid-Producing Gut Microbiota Is Decreased in Parkinsonâ•Žs Disease but Not in Rapid-Eye-Movement Sleep Behavior Disorder

K. Kurokawa, T. Shimamura, J. Ueyama, 2020 .

Quantification of hydrogen production by intestinal bacteria that are specifically dysregulated in Parkinson's disease

K. Kurokawa, K. Ohno, Hiroshi Mori, 2018, PloS one.

Comprehensive discovery of CRISPR-targeted terminally redundant sequences in the human gut metagenome: Viruses, plasmids, and more

Hiroshi Mori, Ituro Inoue, Ken Kurokawa, 2021, PLoS Comput. Biol..

Minor taxa in human skin microbiome contribute to the personal identification

Takuji Yamada, K. Kurokawa, Hiroshi Mori, 2018, PloS one.

Escherichia coli histone-like protein H-NS preferentially binds to horizontally acquired DNA in association with RNA polymerase.

Naotake Ogasawara, Taku Oshima, Ken Kurokawa, 2006, DNA research : an international journal for rapid publication of reports on genes and genomes.

Blastochloris tepida, sp. nov., a thermophilic species of the bacteriochlorophyll b-containing genus Blastochloris

K. Kurokawa, M. Madigan, A. Toyoda, 2019, Archives of Microbiology.

Title Time-series metagenomic analysis reveals robustness of soilmicrobiome against chemical disturbance

M. Hattori, K. Kurokawa, A. Fujiyama, 2018 .

Time-series metagenomic analysis reveals robustness of soil microbiome against chemical disturbance

Hiroshi Mori, Yuji Nagata, Masahira Hattori, 2015, DNA research : an international journal for rapid publication of reports on genes and genomes.

Enterotypes of thehumangutmicrobiome

P. Bork, M. Arumugam, Jun Wang, 2011 .

Comprehensive in virio structure probing analysis of the influenza A virus identifies a functional RNA structure involved in replication and segment interactions

Tetsuya Hayashi, K. Kurokawa, Yutaka Suzuki, 2020, bioRxiv.

Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli

Masahira Hattori, Ken Kurokawa, Toshio Kodama, 2009, Proceedings of the National Academy of Sciences.

Diversification of Escherichia coli genomes: are bacteriophages the major contributors?

K. Kurokawa, M. Ohnishi, T. Hayashi, 2001, Trends in microbiology.

Comparative Genomics: Genome Configuration and the Driving Forces in the Evolution of Vibrios

K. Kurokawa, T. Iida, 2006 .

Distinct genomic sequence of the CNR/Pcdhα genes in chicken

K. Kurokawa, T. Yagi, S. Hamada, 2004 .

Random sequencing of genomic DNA of Photobacterium damselae subsp. piscicida

K. Kurokawa, H. Naka, I. Hirono, 2005, Fisheries Science.

Complete Genome Sequence of the Wild-Type Commensal Escherichia coli Strain SE15, Belonging to Phylogenetic Group B2

M. Hattori, Tetsuya Hayashi, K. Kurokawa, 2009, Journal of bacteriology.

Comparative Genomic Analysis Using Microarray Demonstrates a Strong Correlation between the Presence of the 80-Kilobase Pathogenicity Island and Pathogenicity in Kanagawa Phenomenon-Positive Vibrio parahaemolyticus Strains

Tetsuya Hayashi, K. Kurokawa, S. Kuhara, 2008, Infection and Immunity.

Distribution of Stable DnaA-Binding Sites on the Bacillus Subtilis Genome Detected using a Modified ChIP-chip Method

Hajime Okumura, Yoshikazu Kawai, Naotake Ogasawara, 2007, DNA research : an international journal for rapid publication of reports on genes and genomes.

Establishment of a multi-species biofilm model and metatranscriptomic analysis of biofilm and planktonic cell communities

K. Kurokawa, Nozomi Yamamoto, Hiroshi Mori, 2016, Applied Microbiology and Biotechnology.

A Possible Intrinsic Mechanism for Clonal Expansion of PNH Abnormal Cells

K. Kurokawa, Y. Kanakura, T. Kinoshita, 2003 .

Genome-Organizing Factors Top2 and Hmo1 Prevent Chromosome Fragility at Sites of S phase Transcription

K. Kurokawa, K. Shirahige, G. Natoli, 2009, Cell.

Systematic Identification and Sequence Analysis of the Genomic Islands of the Enteropathogenic Escherichia coli Strain B171-8 by the Combined Use of Whole-Genome PCR Scanning and Fosmid Mapping

M. Hattori, Tetsuya Hayashi, K. Kurokawa, 2008, Journal of bacteriology.

Complete Genome Sequence of the Serotype k Streptococcus mutans Strain LJ23

M. Hattori, K. Kurokawa, Y. Eishi, 2012, Journal of bacteriology.

Unique metabolic strategies in Hadean analogues reveal hints for primordial physiology

K. Kurokawa, A. Toyoda, Y. Kamagata, 2021, bioRxiv.

Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655.

K. Kurokawa, S. Kuhara, K. Yokoyama, 2000, Systematic and applied microbiology.

Application of revised version of neural independent component analysis to classification problems of confiscated methamphetamine.

Tatsuya Takagi, Kousuke Okamoto, Teruo Yasunaga, 2004, Chemical & pharmaceutical bulletin.

Latent environment allocation of microbial community data

Hiroshi Mori, Shinya Suzuki, Koichi Higashi, 2018, PLoS Comput. Biol..

Extensive genomic diversity and selective conservation of virulence-determinants in enterohemorrhagic Escherichia coli strains of O157 and non-O157 serotypes

Tetsuya Hayashi, K. Kurokawa, S. Kuhara, 2007, Genome Biology.

Genomic diversity of enterohemorrhagic Escherichia coli O157 revealed by whole genome PCR scanning

Ken Kurokawa, Tetsuya Hayashi, Tetsuya Hayashi, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Comprehensive microbiome analysis of tonsillar crypts in IgA nephropathy

Takuji Yamada, K. Kurokawa, Yusuke Suzuki, 2016, Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association.

Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak.

K. Kurokawa, C. Sasakawa, K. Yokoyama, 2000, Gene.

Allochromatium tepidum, sp. nov., a hot spring species of purple sulfur bacteria

D. M. Ward, K. Kurokawa, M. Madigan, 2022, Archives of Microbiology.

[Direct in situ PCR method for the detection of verotoxin-producing Escherichia coli].

K. Kurokawa, M. Nasu, K. Tani, 1997, Nihon saikingaku zasshi. Japanese journal of bacteriology.

VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing

Hiroshi Mori, Takuji Yamada, Ken Kurokawa, 2018, BMC Systems Biology.

Differential Binding Profiles of StpA in Wild-Type and hns Mutant Cells: a Comparative Analysis of Cooperative Partners by Chromatin Immunoprecipitation-Microarray Analysis

Naotake Ogasawara, Taku Oshima, Ken Kurokawa, 2009, Journal of bacteriology.

a comparative analysis of cooperative partners by ChIP-chip analysis

K. Kurokawa, S. Ishikawa, N. Ogasawara, 2009 .

Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak.

K. Kurokawa, C. Sasakawa, K. Yokoyama, 1999, Genes & genetic systems.

Enterotypes of the human gut microbiome

Peer Bork, Daniel R. Mende, David Torrents, 2011, Nature.

Calculationof Total Coloniesand ColiformGroup Counts, and Detection of Enteric and Related Bacteria from Drinking Water in Indonesia

K. Kurokawa, M. Sugiyama, K. Fujita, 1985 .

Sequencing and analysis of the complete organellar genomes of Parmales, a closely related group to Bacillariophyta (diatoms)

K. Kurokawa, S. Tabata, H. Ohta, 2016, Current Genetics.

Complexity of the genomic diversity in enterohemorrhagic Escherichia coli O157 revealed by the combinational use of the O157 Sakai OligoDNA microarray and the Whole Genome PCR scanning.

Tetsuya Hayashi, K. Kurokawa, S. Kuhara, 2006, DNA research : an international journal for rapid publication of reports on genes and genomes.

PimE Is a Polyprenol-phosphate-mannose-dependent Mannosyltransferase That Transfers the Fifth Mannose of Phosphatidylinositol Mannoside in Mycobacteria*

Malcolm J. McConville, Ken Kurokawa, Taroh Kinoshita, 2006, Journal of Biological Chemistry.

Development of a Multiplex PCR-Based Rapid Typing Method for Enterohemorrhagic Escherichia coli O157 Strains

Tetsuya Hayashi, K. Kurokawa, J. Terajima, 2009, Journal of Clinical Microbiology.

GHOSTM: A GPU-Accelerated Homology Search Tool for Metagenomics

Takashi Ishida, Yutaka Akiyama, Ken Kurokawa, 2012, PloS one.

Addendum: Enterotypes of the human gut microbiome

Jun Wang, Tetsuya Hayashi, Peer Bork, 2014, Nature.

Current and future trends in metagenomics : Development of knowledge bases

Hiroshi Mori, Takuji Yamada, Ken Kurokawa, 2012 .

Whole-Genome Sequence of the Purple Photosynthetic Bacterium Rhodovulum sulfidophilum Strain W4

Takuji Yamada, K. Kurokawa, S. Tabata, 2013, Genome Announcements.

Analysis of genomic characteristics and their influence on metabolism in Aspergillus luchuensis albino mutants using genome sequencing.

Takuji Yamada, K. Kurokawa, A. Toyoda, 2021, Fungal genetics and biology : FG & B.

Association of the Urease Gene with EnterohemorrhagicEscherichia coli Strains Irrespective of Their Serogroups

Tetsuya Hayashi, K. Kurokawa, M. Ohnishi, 2001, Journal of Clinical Microbiology.

Enterotypes of the human gut mycobiome

P. Bork, M. Arumugam, Jun Wang, 2022, bioRxiv.

RNA Polymerase Trafficking in Bacillus subtilis Cells

K. Kurokawa, S. Ishikawa, N. Ogasawara, 2010, Journal of bacteriology.