K. Rohr

H. Kauczor, K. Rohr, F. Rengier, 2017, Journal of endovascular therapy : an official journal of the International Society of Endovascular Specialists.

Tracing of siRNAs Inside Cells by FRET Imaging

K. Rohr, M. Helm, U. Massing, 2011 .

FRET imaging of cells transfected with siRNA/liposome complexes.

K. Rohr, M. Helm, U. Massing, 2010, Methods in molecular biology.

Statistical Shape Theory and Registration Methods for Analyzing the 3D Architecture of Chromatin in Interphase Cell Nuclei

K. Rohr, R. Eils, T. Cremer, 2011 .

Quantitative comparison of DNA detection by GFP-lac repressor tagging, fluorescence in situ hybridization and immunostaining

K. Rohr, R. Eils, S. Dietzel, 2007, BMC biotechnology.

CT Multi-Layer Cylindrical Object Delamination Analysis Using Randomized Hough Transformation

K. Rohr, A. Malcolm, R. Kakarala, 2013 .

Coupling of fluid and elastic models for biomechanical simulations of brain deformations using FEM

Karl Rohr, H. Siegfried Stiehl, Alexander Hagemann, 2002, Medical Image Anal..

Phosphorylation-Dependent Feedback Inhibition of RIG-I by DAPK1 Identified by Kinome-wide siRNA Screening.

K. Rohr, H. Erfle, L. Kaderali, 2017, Molecular cell.

Phosphorylation-Depende nt Feedback Inhibition of RIGI by DAPK 1 Identified by Kinome-wide siRNA Screening Graphical

K. Rohr, H. Erfle, L. Kaderali, 2017 .

Live‐Cell Assays to Identify Regulators of ER‐to‐Golgi Trafficking

K. Rohr, H. Erfle, R. Eils, 2012, Traffic.

Long-term cancer survival prediction using multimodal deep learning

L. A. Vale-Silva, K. Rohr, K. Rohr, 2020, Scientific Reports.

GRUU-Net: Integrated convolutional and gated recurrent neural network for cell segmentation

K Rohr, T Wollmann, M Gunkel, 2019, Medical Image Anal..

Structural analysis of interphase X-chromatin based on statistical shape theory.

Karl Rohr, Roland Eils, Thomas Cremer, 2008, Biochimica et biophysica acta.

Geometrical probability approach for analysis of 3D chromatin structure in interphase cell nuclei

Karl Rohr, Roland Eils, Evgeny Gladilin, 2007, 2007 IEEE Symposium on Computational Intelligence and Bioinformatics and Computational Biology.

Stochastical Analysis of Finite Point Sampling of 3D Chromatin Fiber in Interphase Cell Nuclei

Karl Rohr, Roland Eils, Evgeny Gladilin, 2007, BIRD.

An Objective Comparison of Cell Tracking Algorithms

Nathalie Harder, Karl Rohr, Lars Malmström, 2017, Nature Methods.

A benchmark for comparison of cell tracking algorithms

Nathalie Harder, Karl Rohr, Guy M. Hagen, 2014, Bioinform..

TRACKING OF VIRUS PARTICLES IN TIME-LAPSE FLUORESCENCE MICROSCOPY IMAGE SEQUENCES

Karl Rohr, Roland Eils, Stefan Wörz, 2007, 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Angiopoietin-2 Stimulation of Endothelial Cells Induces αvβ3 Integrin Internalization and Degradation*

M. Felcht, K. Rohr, Markus Thomas, 2010, The Journal of Biological Chemistry.

Quantification of telomere features in tumor tissue sections by an automated 3D imaging-based workflow.

Karl Rohr, Stefan Wörz, Holger Erfle, 2017, Methods.

Surveillance of siRNA integrity by FRET imaging

K. Rohr, M. Helm, U. Massing, 2007, Nucleic acids research.

A spherical harmonics intensity model for 3D segmentation and 3D shape analysis of heterochromatin foci

Karl Rohr, Andreas Biesdorf, Stefan Wörz, 2016, Medical Image Anal..

Spatiotemporal Coupling of the Hepatitis C Virus Replication Cycle by Creating a Lipid Droplet- Proximal Membranous Replication Compartment.

K. Rohr, R. Bartenschlager, Ji-Young Lee, 2019, Cell reports.

Quantitative analysis of chromatin interaction changes upon a 4.3 Mb deletion at mouse 4E2

Anirvan M. Sengupta, K. Rohr, R. Eils, 2015, BMC Genomics.

Recruitment and activation of a lipid kinase by hepatitis C virus NS5A is essential for integrity of the membranous replication compartment.

Thomas Lengauer, K. Rohr, H. Erfle, 2011, Cell host & microbe.

Overlapping gene coexpression patterns in human medullary thymic epithelial cells generate self-antigen diversity

K. Rohr, B. Brors, N. Harder, 2013, Proceedings of the National Academy of Sciences.

Modelling and identification of characteristic intensity variations

Karl Rohr, K. Rohr, 1992, Image Vis. Comput..

Feature Selection for Evaluating Fluorescence Microscopy Images in Genome-Wide Cell Screens

Nathalie Harder, Karl Rohr, Roland Eils, 2006, 2006 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'06).

Accessible and reproducible mass spectrometry imaging data analysis in Galaxy

Karl Rohr, Oliver Schilling, Thomas Wollmann, 2019, bioRxiv.

Spline-based elastic image registration: integration of landmark errors and orientation attributes

Karl Rohr, H. Siegfried Stiehl, Mike Fornefett, 2003, Comput. Vis. Image Underst..

Workflows for microscopy image analysis and cellular phenotyping.

Karl Rohr, Roland Eils, Holger Erfle, 2017, Journal of biotechnology.

Tracking Virus Particles in Fluorescence Microscopy Images Using Multi-Scale Detection and Multi-Frame Association

Karl Rohr, Roland Eils, William J. Godinez, 2015, IEEE Transactions on Image Processing.

A 3D intensity model based on spherical harmonics for automatic 3D segmentation of heterochromatin foci

Karl Rohr, Andreas Biesdorf, Stefan Wörz, 2013, 2013 IEEE 10th International Symposium on Biomedical Imaging.

Segmentation of Heterochromatin Foci Using a 3D Spherical Harmonics Intensity Model

Karl Rohr, Andreas Biesdorf, Stefan Wörz, 2013, Bildverarbeitung für die Medizin.

Combined Model-Based and Region-Adaptive 3D Segmentation and 3D Co-Localization Analysis of Heterochromatin Foci

Karl Rohr, Stefan Wörz, Simon Eck, 2012, Bildverarbeitung für die Medizin.

Model-Based Segmentation and Colocalization Quantification in 3D Microscopy Images

Karl Rohr, Stefan Wörz, Stefan Joos, 2010, Bildverarbeitung für die Medizin.

3D Geometry-Based Quantification of Colocalizations in Multichannel 3D Microscopy Images of Human Soft Tissue Tumors

Karl Rohr, Stefan Wörz, Stefan Joos, 2010, IEEE Transactions on Medical Imaging.

3D geometry-based quantification of colocalizations in three-channel 3D microscopy images of soft tissue tumors

Karl Rohr, Stefan Wörz, Stefan Joos, 2010, Medical Imaging.

Deterministic and probabilistic approaches for tracking virus particles in time-lapse fluorescence microscopy image sequences

Karl Rohr, Roland Eils, Stefan Wörz, 2009, Medical Image Anal..

Model-based segmentation and quantification of subcellular structures in 2D and 3D fluorescent microscopy images

Karl Rohr, Stefan Wörz, Matthias Weiss, 2008, SPIE Medical Imaging.

A model for the self-organization of exit sites in the endoplasmic reticulum

Karl Rohr, Stephan Heinzer, Matthias Weiss, 2008, Journal of Cell Science.

Model-based segmentation and quantification of fluorescent bacteria in 3D microscopy live cell images

Karl Rohr, Roland Eils, Stefan Wörz, 2007, SPIE Medical Imaging.

Temporal control of the integrated stress response by a stochastic molecular switch

K. Rohr, R. Eils, R. Bartenschlager, 2022, bioRxiv.

Nonrigid Registration of 2-D and 3-D Dynamic Cell Nuclei Images for Improved Classification of Subcellular Particle Motion

Karl Rohr, Roland Eils, Yi-Chun Chen, 2011, IEEE Transactions on Image Processing.

Analyzing the Variability of the 3D Structure of Chromatin Fiber Using Statistical Shape Theory

Karl Rohr, Roland Eils, Roel van Driel, 2007, DAGM-Symposium.

Variability Analysis of the Large-Scale Structure of Interphase Chromatin Fiber Based on Statistical Shape Theory

Karl Rohr, Roland Eils, Roel van Driel, 2007, MDA.

Nonrigid Registration of 3-D Multichannel Microscopy Images of Cell Nuclei

Karl Rohr, Roland Eils, Siwei Yang, 2008, IEEE Transactions on Image Processing.

Non-rigid Registration of 3D Multi-channel Microscopy Images of Cell Nuclei

Karl Rohr, Roland Eils, Thomas Cremer, 2006, MICCAI.

Investigating the Role of F-Actin in Human Immunodeficiency Virus Assembly by Live-Cell Microscopy

Karl Rohr, William J. Godinez, Barbara Müller, 2014, Journal of Virology.

Dynamic oscillation of translation and stress granule formation mark the cellular response to virus infection.

K. Rohr, L. Kaderali, P. Bankhead, 2012, Cell host & microbe.

Exterior orientation — an automatic approach based on fitting analytic landmark models

Karl Rohr, Christian Drewniok, K. Rohr, 1997 .

Clathrin-adaptor ratio and membrane tension regulate the flat-to-curved transition of the clathrin coat during endocytosis

William J. Godinez, K. Rohr, U. Schwarz, 2018, Nature Communications.

Chromosome segregation by the Escherichia coli Min system

William J. Godinez, D. Heermann, K. Rohr, 2013, Molecular systems biology.

Integrating Vision and Language: Towards Automatic Description of Human Movements

Karl Rohr, Gerd Herzog, K. Rohr, 1995, KI.

Efficient globally optimal segmentation of cells in fluorescence microscopy images using level sets and convex energy functionals

Karl Rohr, Jan-Philip Bergeest, K. Rohr, 2012, Medical Image Anal..

Automated Analysis of Single-Molecule Photobleaching Data by Statistical Modeling of Spot Populations.

Karl Rohr, Roland Eils, Stefan Wörz, 2015, Biophysical journal.

Automated Analysis of Mitotic Phenotypes in Fluorescence Microscopy Images of Human Cells

Nathalie Harder, Karl Rohr, Roland Eils, 2006, Bildverarbeitung für die Medizin.

Automated recognition of mitotic patterns in fluorescence microscopy images of human cells

Nathalie Harder, Karl Rohr, Roland Eils, 2006, 3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro, 2006..

Predicting breast tumor proliferation from whole‐slide images: The TUPAC16 challenge

Karl Rohr, Matheus Palhares Viana, Mitko Veta, 2018, Medical Image Anal..

Elastic Registration of Multimodal Medical Images: A Survey

Karl Rohr, K. Rohr, 2000, Künstliche Intell..

On Validation of Non-physical Techniques for Elastic Image Registration

Karl Rohr, Roland Eils, Evgeny Gladilin, 2007, Bildverarbeitung für die Medizin.

Parameter-Free Elastic Deformation Approach for 2D and 3D Registration Using Prescribed Displacements

Karl Rohr, Christoph Schnörr, H. Siegfried Stiehl, 1999, Journal of Mathematical Imaging and Vision.

Extraction of 3d anatomical point landmarks based on invariance principles

Karl Rohr, K. Rohr, 1999, Pattern Recognit..

Non-Rigid Image Registration Using a Parameter-Free Elastic Model

Karl Rohr, Christoph Schnörr, H. Siegfried Stiehl, 1998, BMVC.

Two-Step Parameter-Free Elastic Image Registration with Prescribed Point Displacements

Karl Rohr, Christoph Schnörr, H. Siegfried Stiehl, 1997, ICIAP.

Spline‐Based Elastic Image Registration

Karl Rohr, K. Rohr, 2003 .

Elastic registration of electrophoresis images using intensity information and point landmarks

Karl Rohr, Pascal Cathier, Stefan Wörz, 2004, Pattern Recognit..

3D morphometry using automated aortic segmentation in native MR angiography: an alternative to contrast enhanced MRA?

Karl Rohr, Andreas Biesdorf, Stefan Wörz, 2014, Cardiovascular diagnosis and therapy.

Clathrin Coat Controls Vesicle Acidification by Blocking Vacuolar ATPase Activity

K. Rohr, E. Johnston-Halperin, D. Drubin, 2018 .

Tracking multiple particles in fluorescence microscopy images via probabilistic data association

Karl Rohr, Roland Eils, William J. Godinez, 2011, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

A Recurrent Neural Network for Particle Tracking in Microscopy Images Using Future Information, Track Hypotheses, and Multiple Detections

Karl Rohr, Barbara Müller, Ji-Young Lee, 2020, IEEE Transactions on Image Processing.

Segmentation and Quantification of Human Vessels Using a 3-D Cylindrical Intensity Model

Karl Rohr, Stefan Wörz, K. Rohr, 2007, IEEE Transactions on Image Processing.

International Archives for Photogrammetry and Remote Sensing Volume XXXI Part B Commission IV APPLICATION OF ELASTIC REGISTRATION TO IMAGERY FROM AIRBORNE SCANNERS

Karl Rohr, Rafael Wiemker, K. Rohr, 1996 .

Recognizing corners by fitting parametric models

Karl Rohr, K. Rohr, 1992, International Journal of Computer Vision.

Performance Characterization of Landmark Operators

Karl Rohr, H. Siegfried Stiehl, Sönke Frantz, 1998, Theoretical Foundations of Computer Vision.

Measurements of lenticulostriate arteries using 7T MRI: new imaging markers for subcortical vascular dementia

Karl Rohr, Sang Won Seo, Zang-Hee Cho, 2012, Journal of the Neurological Sciences.

A New Class of Elastic Body Splines for Nonrigid Registration of Medical Images

Karl Rohr, H. Siegfried Stiehl, Jan Kohlrausch, 2005, Journal of Mathematical Imaging and Vision.

The long non-coding RNA LINC00152 is essential for cell cycle progression through mitosis in HeLa cells

K. Rohr, H. Erfle, M. Boutros, 2017, Scientific Reports.

Image Registration Based on Thin-Plate Splines and Local Estimates of Anisotropic Landmark Localization Uncertainties

Karl Rohr, K. Rohr, 1998, MICCAI.

Haralick's Texture Features Computed by GPUs for Biological Applications

Apichat Suratanee, Nathalie Harder, Markus Gipp, 2009 .

Robust segmentation of tubular structures in 3-D medical images by parametric object detection and tracking

Karl Rohr, H. Siegfried Stiehl, Thorsten Behrens, 2003, IEEE Trans. Syst. Man Cybern. Part B.

Using an Extended Hough Transform Combined with a Kalman Filter to Segment Tubular Structures in 3D Medical Images

K. Rohr, H. Stiehl, T. Behrens, 2001, VMV.

Segmentation of Tubular Structures in 3D Images Using a Combination of the Hough Transform and a Kalman Filter

Karl Rohr, H. Siegfried Stiehl, Thorsten Behrens, 2001, DAGM-Symposium.

Phenotypic memory in Bacillus subtilis links dormancy entry and exit by a spore quantity-quality tradeoff

K. Rohr, T. Höfer, Marika Ziesack, 2018, Nature Communications.

Deep Consensus Network: Aggregating predictions to improve object detection in microscopy images

Karl Rohr, Thomas Wollmann, K. Rohr, 2021, Medical Image Anal..

Deep residual Hough voting for mitotic cell detection in histopathology images

Karl Rohr, Thomas Wollmann, K. Rohr, 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017).

Pan-Cancer Prognosis Prediction Using Multimodal Deep Learning

Karl Rohr, Luís A. Vale Silva, K. Rohr, 2020, 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI).

Stathmin Regulates Keratinocyte Proliferation and Migration during Cutaneous Regeneration

K. Rohr, F. Matthäus, P. Schirmacher, 2013, PloS one.

Geometric alignment of 2D gel electrophoresis images using physics-based elastic registration

Karl Rohr, Stefan Wörz, Marie-Luise Winz, 2008, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Landmark-based elastic registration using approximating thin-plate splines

Jürgen Weese, Karl Rohr, Thorsten M. Buzug, 2001, IEEE Transactions on Medical Imaging.

Spline-Based Hybrid Image Registration using Landmark and Intensity Information based on Matrix-Valued Non-radial Basis Functions

Karl Rohr, Stefan Wörz, K. Rohr, 2013, International Journal of Computer Vision.

Radial basis functions with compact support for elastic registration of medical images

Karl Rohr, H. Siegfried Stiehl, Mike Fornefett, 2001, Image Vis. Comput..

Automatic Single-Cell Segmentation and Tracking of Bacterial Cells in Fluorescence Microscopy Images

Nathalie Harder, Karl Rohr, Ilka B. Bischofs, 2015, Bildverarbeitung für die Medizin.

3D geometric analysis of the aorta in 3D MRA follow-up pediatric image data

Karl Rohr, Stefan Wörz, Hendrik von Tengg-Kobligk, 2014, Medical Imaging.

Quantification of the Aortic Morphology in Follow-Up 3D-MRA Images of Children

Karl Rohr, Stefan Wörz, Hendrik von Tengg-Kobligk, 2014, Bildverarbeitung für die Medizin.

Progressive Minimal Path Method for Segmentation of 2D and 3D Line Structures

Karl Rohr, Zang-Hee Cho, Wei Liao, 2018, IEEE Transactions on Pattern Analysis and Machine Intelligence.

On the Precision in Estimating the Location of Edges and Corners

Karl Rohr, K. Rohr, 2004, Journal of Mathematical Imaging and Vision.

Automatic Exterior Orientation Of Aerial Images In Urban Environments

Karl Rohr, Christian Drewniok, K. Rohr, 1996 .

Localization of anatomical point landmarks in 3D medical images by fitting 3D parametric intensity models

Karl Rohr, Stefan Wörz, K. Rohr, 2006, Medical Image Anal..

Development and validation of a multi-step approach to improved detection of 3D point landmarks in tomographic images

Karl Rohr, H. Siegfried Stiehl, Sönke Frantz, 2005, Image Vis. Comput..

Improving the Robustness in Extracting 3D Point Landmarks from 3D Medical Images Using Parametric Deformable Models

Karl Rohr, H. Siegfried Stiehl, Sönke Frantz, 2001, MICCAI.

Localization of 3D Anatomical Point Landmarks in 3D Tomographic Images Using Deformable Models

Karl Rohr, H. Siegfried Stiehl, Sönke Frantz, 2000, MICCAI.

Improving the Detection Performance in Semi-automatic Landmark Extraction

Karl Rohr, H. Siegfried Stiehl, Sönke Frantz, 1999, MICCAI.

Multi-Step Procedures for the Localization of 2D and 3D Point Landmarks and Automatic ROI Size Selection

Karl Rohr, H. Siegfried Stiehl, Sönke Frantz, 1998, ECCV.

Using Deformable Models for the Localization of 3D Anatomical Point Landmarks in 3D Tomographic Images

Karl Rohr, H. Siegfried Stiehl, Sönke Frantz, 2001, Bildverarbeitung für die Medizin.

Experimental and computational analyses reveal that environmental restrictions shape HIV-1 spread in 3D cultures

William J. Godinez, Nikolas D. Schnellbächer, K. Rohr, 2019, Nature Communications.

Optimizing Particle Detection by Colocalization Analysis in Multi-Channel Fluorescence Microscopy Images

K. Rohr, C. Ritter, A. Newrly, 2020, 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI).

Two-filter probabilistic data association for tracking of virus particles in fluorescence microscopy images

Karl Rohr, Ralf Bartenschlager, Christian Ritter, 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018).

Tracking Multiple Particles in Fluorescence Time-Lapse Microscopy Images via Probabilistic Data Association

Karl Rohr, William J. Godinez, K. Rohr, 2015, IEEE Transactions on Medical Imaging.

Biomechanically based simulation of brain deformations for intraoperative image correction: coupling of elastic and fluid models

Karl Rohr, H. Siegfried Stiehl, Alexander Hagemann, 2000, Medical Imaging: Image Processing.

Nonrigid matching of tomographic images based on a biomechanical model of the human head

Karl Rohr, H. Siegfried Stiehl, Uwe Spetzger, 1999, Medical Imaging.

Automatic 3D Segmentation and Quantification of Lenticulostriate Arteries from High-Resolution 7 Tesla MRA Images

Karl Rohr, Wei Liao, Zang-Hee Cho, 2016, IEEE Transactions on Image Processing.

Elastic registration of high-resolution 3D PLI data of the human brain

Karl Rohr, Roland Eils, Sharib Ali, 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017).

Aortic morphometry at endograft position as assessed by 3D image analysis affects risk of type I endoleak formation after TEVAR

Karl Rohr, Stefan Wörz, Fabian Rengier, 2015, Langenbeck's Archives of Surgery.

Model-Based Segmentation and Motion Analysis of the Thoracic Aorta from 4D ECG-Gated CTA Images

Karl Rohr, Andreas Biesdorf, Stefan Wörz, 2011, MICCAI.

Biomedical Modeling of the Human Head for Physically-based, Non-rigid Image Registration

Karl Rohr, H. Siegfried Stiehl, Uwe Spetzger, 1999, IEEE Trans. Medical Imaging.

Segmentation and quantification of the aortic arch using joint 3D model-based segmentation and elastic image registration

Karl Rohr, Andreas Biesdorf, Stefan Wörz, 2012, Medical Image Anal..

Physics-based elastic registration using non-radial basis functions and including landmark localization uncertainties

Karl Rohr, Stefan Wörz, K. Rohr, 2008, Comput. Vis. Image Underst..

Spline-Based Elastic Image Registration with Matrix-Valued Basis Functions Using Landmark and Intensity Information

Karl Rohr, Stefan Wörz, K. Rohr, 2007, DAGM-Symposium.

Limits on Estimating the Width of Thin Tubular Structures in 3D Images

Karl Rohr, Stefan Wörz, K. Rohr, 2006, MICCAI.

Flat-to-curved transition during clathrin-mediated 1 endocytosis correlates with a change in clathrin-adaptor 2 ratio and is regulated by membrane tension 3 4

William J. Godinez, K. Rohr, U. Schwarz, 2017 .

Multi-channel boosting and multi-scale localization-based tracking of dense malarial sporozoites

Karl Rohr, Astha Jaiswal, Friedrich Frischknecht, 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018).

EfficientCellSeg: Efficient Volumetric Cell Segmentation Using Context Aware Pseudocoloring

K. Rohr, Royden Wagner, 2022, MIDL.

Non-Rigid Registration Of Live Cell Nuclei Using Global Optical Flow with Elasticity Constraints

Karl Rohr, Qi Gao, M. Cristina Cardoso, 2021, 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI).

A Global Method for Non-Rigid Registration of Cell Nuclei in Live Cell Time-Lapse Images

Karl Rohr, Qi Gao, K. Rohr, 2019, IEEE Transactions on Medical Imaging.

Diffeomorphic Multi-Frame Non-Rigid Registration of Cell Nuclei in 2D and 3D Live Cell Images

Karl Rohr, Marco Tektonidis, K. Rohr, 2017, IEEE Transactions on Image Processing.

Non-Rigid Contour-Based Registration of Cell Nuclei in 2-D Live Cell Microscopy Images Using a Dynamic Elasticity Model

Karl Rohr, Pavel Matula, Igor Peterlik, 2018, IEEE Transactions on Medical Imaging.

Inception Capsule Network for Retinal Blood Vessel Segmentation and Centerline Extraction

Karl Rohr, Christian Kromm, K. Rohr, 2019, bioRxiv.

Superadditivity and Convex Optimization for Globally Optimal Cell Segmentation Using Deformable Shape Models

K. Rohr, Leonid Kostrykin, 2022, IEEE Transactions on Pattern Analysis and Machine Intelligence.

Globally optimal segmentation of cell nuclei in fluorescence microscopy images using shape and intensity information

L Kostrykin, C Schnörr, K Rohr, 2019, Medical Image Anal..

Fast Globally Optimal Segmentation of Cells in Fluorescence Microscopy Images

Karl Rohr, Jan-Philip Bergeest, K. Rohr, 2011, MICCAI.

Globally Optimal Curvature-Regularized Fast Marching for Vessel Segmentation

Karl Rohr, Wei Liao, Stefan Wörz, 2013, MICCAI.

Segmentation of cell nuclei using intensity-based model fitting and sequential convex programming

Karl Rohr, Christoph Schnörr, Leonid Kostrykin, 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018).

Segmentation of cell structures using Model-Based Set Covering with iterative reweighting

Karl Rohr, Rainer König, Christoph Schnörr, 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017).

Adversarial domain adaptation to improve automatic breast cancer grading in lymph nodes

Karl Rohr, Thomas Wollmann, C. S. Eijkman, 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018).

Hyperparameter optimization for image analysis: application to prostate tissue images and live cell data of virus-infected cells

Karl Rohr, Holger Erfle, Ralf Bartenschlager, 2019, International Journal of Computer Assisted Radiology and Surgery.

Deep Learning For Particle Detection And Tracking In Fluorescence Microscopy Images

Karl Rohr, Ralf Bartenschlager, Roman Spilger, 2021, 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI).

Deep Particle Tracker: Automatic Tracking of Particles in Fluorescence Microscopy Images Using Deep Learning

Karl Rohr, Yu Qiang, Ralf Bartenschlager, 2018, DLMIA/ML-CDS@MICCAI.

Phenotypic memory in Bacillus subtilis links dormancy entry and exit by a spore quantity-quality tradeoff

K. Rohr, T. Höfer, Marika Ziesack, 2018, Nature Communications.

Data fusion and smoothing for probabilistic tracking of viral structures in fluorescence microscopy images

Karl Rohr, Ralf Bartenschlager, Thomas Wollmann, 2021, Medical Image Anal..

Experimental and computational analyses reveal that environmental restrictions shape HIV-1 spread in 3D cultures.

William J. Godinez, Nikolas D. Schnellbächer, K. Rohr, 2019, Nature communications.

Determination of the Maximum Velocity of Filaments in the in vitro Motility Assay

K. Rohr, R. Fink, Lisa M. Scheid, 2019, Front. Physiol..

Bayesian joint super-resolution, deconvolution, and denoising of images with Poisson-Gaussian noise

Karl Rohr, Simon Eck, Karsten Rippe, 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018).

Thin-plate spline approximation for image registration

K. Rohr, H. Stiehl, R. Sprengel, 1996, Proceedings of 18th Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

An adaptive irregular grid approach for 3D deformable image registration

Karl Rohr, Evgeny Gladilin, Vladimir Pekar, 2006, Physics in medicine and biology.

Live Cell Analysis and Mathematical Modeling Identify Determinants of Attenuation of Dengue Virus 2’-O-Methylation Mutant

K. Rohr, N. Harder, R. Bartenschlager, 2015, PLoS pathogens.

Phosphorylation-Dependent Feedback Inhibition of RIG-I by DAPK1 Identified by Kinome-wide siRNA Screening.

K. Rohr, H. Erfle, L. Kaderali, 2017, Molecules and Cells.

PML induces compaction, TRF2 depletion and DNA damage signaling at telomeres and promotes their alternative lengthening

Katharina I. Deeg, K. Rohr, H. Erfle, 2015, Journal of Cell Science.

Direct combination of multi-scale detection and multi-frame association for tracking of virus particles in microscopy image data

Karl Rohr, William J. Godinez, Astha Jaiswal, 2016, 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI).

Analysis of viral surfing based on fluorescence microscopy imaging and automatic tracking

Karl Rohr, William J. Godinez, Maik Jörg Lehmann, 2012, 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI).

Tracking virus particles in fluorescence microscopy images using two-step multi-frame association

Karl Rohr, Roland Eils, William J. Godinez, 2012, 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI).

Tracking Virus Particles in Microscopy Images Using Multi-Frame Association

Karl Rohr, Roland Eils, William J. Godinez, 2012, Bildverarbeitung für die Medizin.

Characterizing Protein Interactions Employing a Genome-Wide siRNA Cellular Phenotyping Screen

Martin H. Schaefer, K. Rohr, R. Eils, 2014, PLoS Comput. Biol..

Cramér-Rao Bounds for Estimating the Position and Width of 3D Tubular Structures and Analysis of Thin Structures with Application to Vascular Images

Karl Rohr, Stefan Wörz, K. Rohr, 2008, Journal of Mathematical Imaging and Vision.

Comparison of segmentation methods for tissue microscopy images of glioblastoma cells

Karl Rohr, Holger Erfle, Manuel Gunkel, 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018).

Large‐scale tracking and classification for automatic analysis of cell migration and proliferation, and experimental optimization of high‐throughput screens of neuroblastoma cells

Nathalie Harder, Karl Rohr, Roland Eils, 2015, Cytometry. Part A : the journal of the International Society for Analytical Cytology.

Segmentation of cell nuclei in 3D microscopy images based on level set deformable models and convex minimization

Karl Rohr, Jan-Philip Bergeest, K. Rohr, 2014, 2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI).

Cell Segmentation and Cell Splitting Based on Gradient Flow Tracking in Microscopic Images

Karl Rohr, Stefan Wörz, Julian Hennies, 2014, Bildverarbeitung für die Medizin.

Pseudorapidity density of charged particles in p-Pb collisions at sqrt(s) = 5.02 TeV

A. A. Malaev, G. A. Herrmann, Saúl A. Blanco, 2013 .

Correction: Stathmin Regulates Keratinocyte Proliferation and Migration during Cutaneous Regeneration

K. Rohr, F. Matthäus, P. Schirmacher, 2013, PLoS ONE.

Globally Minimal Path Method Using Dynamic Speed Functions Based on Progressive Wave Propagation

Karl Rohr, Wei Liao, Stefan Wörz, 2012, ACCV.

Automatic human brain vessel segmentation from 3D 7 Tesla MRA images using fast marching with anisotropic directional prior

Karl Rohr, Wei Liao, Zang-Hee Cho, 2012, 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI).

A generative MRF approach for automatic 3D segmentation of cerebral vasculature from 7 Tesla MRA images

Karl Rohr, Wei Liao, Zang-Hee Cho, 2011, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Hybrid Spline-Based Multimodal Registration Using Local Measures for Joint Entropy and Mutual Information

Karl Rohr, Andreas Biesdorf, Christoph Stippich, 2009, MICCAI.

Semi-algebraic solids in 3-space: a survey of modelling schemes and implications for view graphs

Karl Rohr, J. H. Rieger, K. Rohr, 1994, Image Vis. Comput..

Deep Segmentation of Bacteria at Different Stages of the Life Cycle

Karl Rohr, Ilka B. Bischofs, Roman Spilger, 2020, Bildverarbeitung für die Medizin.

Flat-to-curved transition during clathrin-mediated endocytosis correlates with a change in clathrin-adaptor ratio and is regulated by membrane tension

William J. Godinez, K. Rohr, U. Schwarz, 2017, bioRxiv.

Automatic analysis of dividing cells in live cell movies to detect mitotic delays and correlate phenotypes in time.

William J. Godinez, K. Rohr, J. Ellenberg, 2009, Genome research.

Automatic breast cancer grading in lymph nodes using a deep neural network pdf

Karl Rohr, Thomas Wollmann, K. Rohr, 2017, ArXiv.

Approximating Thin-Plate Splines for Elastic Registration: Integration of Landmark Errors and Orientation Attributes

Karl Rohr, H. Siegfried Stiehl, Mike Fornefett, 1999, IPMI.

Chromosome segregation by the Escherichia coli Min system

William J. Godinez, D. Heermann, K. Rohr, 2013, Molecular systems biology.

FPGA-accelerated Richardson-Lucy deconvolution for 3D image data

Karl Rohr, Wolfgang Karl, Christian Conrad, 2016, 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI).

Combined automated 3D volumetry by pulmonary CT angiography and echocardiography for detection of pulmonary hypertension

H. Kauczor, K. Rohr, F. Rengier, 2019, European Radiology.

University of Birmingham Automated analysis of single-molecule photobleaching data by statistical modeling of spot populations

K. Rohr, R. Eils, D. Herten, 2016 .

Radial basis functions with compact support for elastic registration of medical images

K. Rohr, H. Stiehl, M. Fornefett, 2001, Image Vis. Comput..