S. Dudoit

发表

Augmentation Procedures for Control of the Generalized Family-Wise Error Rate and Tail Probabilities for the Proportion of False Positives

M. J. van der Laan, S. Dudoit, K. Pollard, 2004, Statistical applications in genetics and molecular biology.

Comparison of Discrimination Methods for the Classification of Tumors Using Gene Expression Data

S. Dudoit, J. Fridlyand, T. Speed, 2002 .

Multiple Hypothesis Testing in Microarray Experiments

S. Dudoit, J. Boldrick, J. Shaffer, 2003 .

Biases in Illumina transcriptome sequencing caused by random hexamer priming

K. Hansen, S. Dudoit, S. Brenner, 2010, Nucleic acids research.

Gains in Power from Structured Two-Sample Tests of Means on Graphs

S. Dudoit, Laurent Jacob, P. Neuvial, 2010, 1009.5173.

A prediction-based resampling method for estimating the number of clusters in a dataset

S. Dudoit, J. Fridlyand, 2002, Genome Biology.

Introduction to Classification in Microarray Experiments

S. Dudoit, Jane Fridly, 2003 .

STATISTICAL METHODS FOR IDENTIFYING DIFFERENTIALLY EXPRESSED GENES IN REPLICATED cDNA MICROARRAY EXPERIMENTS

S. Dudoit, T. Speed, Y. Yang, 2002 .

Bagging to Improve the Accuracy of A Clustering Procedure

Sandrine Dudoit, Jane Fridlyand, S. Dudoit, 2003, Bioinform..

Statistical Applications in Genetics and Molecular Biology Asymptotic Optimality of Likelihood-Based Cross-Validation

S. Keleş, M. J. van der Laan, S. Dudoit, 2011 .

Comparison of discrimination methods for the classification of tumors using gene expression data

S. Dudoit, J. Fridlyand, T. Speed, 2002 .

Bioconductor: open software development for computational biology and bioinformatics

Jean YH Yang, K. Hornik, L. Tierney, 2004, Genome Biology.

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation.

S. Dudoit, T. Speed, V. Peng, 2002, Nucleic acids research.

Multiple Testing Procedures with Applications to Genomics

S. Dudoit, K. Pollard, M. Birkner, 2007 .

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics

Russell B. Fletcher, S. Dudoit, E. Purdom, 2017, BMC Genomics.

Asymptotics of cross-validated risk estimation in estimator selection and performance assessment

S. Dudoit, M. Laan, 2005 .

Oracle inequalities for multi-fold cross validation

A. V. D. Vaart, S. Dudoit, M. Laan, 2006 .

A general and flexible method for signal extraction from single-cell RNA-seq data

S. Dudoit, Jean-Philippe Vert, D. Risso, 2018, Nature Communications.

Gene expression patterns in human liver cancers.

D. Botstein, P. Brown, S. Dudoit, 2002, Molecular biology of the cell.

Microarray expression profiling identifies genes with altered expression in HDL-deficient mice.

S. Dudoit, T. Speed, M. Callow, 2000, Genome research.

Normalization of RNA-seq data using factor analysis of control genes or samples

S. Dudoit, T. Speed, J. Ngai, 2014, Nature Biotechnology.

Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq

Sandrine Dudoit, Nir Yosef, Davide Risso, 2017 .

Deconstructing Olfactory Stem Cell Trajectories at Single-Cell Resolution.

Russell B. Fletcher, S. Dudoit, E. Purdom, 2017, Cell stem cell.

Injury Activates Transient Olfactory Stem Cell States with Diverse Lineage Capacities.

Russell B. Fletcher, S. Dudoit, E. Purdom, 2017, Cell stem cell.

ZINB-WaVE: A general and flexible method for signal extraction from single-cell RNA-seq data

Jean-Philippe Vert, Sandrine Dudoit, Davide Risso, 2017, bioRxiv.

Normalizing single-cell RNA sequencing data: challenges and opportunities

Sandrine Dudoit, Davide Risso, John C Marioni, 2017, Nature Methods.

Tree-based multivariate regression and density estimation with right-censored data

S. Dudoit, M. J. Laan, A. Molinaro, 2004 .

Survival ensembles.

P. Bühlmann, T. Hothorn, M. J. van der Laan, 2006, Biostatistics.

Accurate Determination of Bacterial Abundances in Human Metagenomes Using Full-length 16S Sequencing Reads

James H. Bullard, S. Dudoit, Fanny Perraudeau, 2017, bioRxiv.

An untargeted metabolomics method for archived newborn dried blood spots in epidemiologic studies

Sandrine Dudoit, Lauren Petrick, Kelsi Perttula, 2017, Metabolomics.

Metabolomics of neonatal blood spots reveal distinct phenotypes of pediatric acute lymphoblastic leukemia and potential effects of early-life nutrition.

Sandrine Dudoit, Henrik Carlsson, Craig E Wheelock, 2019, Cancer letters.

Untargeted adductomics of Cys34 modifications to human serum albumin in newborn dried blood spots

S. Dudoit, S. Rappaport, L. Petrick, 2019, Analytical and Bioanalytical Chemistry.

The Developmental Transcriptome of Drosophila melanogaster

Peter J. Bickel, Li Yang, Thomas R. Gingeras, 2010, Nature.

Comparison of Discrimination Methods for the Classification of Tumors Using Gene Expression Data

S. Dudoit, J. Fridlyand, T. Speed, 2002 .

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

Evan Z. Macosko, A. S. Booeshaghi, Ricky S. Adkins, 2020, bioRxiv.

Trajectory-based differential expression analysis for single-cell sequencing data

Hector Roux de Bézieux, S. Dudoit, Y. Saeys, 2019, Nature Communications.

Stereotyped and specific gene expression programs in human innate immune responses to bacteria

Ash A. Alizadeh, D. Botstein, P. Brown, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Supervised Detection of Regulatory Motifs in DNA Sequences

M. Eisen, S. Keleş, M. J. van der Laan, 2003, Statistical applications in genetics and molecular biology.

Joint Multiple Testing Procedures for Graphical Model Selection with Applications to Biological Networks

S. Dudoit, M. Laan, Houston N. Gilbert, 2009 .

Genome-Wide Identification of Alternative Splice Forms Down-Regulated by Nonsense-Mediated mRNA Decay in Drosophila

K. Hansen, S. Dudoit, S. Brenner, 2009, PLoS genetics.

Colon cancer prognosis prediction by gene expression profiling

T. Speed, S. Dudoit, A. Flahault, 2005, Oncogene.

Stage II colon cancer prognosis prediction by tumor gene expression profiling.

S. Dudoit, A. Flahault, A. Barrier, 2006, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

Prognosis of stage II colon cancer by non-neoplastic mucosa gene expression profiling

S. Dudoit, A. Flahault, P. Böelle, 2007, Oncogene.

Unified Cross-Validation Methodology For Selection Among Estimators and a General Cross-Validated Adaptive Epsilon-Net Estimator: Finite Sample Oracle Inequalities and Examples

S. Dudoit, M. Laan, 2003 .

Resampling-based multiple testing for microarray data analysis

S. Dudoit, T. Speed, You Ge, 2003 .

Multiple Testing Procedures: the multtest Package and Applications to Genomics

Sandrine Dudoit, Katherine S. Pollard, S. Dudoit, 2005 .

Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics

Sandrine Dudoit, Nir Yosef, Davide Risso, 2017 .

Polygenic and directional regulatory evolution across pathways in Saccharomyces

Sandrine Dudoit, James H. Bullard, Rachel B. Brem, 2010, Proceedings of the National Academy of Sciences.

Conservation of an RNA regulatory map between Drosophila and mammals.

Li Yang, Steven E Brenner, Sandrine Dudoit, 2011, Genome research.

Year Paper Multiple Hypothesis Testing in Microarray Experiments

S. Dudoit, J. Boldrick, J. Shaffer, 2016 .

Classification in microarray experiments

Sandrine Dudoit, Jane Fridlyand, S. Dudoit, 2003 .

Genetic Mapping of Complex Human Traits Using Single Nucleotide Polymorphisms: The ObeLinks Project

S. Dudoit, M. Laan, 2008 .

Test Statistics Null Distributions in Multiple Testing: Simulation Studies and Applications to Genomics

Sandrine Dudoit, Katherine S. Pollard, Mark J. van der Laan, 2005 .

Asymptotically optimal model selection method with right censored outcomes

S. Keleş, S. Dudoit, M. Laan, 2004 .

Novel Low Abundance and Transient RNAs in Yeast Revealed by Tiling Microarrays and Ultra High–Throughput Sequencing Are Not Conserved Across Closely Related Yeast Species

Sandrine Dudoit, Gavin Sherlock, Kasper Daniel Hansen, 2008, PLoS genetics.

Multiple Testing Procedures

S. Dudoit, 2004 .

[Gene expression profiling in colon cancer].

S. Dudoit, A. Flahault, A. Barrier, 2007, Bulletin de l'Academie nationale de medecine.

A multimodal cell census and atlas of the mammalian primary motor cortex

Satrajit S. Ghosh, Nicholas N. Foster, Evan Z. Macosko, 2020, Nature.

A general framework for statistical performance comparison of evolutionary computation algorithms

Seppo J. Ovaska, Sandrine Dudoit, Jarno Martikainen, 2006, Inf. Sci..

Multiple Testing. Part III. Procedures for Control of the Generalized Family-Wise Error Rate and Proportion of False Positives

S. Dudoit, K. Pollard, M. J. Laan, 2004 .

A F LEXIBLE A PPROACH FOR P REDICTIVE B IOMARKER D ISCOVERY

S. Dudoit, M. J. Laan, Ning Leng, 2022 .

Cys34 Adductomics Links Colorectal Cancer with the Gut Microbiota and Redox Biology.

S. Dudoit, P. Vineis, A. Naccarati, 2019, Cancer research.

Multiple Tests of Association with Biological

S. Keleş, S. Dudoit, M. Laan, 2006 .

Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia

Russell B. Fletcher, Hector Roux de Bézieux, David H. Brann, 2020, Science Advances.

Cross-Validated Loss-based Covariance Matrix Estimator Selection in High Dimensions

M. J. van der Laan, S. Dudoit, M. J. Laan, 2021, J. Comput. Graph. Stat..

Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia

Russell B. Fletcher, Hector Roux de Bézieux, David H. Brann, 2020, Science Advances.

Performance Assessment and Selection of Normalization Procedures forSingle-Cell RNA-Seq

S. Dudoit, E. Purdom, N. Yosef, 2019 .

A F LEXIBLE A PPROACH FOR P REDICTIVE B IOMARKER D ISCOVERY

S. Dudoit, M. J. Laan, Ning Leng, 2022 .

Untargeted adductomics of newborn dried blood spots identifies modifications to human serum albumin associated with childhood leukemia.

S. Dudoit, S. Rappaport, L. Petrick, 2019, Leukemia research.

Untargeted metabolomics of newborn dried blood spots reveals sex-specific associations with pediatric acute myeloid leukemia.

S. Dudoit, S. Rappaport, G. Dolios, 2021, Leukemia research.

Multiple tests of association with biological annotation metadata

Sandrine Dudoit, Mark J. van der Laan, S. Dudoit, 2008, 0805.3008.

Overview of Multiple Testing Procedures

Sandrine Dudoit, Mark J. van der Laan, S. Dudoit, 2008 .

cosmo: An R package for the supervised detection of conserved motifs in DNA sequences.

Sandrine Dudoit, Oliver Bembom, Fabian Lee Gallusser, 2006 .

Supervised Detection of Regulatory Motifs in

Michael B. Eisen, Sandrine Dudoit, Biao Xing, 2003 .

Untargeted lipidomic features associated with colorectal cancer in a prospective cohort

Paolo Vineis, Sandrine Dudoit, Marc J Gunter, 2018, BMC Cancer.

Single-Step Multiple Testing Procedures for Controlling General Type I Error Rates, Θ(Fvn)

Sandrine Dudoit, Mark J. van der Laan, S. Dudoit, 2008 .

Data-adaptive pipeline for filtering and normalizing metabolomics data

Sandrine Dudoit, Henrik Carlsson, Stephen M. Rappaport, 2018, bioRxiv.

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications

Charlotte Soneson, Jean-Philippe Vert, Sandrine Dudoit, 2018, Genome Biology.

Exploring High-Dimensional Biological Data with Sparse Contrastive Principal Component Analysis

Sandrine Dudoit, Nima S. Hejazi, Philippe Boileau, 2019, bioRxiv.

Multiple Hypothesis Testing in Microarray Data Analysis

Sandrine Dudoit, Mark J. van der Laan, Katie Pollard, 2003 .

Diverse transcriptional programs associated with environmental stress and hormones in the Arabidopsis receptor-like kinase gene family.

Sandrine Dudoit, Lee Chae, S. Dudoit, 2009, Molecular plant.

Silencing of Odorant Receptor Genes by G Protein βγ Signaling Ensures the Expression of One Odorant Receptor per Olfactory Sensory Neuron

Terence P. Speed, Sandrine Dudoit, Davide Risso, 2014, Neuron.

PB HLTH 240A: Advanced Categorical Data Analysis Fall 2007

Sandrine Dudoit, S. Dudoit, 2007 .

Identification of Regulatory Motifs in DNA Sequences

Sandrine Dudoit, Mark J. van der Laan, S. Dudoit, 2003 .

cosmoGUI: An R package for interactively constructing constraint sets as used by the cosmo R package.

Sandrine Dudoit, Oliver Bembom, Fabian Lee Gallusser, 2007 .

Step-Down Multiple Testing Procedures for Controlling the Family-Wise Error Rate

Sandrine Dudoit, Mark J. van der Laan, S. Dudoit, 2008 .

A flexible approach for predictive biomarker discovery.

M. J. van der Laan, S. Dudoit, Ning Leng, 2022, Biostatistics.

Bioinformatics and Computational Biology Solutions using R and Bioconductor

Rafael A. Irizarry, Sandrine Dudoit, Robert Gentleman, 2005 .

Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq.

Sandrine Dudoit, Nir Yosef, Davide Risso, 2019, Cell systems.

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics

Russell B. Fletcher, S. Dudoit, E. Purdom, 2017, bioRxiv.

Diversity, topographic differentiation, and positional memory in human fibroblasts

David Botstein, Sandrine Dudoit, Howard Y. Chang, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Extending the HSA-Cys34-Adductomics Pipeline to Modifications at Lys525.

S. Dudoit, S. Rappaport, H. Grigoryan, 2021, Chemical research in toxicology.

Untargeted lipidomic features associated with colorectal cancer in a prospective cohort

S. Dudoit, P. Vineis, A. Naccarati, 2018, BMC Cancer.

The Establishment of Gene Silencing at Single-Cell Resolution

S. Dudoit, J. Rine, E. Osborne, 2009, Nature Genetics.

A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

Evan Z. Macosko, A. S. Booeshaghi, Ricky S. Adkins, 2021, Nature.

GC-Content Normalization for RNA-Seq Data

Sandrine Dudoit, Davide Risso, Gavin Sherlock, 2011, BMC Bioinformatics.

Improving replicability in single-cell RNA-Seq cell type discovery with Dune

Sandrine Dudoit, Davide Risso, Jesse Gillis, 2020, bioRxiv.

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications

S. Dudoit, Jean-Philippe Vert, M. Robinson, 2018, bioRxiv.

A general and flexible method for signal extraction from single-cell RNA-seq data

S. Dudoit, Jean-Philippe Vert, D. Risso, 2018, Nature Communications.

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

Sandrine Dudoit, James H. Bullard, Elizabeth Purdom, 2010, BMC Bioinformatics.

Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects

S. Dudoit, J. Ngai, Kelly Street, 2021, bioRxiv.

clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets

Sandrine Dudoit, Davide Risso, Elizabeth Purdom, 2018, bioRxiv.

mammals and Drosophila Conservation of an RNA regulatory map between Material

Angela N. Brooks, K. Hansen, S. Dudoit, 2010 .

CALDERA: finding all significant de Bruijn subgraphs for bacterial GWAS

S. Dudoit, Laurent Jacob, Fanny Perraudeau, 2021, bioRxiv.

Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression.

Sandrine Dudoit, Kelly Street, Koen Van den Berge, 2021 .

Multiple Testing. Part III. Procedures for Control of the Generalized Family-Wise Error Rate and Proportion of False Positives

S. Dudoit, K. Pollard, M. J. Laan, 2004 .

Resampling-Based Multiple Hypothesis Testing with Applications to Genomics: New Developments in the R/Bioconductor Package multtest

Sandrine Dudoit, Katherine S. Pollard, Mark J. van der Laan, 2009 .

Gene Expression Profiling of Nonneoplastic Mucosa May Predict Clinical Outcome of Colon Cancer Patients

S. Dudoit, A. Flahault, A. Barrier, 2005, Diseases of the colon and rectum.

Bioconductor R Packages for Exploratory Analysis and Normalization of cDNA Microarray Data

Sandrine Dudoit, Jean Yee Hwa Yang, S. Dudoit, 2003 .

Ischemic preconditioning modulates the expression of several genes, leading to the overproduction of IL‐1Ra, iNOS, and Bcl‐2 in a human model of liver ischemia‐reperfusion

S. Dudoit, A. Flahault, A. Barrier, 2005, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

Multiple Testing Methods For ChIP - Chip High Density Oligonucleotide Array Data

Sandrine Dudoit, Mark J. van der Laan, Sündüz Keles, 2006, J. Comput. Biol..

More power via graph-structured tests for differential expression of gene networks

Sandrine Dudoit, Laurent Jacob, Pierre Neuvial, 2012, 1206.6980.

Open source software for the analysis of microarray data.

John Quackenbush, Sandrine Dudoit, Robert C Gentleman, 2003, BioTechniques.

Comparison of Methods for Image Analysis on cDNA Microarray Data

Terence P. Speed, Sandrine Dudoit, Yee Hwa Yang, 2002 .

GenomeGraphs: integrated genomic data visualization with R

Paul T. Spellman, Steffen Durinck, Sandrine Dudoit, 2009, BMC Bioinformatics.

An untargeted metabolomics method for archived newborn dried blood spots in epidemiologic studies

S. Dudoit, S. Rappaport, L. Petrick, 2017, Metabolomics.

Comparing Segmentation Methods for Genome Annotation Based on RNA-Seq Data

Stéphane Robin, Sandrine Dudoit, Alice Cleynen, 2014 .

Normalization for cDNA microarry data

Terence P. Speed, Sandrine Dudoit, Yee Hwa Yang, 2001, SPIE BiOS.

A score test for the linkage analysis of qualitative and quantitative traits based on identity by descent data from sib-pairs.

T P Speed, S Dudoit, S. Dudoit, 2000, Biostatistics.

Triangle Constraints for Sib-Pair Identity by Descent Probabilities under a General Multilocus Model for Disease Susceptibility

S. Dudoit, T. Speed, 1998 .

Microarray Expression Profiling Identifies Genes with Altered Expression in HDL-Deficient Mice

S. Dudoit, T. Speed, M. Callow, 2000, Genome Research.

IBD Configuration Transition Matrices and Linkage Score Tests for Unilineal Relative Pairs

S. Dudoit, 2003 .

A score test for linkage using identity by descent data from sibships

S. Dudoit, T. Speed, 1999 .

Multiple Testing Procedures and Applications to Genomics

Sandrine Dudoit, Katherine S. Pollard, S. Dudoit, 2004 .

Klf5 establishes bi-potential cell fate by dual regulation of ICM and TE specification genes

Hector Roux de Bézieux, S. Dudoit, Z. Xuan, 2021, bioRxiv.

Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression

Hector Roux de Bézieux, S. Dudoit, Kelly Street, 2021, bioRxiv.

Trajectory inference across multiple conditions with condiments:

Hector Roux de Bézieux, S. Dudoit, Kelly Street, 2021 .

Multiple Testing. Part II. Step-Down Procedures for Control of the Family-Wise Error Rate

Sandrine Dudoit, Katherine S. Pollard, Mark J. van der Laan, 2004, Statistical applications in genetics and molecular biology.

Optimization of the Architecture of Neural Networks Using a Deletion/Substitution/Addition Algorithm

Sandrine Dudoit, Mark J. van der Laan, Blythe Durbin, 2005 .

Multiple Testing. Part I. Single-Step Procedures for Control of General Type I Error Rates

Sandrine Dudoit, Katherine S. Pollard, Mark J. van der Laan, 2004, Statistical applications in genetics and molecular biology.

Filtering procedures for untargeted LC-MS metabolomics data

Sandrine Dudoit, Henrik Carlsson, Josie Hayes, 2019, BMC Bioinformatics.

Exploring High-Dimensional Biological Data with Sparse Contrastive Principal Component Analysis.

Sandrine Dudoit, Philippe Boileau, Nima S Hejazi, 2020, Bioinformatics.

Applications of Resampling Methods to Estimate the Number of Clusters and to Improve the Accuracy of

Sandrine Dudoit, Jane Fridlyand, S. Dudoit, 2001 .

Comprar Multiple Testing Procedures with Applications to Genomics | Dudoit, Sandrine | 9780387493169 | Springer

Sandrine Dudoit, Mark J. van der Laan, S. Dudoit, 2007 .

One-Carbon (Folate) Metabolism Pathway at Birth and Risk of Childhood Acute Lymphoblastic Leukemia: A Biomarker Study in Newborns

S. Dudoit, Xiaomei Ma, J. Wiemels, 2023, Cancers.

Exploration of global gene expression in human liver steatosis by high-density oligonucleotide microarray

S. Dudoit, A. Barrier, B. Debuire, 2006, Laboratory Investigation.

Loss-Based Estimation with Evolutionary Algorithms and Cross-Validation

Sandrine Dudoit, Richard H. Liang, David Shilane, 2010 .

The Cross-Validated Adaptive Epsilon-Net Estimator

Aad van der Vaart, Sandrine Dudoit, Mark J. van der Laan, 2006 .

A nonparametric framework for treatment effect modifier discovery in high dimensions

S. Dudoit, M. Laan, Ning Leng, 2023, 2304.05323.

Guidance on Individualized Treatment Rule Estimation in High Dimensions

S. Dudoit, Ning Leng, Philippe Boileau, 2023, 2306.16402.

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics

Russell B. Fletcher, S. Dudoit, E. Purdom, 2018, BMC Genomics.

Additional File_13 Additional References

Galt P. Barber, Hiram Clawson, Mark Diekhans, 2014 .

A general and flexible method for signal extraction from single-cell RNA-seq data

S. Dudoit, Jean-Philippe Vert, D. Risso, 2017, Nature Communications.

Asymptotics of Cross-Validated Risk Estimation in Model Selection and Performance Assessment

Sandrine Dudoit, Mark J. van der Laan, S. Dudoit, 2003 .

Extensions to a score test for genetic linkage with identity by descent data

S. Dudoit, D. Goldstein, 2003 .

Publisher Correction: A general and flexible method for signal extraction from single-cell RNA-seq data

Jean-Philippe Vert, Sandrine Dudoit, Davide Risso, 2019, Nature Communications.

The Role of Spike-In Standards in the Normalization of RNA-seq

Terence P. Speed, Sandrine Dudoit, Davide Risso, 2014 .

A fine-scale linkage-disequilibrium measure based on length of haplotype sharing.

Sandrine Dudoit, Yan Wang, Lue Ping Zhao, 2006, American journal of human genetics.

Power and robustness of a score test for linkage analysis of quantitative traits using identity by descent data on sib pairs

S. Dudoit, T. Speed, D. Goldstein, 2001, Genetic epidemiology.

Multiple Testing Procedures

S. Dudoit, 2004 .

Comparing Segmentation Methods for Genome Annotation Based on RNA-Seq Data

S. Dudoit, A. Cleynen, S. Robin, 2013, Journal of Agricultural, Biological, and Environmental Statistics.

Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq

S. Dudoit, E. Purdom, J. Ngai, 2017, bioRxiv.

Comparison of Discrimination Methods for the Classification of Tumors Using Gene Expression Data

S. Dudoit, J. Fridlyand, T. Speed, 2002 .

cvCovEst: Cross-validated covariance matrix estimator selection and evaluation in R

S. Dudoit, M. J. Laan, N. Hejazi, 2021, J. Open Source Softw..

Augmentation Procedures for Control of the Generalized Family-Wise Error Rate and Tail Probabilities for the Proportion of False Positives

M. J. van der Laan, S. Dudoit, K. Pollard, 2004, Statistical applications in genetics and molecular biology.

Statistical Applications in Genetics and Molecular Biology A Method to Increase the Power of Multiple Testing Procedures Through Sample Splitting

Sandrine Dudoit, Mark van der Laan, S. Dudoit, 2011 .

Ischemic preconditioning modulates the expression of several genes, leading to the overproduction of IL‐1Ra, iNOS, and Bcl‐2 in a human model of liver ischemia‐reperfusion

S. Dudoit, A. Flahault, A. Barrier, 2005, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

Multiple Testing. Part I. Single-Step Procedures for Control of General Type I Error Rates

M. J. van der Laan, S. Dudoit, K. Pollard, 2004, Statistical applications in genetics and molecular biology.

Multiple Testing Procedures for Controlling Tail Probability Error Rates

Sandrine Dudoit, Mark J. van der Laan, S. Dudoit, 2004 .

Quantification and Visualization of LD Patterns and Identification of Haplotype Blocks

Yan Wang, Sandrine Dudoit, S. Dudoit, 2004 .