J. Ahringer

发表

Roles for 147 embryonic lethal genes on C.elegans chromosome I identified by RNA interference and video microscopy

P. Zipperlen, A. Fraser, R. Kamath, 2001, The EMBO journal.

Functional genomic analysis of C. elegans chromosome I by systematic RNA interference

P. Zipperlen, A. Fraser, R. Kamath, 2000, Nature.

Broad chromosomal domains of histone modification patterns in C. elegans.

A. Rechtsteiner, J. Ahringer, J. Lieb, 2011, Genome research.

Systematic functional analysis of the Caenorhabditis elegans genome using RNAi

Y. Dong, R. Durbin, P. Zipperlen, 2003, Nature.

Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project

Raymond K. Auerbach, Kevin Y. Yip, Stefan R. Henz, 2010, Science.

Comparative analysis of metazoan chromatin

William Stafford Noble, Stephen C. J. Parker, Maxwell W. Libbrecht, 2014 .

Systematic bias in high-throughput sequencing data and its correction by BEADS

J. Ahringer, T. Down, I. Latorre, 2011, Nucleic acids research.

Genetic analysis of tissue aging in Caenorhabditis elegans: a role for heat-shock factor and bacterial proliferation.

A. Fraser, R. Kamath, J. Ahringer, 2002, Genetics.

Differential chromatin marking of introns and expressed exons by H3K36me3

J. Ahringer, T. Down, X. Liu, 2008, Nature Genetics.

Extreme HOT regions are CpG-dense promoters in C. elegans and humans

J. Ahringer, T. Down, Ron A.-J. Chen, 2014, Genome research.

The art and design of genetic screens: RNA interference

Michael Boutros, Julie Ahringer, J. Ahringer, 2008, Nature Reviews Genetics.

The USTC co-opts an ancient machinery to drive piRNA transcription in C. elegans

J. Ahringer, E. Miska, M. Dong, 2018, Genes & development.

The USTC complex co-opts an ancient machinery to drive piRNA transcription in C. elegans

J. Ahringer, E. Miska, M. Dong, 2018, bioRxiv.

Distinct roles for Galpha and Gbetagamma in regulating spindle position and orientation in Caenorhabditis elegans embryos.

J. Ahringer, M. Gotta, 2001, Nature cell biology.

Genome-wide RNAi screening in Caenorhabditis elegans.

R. Kamath, J. Ahringer, 2003, Methods.

Distinctive regulatory architectures of germline-active and somatic genes in C. elegans

J. Ahringer, Y. Dong, Jacques Serizay, 2020, Genome research.

Tissue-specific profiling reveals distinctive regulatory architectures for ubiquitous, germline and somatic genes

J. Ahringer, Y. Dong, Jacques Serizay, 2020, bioRxiv.

Genes that act downstream of DAF-16 to influence the lifespan of Caenorhabditis elegans

Cori Bargmann, S. Mccarroll, A. Fraser, 2003, Nature.

The landscape of RNA polymerase II transcription initiation in C. elegans reveals promoter and enhancer architectures

L. Hillier, J. Ahringer, T. Down, 2013, Genome research.

Effectiveness of specific RNA-mediated interference through ingested double-stranded RNA in Caenorhabditis elegans

P. Zipperlen, A. Fraser, R. Kamath, 2000, Genome Biology.

Genome-Wide RNAi of C. elegans Using the Hypersensitive rrf-3 Strain Reveals Novel Gene Functions

Andrew G Fraser, Julie Ahringer, A. Fraser, 2003, PLoS biology.

Genome-wide RNAi analysis of Caenorhabditis elegans fat regulatory genes

Gary Ruvkun, Julie Ahringer, Andrew G. Fraser, 2003, Nature.

A team of heterochromatin factors collaborates with small RNA pathways to combat repetitive elements and germline stress

Przemyslaw Stempor, Julie Ahringer, Alex Appert, 2017, bioRxiv.

Loss of the Putative RNA-Directed RNA Polymerase RRF-3 Makes C. elegans Hypersensitive to RNAi

Sandhya P Koushika, Julie Ahringer, Andrew Fire, 2002, Current Biology.

Playing Ping Pong with Pins: Cortical and Microtubule-Induced Polarity

J. Ahringer, 2005, Cell.

Physical and functional interaction between SET1/COMPASS complex component CFP-1 and a Sin3S HDAC complex in C. elegans

J. Ahringer, A. Appert, Y. Dong, 2019, Nucleic acids research.

CDK phosphorylation of SLD-2 is required for replication initiation and germline development in C. elegans

J. Ahringer, C. Bradshaw, Eva Zeiser, 2014, The Journal of Cell Biology.

Here we show that the C. elegans gene egl-27 encodes a protein similar to MTA1, a component of a protein complex with ATP-dependent nucleosome remodelling and histone deacetylation

J. Ahringer, A. Bateman, F. Solari, 1999 .

The Effects of Gene Regulation on Aging in Caenorhabditis elegans (2003)

Fraser, Cori Bargmann, S. Mccarroll, 2018 .

Accessible Region Conformation Capture (ARC-C) gives high-resolution insights into genome architecture and regulation

J. Ahringer, A. Appert, P. Stempor, 2021, Genome research.

Morphogenetic degeneracies in the actomyosin cortex

J. Ahringer, S. Grill, F. Jülicher, 2018, eLife.

Morphogenetic degeneracies in the 1 actomyosin cortex

J. Ahringer, S. Grill, F. Jülicher, 2018 .

The landscape of RNA polymerase II transcription initiation in C. elegans reveals a novel enhancer architecture

J. Ahringer, T. Down, Ron A.-J. Chen, 2013, Epigenetics & Chromatin.

The C. elegans even-skipped homologue, vab-7, specifies DB motoneurone identity and axon trajectory.

J. Ahringer, David M. Miller, Behrooz Esmaeili, 2002, Development.

The Caenorhabditis elegans genes egl-27 and egr-1 are similar to MTA1, a member of a chromatin regulatory complex, and are redundantly required for embryonic patterning.

J. Ahringer, A. Bateman, F. Solari, 1999, Development.

Living on the edge

Julie Ahringer, J. Ahringer, G. Poulin, 2005, Genome Biology.

PTL-1, a microtubule-associated protein with tau-like repeats from the nematode Caenorhabditis elegans.

J. Ahringer, M. Goedert, M. Spillantini, 1996, Journal of cell science.

Control of cell polarity and mitotic spindle positioning in animal cells.

J. Ahringer, 2003, Current opinion in cell biology.

An Alternative STAT Signaling Pathway Acts in Viral Immunity in Caenorhabditis elegans

J. Ahringer, E. Miska, P. Sarkies, 2017, mBio.

Control of the sperm–oocyte switch in Caenorhabditis elegans hermaphrodites by the fem-3 3′ untranslated region

J. Ahringer, J. Kimble, 1991, Nature.

A Genome-Wide Screen Identifies 27 Genes Involved in Transposon Silencing in C. elegans

Julie Ahringer, Andrew G. Fraser, A. Fraser, 2003, Current Biology.

RNA interference has second helpings

J. Ahringer, E. Miska, 2007, Nature Biotechnology.

Comparative Epigenomics Reveals that RNA Polymerase II Pausing and Chromatin Domain Organization Control Nematode piRNA Biogenesis

F. Piano, K. Gunsalus, J. Ahringer, 2019, Developmental cell.

Repressive Chromatin in Caenorhabditis elegans: Establishment, Composition, and Function

J. Ahringer, S. Gasser, 2018, Genetics.

PRDE-1 is a nuclear factor essential for the biogenesis of Ruby motif-dependent piRNAs in C. elegans

J. Ahringer, E. Miska, P. Sarkies, 2014, Genes & development.

DREAM represses distinct targets by cooperating with different THAP domain proteins

J. Ahringer, A. Appert, Chiara Cerrato, 2020, bioRxiv.

reveals promoter and enhancer architectures elegans C . The landscape of RNA polymerase II transcription initiation in Material Supplemental

L. Hillier, J. Ahringer, T. Down, 2013 .

Comparative analysis of metazoan chromatin organization

Moritz Herrmann, Manolis Kellis, Stephen C. J. Parker, 2014, Nature.

Posterior patterning by the Caenorhabditis elegans even-skipped homolog vab-7.

J. Ahringer, J Ahringer, 1996, Genes & development.

NuRD and SIN3 histone deacetylase complexes in development.

J. Ahringer, 2000, Trends in genetics : TIG.

Broad Chromatin Domains: An Important Facet of Genome Regulation

J. Ahringer, G. Sharma, Francesco N. Carelli, 2017, BioEssays : news and reviews in molecular, cellular and developmental biology.

Identification of genes that protect the C. elegans genome against mutations by genome-wide RNAi.

Andrew G Fraser, Julie Ahringer, A. Fraser, 2003, Genes & development.

Chromatin regulation and sumoylation in the inhibition of Ras‐induced vulval development in Caenorhabditis elegans

A. Fraser, J. Ahringer, G. Poulin, 2005, The EMBO journal.

Genome organization at different scales: nature, formation and function.

J. Ahringer, Jacques Serizay, 2018, Current opinion in cell biology.

High-resolution mapping of regulatory element interactions and genome architecture using ARC-C

J. Ahringer, N. Huang, Wei Qiang Seow, 2018, bioRxiv.

Chromatin accessibility dynamics across C. elegans development and ageing

J. Ahringer, S. Sauer, A. Appert, 2018, bioRxiv.

Chromatin accessibility is dynamically regulated across C. elegans development and ageing

J. Ahringer, A. Appert, P. Stempor, 2018, bioRxiv.

Duplication and Retention Biases of Essential and Non-Essential Genes Revealed by Systematic Knockdown Analyses

Tobias Warnecke, Laurence D. Hurst, Julie Ahringer, 2013, PLoS genetics.

Correction: Identification of DSB-1, a Protein Required for Initiation of Meiotic Recombination in Caenorhabditis elegans, Illuminates a Crossover Assurance Checkpoint

J. Ahringer, A. Villeneuve, A. Dernburg, 2013, PLoS Genetics.

Identification of DSB-1, a Protein Required for Initiation of Meiotic Recombination in Caenorhabditis elegans, Illuminates a Crossover Assurance Checkpoint

J. Ahringer, A. Villeneuve, A. Dernburg, 2013, PLoS genetics.

TAC-1, a Regulator of Microtubule Length in the C. elegans Embryo

J. Ahringer, M. Tsai, N. Bot, 2003, Current Biology.

SeqPlots - Interactive software for exploratory data analyses, pattern discovery and visualization in genomics

Przemyslaw Stempor, Julie Ahringer, J. Ahringer, 2016, Wellcome open research.

Embryonic tissue differentiation in Caenorhabditis elegans requires dif‐1, a gene homologous to mitochondrial solute carriers.

J. Ahringer, 1995, The EMBO journal.

Genome-wide RNAi identifies p53-dependent and -independent regulators of germ cell apoptosis in C. elegans

A. Fraser, R. Kamath, J. Ahringer, 2004, Cell Death and Differentiation.

The DREAM complex promotes gene body H2A.Z for target repression

J. Ahringer, I. Latorre, S. Strome, 2015, Genes & development.

NURD-complex genes antagonise Ras-induced vulval development in Caenorhabditis elegans

J. Ahringer, F. Solari, 2000, Current Biology.

A systematic RNAi screen identifies a critical role for mitochondria in C. elegans longevity

Gary Ruvkun, Julie Ahringer, Raymond Y. N. Lee, 2003, Nature Genetics.

The Caenorhabditis elegans sex determining gene fem‐3 is regulated post‐transcriptionally.

J. Ahringer, J Kimble, J. Kimble, 1992, The EMBO journal.

modENCODE Project Genome by the Caenorhabditis elegans Integrative Analysis of the

Raymond K. Auerbach, Kevin Y. Yip, Stefan R. Henz, 2011 .

Rates of Behavior and Aging Specified by Mitochondrial Function During Development

Andrew G Fraser, Julie Ahringer, Cynthia Kenyon, 2002, Science.

An assessment of histone-modification antibody quality

Peter J. Park, Bing Ren, Peter V. Kharchenko, 2010, Nature Structural &Molecular Biology.

The age and origin of the Pacific islands : a geological overview

P. Raven, J. Ahringer, M. Malim, 2008 .

Title Comparative analysis of metazoan chromatin organization Permalink

William Stafford Noble, Stephen C. J. Parker, Maxwell W. Libbrecht, 2014 .

Cell Polarity in Eggs and Epithelia: Parallels and Diversity

J. Ahringer, D. Johnston, 2010, Cell.

CDK phosphorylation of SLD-2 is required for replication initiation and germline development in C. elegans

J. Ahringer, C. Bradshaw, Eva Zeiser, 2014, The Journal of cell biology.

H4K20me1 Contributes to Downregulation of X-Linked Genes for C. elegans Dosage Compensation

W. G. Kelly, A. Rechtsteiner, J. Ahringer, 2012, PLoS genetics.

Comparative assessment of fluorescent proteins for in vivo imaging in an animal model system

J. Ahringer, D. Dickinson, B. Goldstein, 2016, bioRxiv.

Physical and functional interaction between SET1/COMPASS complex component CFP-1 and a Sin3 HDAC complex

J. Ahringer, A. Appert, M. Spichty, 2018, bioRxiv.

The histone chaperone activity of SPT2 controls chromatin structure and function in Metazoa

C. Ponting, J. Ahringer, E. Miska, 2023, bioRxiv.

aPKC Cycles between Functionally Distinct PAR Protein Assemblies to Drive Cell Polarity

J. Ahringer, D. St Johnston, Lars Hubatsch, 2017, Developmental cell.

Stable Caenorhabditis elegans chromatin domains separate broadly expressed and developmentally regulated genes

J. Ahringer, T. Down, Kenneth Evans, 2016, Proceedings of the National Academy of Sciences.

Stable C. elegans chromatin domains separate broadly expressed and developmentally regulated genes

J. Ahringer, T. Down, Kenneth Evans, 2016, bioRxiv.

Turn to the worm!

J. Ahringer, 1997, Current opinion in genetics & development.

PAR proteins direct asymmetry of the cell cycle regulators Polo-like kinase and Cdc25

J. Ahringer, S. Moreno, D. Rivers, 2008, The Journal of cell biology.

The C. elegans Hook Protein, ZYG-12, Mediates the Essential Attachment between the Centrosome and Nucleus

J. Ahringer, M. Tsai, N. Bot, 2003, Cell.

Centrosome maturation and duplication in C. elegans require the coiled-coil protein SPD-2.

J. Ahringer, K. O’Connell, Peder Zipperlen, 2004, Developmental cell.

Chromatin regulation and sumoylation in the inhibition of Ras‐induced vulval development in C. elegans

A. Fraser, J. Ahringer, G. Poulin, 2006 .

Genome-wide RNAi screens in Caenorhabditis elegans: impact on cancer research

Julie Ahringer, J. Ahringer, G. Poulin, 2004, Oncogene.

Repression by the 3′ UTR of fem‐3, asex‐determining gene, relies on a ubiquitous mog‐dependent control in Caenorhabditis elegans

J. Ahringer, J. Kimble, S. Crittenden, 1998, The EMBO journal.

Widespread transposon co-option in the Caenorhabditis germline regulatory network

J. Ahringer, A. Dernburg, A. Appert, 2022, bioRxiv.

CDC-42 controls early cell polarity and spindle orientation in C. elegans

J. Ahringer, M. Gotta, Mary C. Abraham, 2001, Current Biology.

Asymmetrically Distributed C. elegans Homologs of AGS3/PINS Control Spindle Position in the Early Embryo

J. Ahringer, Y. Peterson, M. Gotta, 2003, Current Biology.

Distinct roles for Gα and Gβγ in regulating spindle position and orientation in Caenorhabditis elegans embryos

J. Ahringer, M. Gotta, 2001, Nature Cell Biology.

Microtubules are involved in anterior-posterior axis formation in C. elegans embryos

J. Ahringer, M. Tsai, Miao-Chih Tsai, 2007, The Journal of cell biology.

Asymmetry of Early Endosome Distribution in C. elegans Embryos

J. Ahringer, Robert Andrews, 2007, PloS one.

Identification of the C. elegans anaphase promoting complex subunit Cdc26 by phenotypic profiling and functional rescue in yeast

J. Ahringer, B. Habermann, W. Zachariae, 2007, BMC Developmental Biology.

G Proteins Are Required for Spatial Orientation of Early Cell Cleavages in C. elegans Embryos

J. Ahringer, R. Plasterk, R. Zwaal, 1996, Cell.

A Casein Kinase 1 and PAR Proteins Regulate Asymmetry of a PIP2 Synthesis Enzyme for Asymmetric Spindle Positioning

J. Ahringer, E. Zanin, M. Gotta, 2008, Developmental cell.

periodicDNA: an R/Bioconductor package to investigate k-mer periodicity in DNA

J. Ahringer, Jacques Serizay, 2021, F1000Research.

Systematic genetic interaction screens uncover cell polarity regulators and functional redundancy

Julie Ahringer, J. Ahringer, S. Grill, 2012, Nature Cell Biology.

A regulatory network of T-box genes and the even-skipped homologue vab-7 controls patterning and morphogenesis in C. elegans

J. Ahringer, A. Woollard, R. Pocock, 2004, Development.

The caenorhabditis elegans CDT-2 ubiquitin ligase is required for attenuation of EGFR signalling in vulva precursor cells

J. Ahringer, G. Poulin, 2010, BMC Developmental Biology.

J. Ahringer, David P. Welchman, L. Mathies, 2007, Developmental biology.

Involvement of fatty acid pathways and cortical interaction of the pronuclear complex in Caenorhabditis elegans embryonic polarity

J. Ahringer, C. Rappleye, R. Aroian, 2003, BMC Developmental Biology.

MosSCI and Gateway Compatible Plasmid Toolkit for Constitutive and Inducible Expression of Transgenes in the C. elegans Germline

J. Ahringer, E. Jorgensen, Christian Frøkjær-Jensen, 2011, PloS one.

Generating fragment density plots in R/Bioconductor with VplotR

Julie Ahringer, Jacques Serizay, J. Ahringer, 2021, J. Open Source Softw..

Maternal control of a zygotic patterning gene in Caenorhabditis elegans.

J. Ahringer, 1997, Development.

The Caenorhabditis elegans homolog of the Evi1 proto-oncogene, egl-43, coordinates G1 cell cycle arrest with pro-invasive gene expression during anchor cell invasion

J. Ahringer, A. Appert, A. Hajnal, 2020, PLoS genetics.

Axis determination in C. elegans: initiating and transducing polarity.

J. Ahringer, M. Gotta, Monica Gotta, 2001, Current opinion in genetics & development.

Materials and Methods Som Text Figs. S1 to S7 References Movies S1 to S7 Role of Subplate Neurons in Functional Maturation of Visual Cortical Columns

R Clay Reid, Prakash Kara, Patrick O Kanold, 2022 .

Involvement of fatty acid pathways and cortical interaction of the pronuclear complex in Caenorhabditis elegans embryonic polarity

J. Ahringer, C. Rappleye, R. Aroian, 2003, BMC Developmental Biology.

The histone chaperone SPT2 regulates chromatin structure and function in Metazoa

J. Ahringer, E. Miska, P. Alcón, 2024, Nature structural & molecular biology.

Using RNAi to knockdown gene function

J. Ahringer, 2006 .

Playing Ping Pong with Pins: Cortical and Microtubule-Induced Polarity

J. Ahringer, 2005, Cell.

Bmc Developmental Biology Identification of the C. Elegans Anaphase Promoting Complex Subunit Cdc26 by Phenotypic Profiling and Functional Rescue in Yeast

J. Ahringer, B. Habermann, W. Zachariae, 2022 .

Comparative assessment of ﬂuorescent proteins for in vivo imaging in an animal model system

J. Ahringer, S. Strome, D. Dickinson, 2022 .