J. Goldy

发表

Shared and distinct transcriptomic cell types across neocortical areas

Allan R. Jones, Ian R. Wickersham, Peter A. Groblewski, 2018, Nature.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

William Stafford Noble, Nancy R. Zhang, Stephen C. J. Parker, 2007, Nature.

An anatomically comprehensive atlas of the adult human brain transcriptome

Allan R. Jones, C. Koch, S. Horvath, 2012, Nature.

Transcriptional Landscape of the Prenatal Human Brain

Allan R. Jones, John W. Phillips, M. Gerstein, 2014, Nature.

Adult Mouse Cortical Cell Taxonomy Revealed by Single Cell Transcriptomics

Staci A. Sorensen, Tae Kyung Kim, C. Koch, 2016 .

Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays

William Stafford Noble, J. Stamatoyannopoulos, M. Hawrylycz, 2006, Nature Methods.

High-throughput localization of functional elements by quantitative chromatin profiling

J. Stamatoyannopoulos, M. Hawrylycz, J. Goldy, 2004, Nature Methods.

Neuropathological and transcriptomic characteristics of the aged brain

Terri L. Gilbert, S. Horvath, Amy Bernard, 2017, eLife.

Comprehensive transcriptional map of primate brain development

Allan R. Jones, Trygve E Bakken, John W. Phillips, 2016, Nature.

Conserved cell types with divergent features in human versus mouse cortex

Allan R. Jones, Brian R. Long, Trygve E Bakken, 2019, Nature.

Human cortical expansion involves diversification and specialization of supragranular intratelencephalic-projecting neurons

Brian R. Lee, Sergey L. Gratiy, Allan R. Jones, 2020, bioRxiv.

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

Evan Z. Macosko, A. S. Booeshaghi, Ricky S. Adkins, 2020, bioRxiv.

Enhancer viruses and a transgenic platform for combinatorial cell subclass-specific labeling

Garreck H. Lenz, Tae Kyung Kim, M. Mortrud, 2019 .

Prospective, brain-wide labeling of neuronal subclasses with enhancer-driven AAVs

Garreck H. Lenz, Tae Kyung Kim, M. Mortrud, 2019, bioRxiv.

Single-nucleus and single-cell transcriptomes compared in matched cortical cell types

Trygve E Bakken, John W. Phillips, T. Nguyen, 2018, PloS one.

Shared and distinct transcriptomic cell types across neocortical areas

Allan R. Jones, Ian R. Wickersham, Peter A. Groblewski, 2017, bioRxiv.

Adult Mouse Cortical Cell Taxonomy by Single Cell Transcriptomics

Christof Koch, Hongkui Zeng, Michael Hawrylycz, 2016, Nature Neuroscience.

An anatomic transcriptional atlas of human glioblastoma

Fuhui Long, Eric Olson, Nameeta Shah, 2018, Science.

Epigenetic landscape and AAV targeting of human neocortical cell classes

Trygve E Bakken, M. Mortrud, Hongkui Zeng, 2019 .

Functional Enhancer Elements Drive Subclass-Selective Expression from Mouse to Primate Neocortex

M. Mortrud, Hongkui Zeng, Bosiljka Tasic, 2020 .

Assaying the regulatory potential of mammalian conserved non-coding sequences in human cells

Shane J. Neph, A. Reymond, J. Stamatoyannopoulos, 2008, Genome Biology.

A multimodal cell census and atlas of the mammalian primary motor cortex

Satrajit S. Ghosh, Nicholas N. Foster, Evan Z. Macosko, 2020, Nature.

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

Christof Koch, Brian D. Aevermann, Richard H. Scheuermann, 2020, bioRxiv.

Toward an Integrated Classification of Cell Types: Morphoelectric and Transcriptomic Characterization of Individual GABAergic Cortical Neurons

Brian R. Lee, Staci A. Sorensen, Nathan W. Gouwens, 2020 .

Multi-omic Single-cell Atlas Reveals Broad Ex Vivo Effects on Human Immunobiology

J. Goldy, H. Bolouri, T. Torgerson, 2020, bioRxiv.

Comparative transcriptomics reveals human-specific cortical features

Brian R. Long, Trygve E Bakken, Fenna M. Krienen, 2022, bioRxiv.

Inter-individual variation in human cortical cell type abundance and expression

Trygve E Bakken, Kimberly A. Smith, J. Goldy, 2022, bioRxiv.

Comprehensive transcriptional map of primate brain development 1 2

Allan R. Jones, Trygve E Bakken, John W. Phillips, 2016 .

Morpho-electric and transcriptomic divergence of the layer 1 interneuron repertoire in human versus mouse neocortex

Brian R. Lee, Brian R. Long, Trygve E Bakken, 2022, bioRxiv.

Signature morpho-electric properties of diverse GABAergic interneurons in the human neocortex

Brian R. Lee, Brian R. Long, Trygve E Bakken, 2022, bioRxiv.

Transcriptomic cytoarchitecture reveals principles of human neocortex organization

Brian R. Long, Trygve E Bakken, Emily C. Gelfand, 2022, bioRxiv.

Single-cell RNA-seq uncovers shared and distinct axes of variation in dorsal LGN neurons in mice, non-human primates and humans

Trygve E Bakken, John W. Phillips, C. Koch, 2020, bioRxiv.

Conserved cell types with divergent features between human and mouse cortex

Christof Koch, Rafael Yuste, Brian D. Aevermann, 2018, bioRxiv.

A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation

Hongkui Zeng, Song-Lin Ding, Stephanie Mok, 2020, Cell.

Single-cell and single-nucleus RNA-seq uncovers shared and distinct axes of variation in dorsal LGN neurons in mice, non-human primates, and humans

Trygve E Bakken, John W. Phillips, T. Nguyen, 2021, eLife.

Comparative cellular analysis of motor cortex in human, marmoset and mouse

Evan Z. Macosko, Trygve E Bakken, Staci A. Sorensen, 2021, Nature.

Improving reliability and absolute quantification of human brain microarray data by filtering and scaling probes using RNA-Seq

Ed S Lein, Vilas Menon, John W. Phillips, 2014, BMC Genomics.

Multimodal analysis for human ex vivo studies shows extensive molecular changes from delays in blood processing

J. Goldy, H. Bolouri, T. Torgerson, 2020, iScience.

Comparative cellular analysis of motor cortex in human, marmoset and mouse

Evan Z. Macosko, Trygve E Bakken, Staci A. Sorensen, 2021, Nature.

A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

Evan Z. Macosko, A. S. Booeshaghi, Ricky S. Adkins, 2021, Nature.

Human neocortical expansion involves glutamatergic neuron diversification

Brian R. Lee, Sergey L. Gratiy, Allan R. Jones, 2021, Nature.

Local Connectivity and Synaptic Dynamics in Mouse and Human Neocortex

Staci A. Sorensen, John W. Phillips, Stephanie C. Seeman, 2021, bioRxiv.

Shared and distinct transcriptomic cell types across neocortical areas

Allan R. Jones, Ian R. Wickersham, Trygve E Bakken, 2017, bioRxiv.

Enhancer viruses for combinatorial cell-subclass-specific labeling

Garreck H. Lenz, Tae Kyung Kim, M. Mortrud, 2021, Neuron.

Functional enhancer elements drive subclass-selective expression from mouse to primate neocortex

M. Mortrud, Hongkui Zeng, Bosiljka Tasic, 2019, bioRxiv.

Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells

Brian R. Lee, Hanchuan Peng, Anton Arkhipov, 2020, Cell.

Equivalent high-resolution identification of neuronal cell types with single-nucleus and single-cell RNA-sequencing

Richard H. Scheuermann, Hongkui Zeng, Nicholas J. Schork, 2017, bioRxiv.

A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain

Brian R. Long, T. Nguyen, C. Slaughterbeck, 2023, bioRxiv.

Toward an integrated classification of neuronal cell types: morphoelectric and transcriptomic characterization of individual GABAergic cortical neurons

Brian R. Lee, Hong Gu, Christof Koch, 2020, bioRxiv.

Divergent and nonuniform gene expression patterns in mouse brain

Allan R. Jones, Ed S Lein, Michael J Hawrylycz, 2010, Proceedings of the National Academy of Sciences.

Integrated multimodal cell atlas of Alzheimer’s disease

Brian R. Lee, Brian R. Long, Ambrose J. Carr, 2023, bioRxiv.

Integrated multimodal cell atlas of Alzheimer’s disease

Brian R. Lee, Brian R. Long, Ambrose J. Carr, 2023, bioRxiv.

A multimodal atlas of the molecular and cellular changes to cortex driven by Alzheimer’s disease

M. Hawrylycz, Kimberly A. Smith, J. Goldy, 2022, Alzheimer's & Dementia.

Author Correction: Human neocortical expansion involves glutamatergic neuron diversification

Brian R. Lee, Sergey L. Gratiy, Allan R. Jones, 2022, Nature.

Author Correction: Human neocortical expansion involves glutamatergic neuron diversification

Brian R. Lee, Sergey L. Gratiy, Allan R. Jones, 2022, Nature.

Mutation of a putative protein degradation gene LITAF/SIMPLE in Charcot-Marie-Tooth disease 1C

J. Goldy, T. Bird, S. Scherer, 2003, Neurology.

Cell-type specific molecular signatures of aging revealed in a brain-wide transcriptomic cell-type atlas

Hongkui Zeng, Bosiljka Tasic, Zizhen Yao, 2023, bioRxiv.

Enhancer-AAVs allow genetic access to oligodendrocytes and diverse populations of astrocytes across species

Trygve E Bakken, Hongkui Zeng, Bosiljka Tasic, 2023, bioRxiv.

Conserved cell types with divergent features in human versus mouse cortex

Allan R. Jones, Brian R. Long, Trygve E Bakken, 2019, Nature.

Functional enhancer elements drive subclass-selective expression from mouse to primate neocortex

M. Mortrud, Hongkui Zeng, Bosiljka Tasic, 2021, Cell reports.

Functional enhancer elements drive subclass-selective expression from mouse to primate neocortex

M. Mortrud, Hongkui Zeng, Bosiljka Tasic, 2019, bioRxiv.

Title: Functional enhancer elements drive subclass-selective expression from mouse to primate neocortex

M. Mortrud, Hongkui Zeng, Bosiljka Tasic, 2020 .

Title: Functional enhancer elements drive subclass-selective expression from mouse to primate neocortex

M. Mortrud, Hongkui Zeng, Bosiljka Tasic, 2020 .

A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain

T. Nguyen, C. Slaughterbeck, M. Hawrylycz, 2023, Nature.

Mind matters: Placebo enhances reward learning in Parkinson’s disease

Erin Kendall Braun, Tae Kyung Kim, C. Koch, 2014, Nature Neuroscience.

Signature morphoelectric properties of diverse GABAergic interneurons in the human neocortex

Brian R. Lee, Trygve E Bakken, M. Mortrud, 2023, Science.

A suite of enhancer AAVs and transgenic mouse lines for genetic access to cortical cell types

Mariano I. Gabitto, Trygve E Bakken, Garreck H. Lenz, 2024, bioRxiv.