M. Zuker

发表

Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding.

A. E. Walter, D. Turner, J. Kim, 1994, Proceedings of the National Academy of Sciences of the United States of America.

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure.

J. Sabina, D. Turner, D. Mathews, 1999, Journal of molecular biology.

Prediction of RNA secondary structure by energy minimization.

M. Zuker, 1994, Methods in molecular biology.

Computer prediction of RNA structure.

M. Zuker, 1989, Methods in enzymology.

Prediction of hybridization and melting for double-stranded nucleic acids.

M. Zuker, R. Dimitrov, 2004, Biophysical journal.

Suboptimal sequence alignment in molecular biology. Alignment with error analysis.

M. Zuker, 1991, Journal of molecular biology.

On finding all suboptimal foldings of an RNA molecule.

M. Zuker, 1989, Science.

RNA secondary structures and their prediction

D. Sankoff, M. Zuker, 1984 .

"Well-determined" regions in RNA secondary structure prediction: analysis of small subunit ribosomal RNA.

M. Zuker, A. Jacobson, 1995, Nucleic acids research.

RNAML: a standard syntax for exchanging RNA information.

James W. Brown, R. Altman, M. Zuker, 2002, RNA.

Structural analysis by energy dot plot of a large mRNA.

M. Zuker, A. Jacobson, 1993, Journal of molecular biology.

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure.

D. Turner, D. Mathews, M. Zuker, 2004, Proceedings of the National Academy of Sciences of the United States of America.

RNA secondary structures and their prediction

David Sankoff, Michael Zuker, D. Sankoff, 1984 .

Secondary structure of the Tetrahymena ribosomal RNA intervening sequence: structural homology with fungal mitochondrial intervening sequences.

M. Zuker, I. Tinoco, T. Cech, 1983, Proceedings of the National Academy of Sciences of the United States of America.

Structural organization of the 16S ribosomal RNA from E. coli. Topography and secondary structure.

M. Zuker, P. Stiegler, P. Carbon, 1981, Nucleic acids research.

OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach.

M. Zuker, J. Rouillard, E. Gulari, 2003, Nucleic acids research.

Calculating nucleic acid secondary structure.

M. Zuker, 2000, Current opinion in structural biology.

Using reliability information to annotate RNA secondary structures.

M. Zuker, A. Jacobson, Michael Zuker, 1998, RNA.

Development of lead hammerhead ribozyme candidates against human rod opsin mRNA for retinal degeneration therapy.

M. Zuker, H. E. Abdelmaksoud, E. Yau, 2009, Experimental eye research.

Transcriptome-Wide Prediction of miRNA Targets in Human and Mouse Using FASTH

Mark A. Ragan, Michael Zuker, Chikako Ragan, 2009, PloS one.

Predicting common foldings of homologous RNAs.

M. Zuker, S. Le, 1991, Journal of biomolecular structure & dynamics.

Rna Secondary Structures and Their Prediction 1

Michael Zuker, M. Zuker, .

Cell Division: Key to Cellular Morphogenesis in the Fission Yeast, Schizosaccharomyces

G. B. Calleja, M. Zuker, Byron F. Johnson, 1982 .

Improved predictions of secondary structures for RNA.

D. Turner, M. Zuker, J. A. Jaeger, 1989, Proceedings of the National Academy of Sciences of the United States of America.

Predicting optimal and suboptimal secondary structure for RNA.

D. Turner, M. Zuker, J. A. Jaeger, 1990, Methods in enzymology.

Common structures of the 5' non-coding RNA in enteroviruses and rhinoviruses. Thermodynamical stability and statistical significance.

M. Zuker, S. Le, 1990, Journal of molecular biology.

A comparison of optimal and suboptimal RNA secondary structures predicted by free energy minimization with structures determined by phylogenetic comparison.

D. Turner, M. Zuker, J. A. Jaeger, 1991, Nucleic acids research.

The Giardia lamblia actin gene and the phylogeny of eukaryotes

M. Zuker, G. Drouin, Mário Moniz de Sá, 1995, Journal of Molecular Evolution.

Melting and chemical modification of a cyclized self-splicing group I intron: similarity of structures in 1 M Na+, in 10 mM Mg2+, and in the presence of substrate.

D. Turner, M. Zuker, J. A. Jaeger, 1990, Biochemistry.

Testing the exon theory of genes: the evidence from protein structure.

M. Zuker, W. Doolittle, A. Stoltzfus, 1994, Science.

An Improved Algorithm for RNA Secondary Structure Prediction

Christian N. S. Pedersen, Michael Zuker, Rune B. Lyngsø, 1999 .

RNA Secondary Structure Prediction

D. Turner, D. Mathews, M. Zuker, 2000 .

Heterogeneity of the sympathetic innervation of rat interscapular brown adipose tissue via intercostal nerves.

M. Zuker, D. Foster, F. Depocas, 1982, Canadian journal of physiology and pharmacology.

Combining temperature and force to study folding of an RNA hairpin.

M. Zuker, S. Tenenbaum, William Stephenson, 2014, Physical chemistry chemical physics : PCCP.

Heterozygous mutation in 5’-untranslated region of sepiapterin reductase gene (SPR) in a patient with dopa-responsive dystonia

M. Zuker, S. Hummel, N. Blau, 2004, Neurogenetics.

Conformational heterogeneity in hemoglobin as determined by picosecond fluorescence decay measurements of the tryptopran residues

M. Zuker, B. Alpert, A. Szabo, 1984 .

The Hepatitis B Virus Pregenome: Prediction of RNA Structure and Implications for the Emergence of Deletions

Michael Zuker, Ivo L. Hofacker, I. Hofacker, 2000, Intervirology.

Analyses of fission scars as permanent records of cell division in Schizosaccharomyces pombe.

G. B. Calleja, M. Zuker, B. Yoo, 1980, Journal of theoretical biology.

Morphological, Molecular, and Phylogenetic Characterization of Nosema ceranae, a Microsporidian Parasite Isolated from the European Honey Bee, Apis mellifera 1

M. Zuker, R. Gutell, C. Murphy, 2009, The Journal of eukaryotic microbiology.

On a unimodal sequence of binomial coefficients

Michael Zuker, Stephen M. Tanny, M. Zuker, 1974, Discrete Mathematics.

The sensitivity of eigenvalues under elementary matrix perturbations

Michael Zuker, Stephen M. Tanny, M. Zuker, 1987 .

European Mfold Server

Michael Zuker, Dirk Evers, M. Zuker, 1998, German Conference on Bioinformatics.

Delta function convolution method (DFCM) for fluorescence decay experiments

Michael Zuker, A. G. Szabo, M. Zuker, 1985 .

[Invited Lecture] The other folding problem: Algorithms and thermodynamics for nucleic acid secondary structure

Michael Zuker, M. Zuker, 1998, German Conference on Bioinformatics.

Predicting Nucleic Acid Hybridization and Melting Profiles

Michael Zuker, M. Zuker, 2003 .

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

Michael Zuker, P. Stiegler, M. Zuker, 1981, Nucleic Acids Res..

Analytic methods applied to a sequence of binomial coefficients

M. Zuker, S. Tanny, 1978, Discret. Math..

Mfold web server for nucleic acid folding and hybridization prediction

Michael Zuker, M. Zuker, 2003, Nucleic Acids Res..

Algorithms and Thermodynamics for RNA Secondary Structure Prediction: A Practical Guide

Michael Zuker, David H. Mathews, Douglas H. Turner, 1999 .

MicroRNA-responsive 'sensor' transgenes uncover Hox-like and other developmentally regulated patterns of vertebrate microRNA expression

Michael Zuker, Michael T. McManus, Gary Ruvkun, 2004, Nature Genetics.

Quantitative Prediction of miRNA-mRNA Interaction Based on Equilibrium Concentrations

Mark A. Ragan, Michael Zuker, Chikako Ragan, 2011, PLoS Comput. Biol..

The primary structure of the ribosomal A-protein (L12) from the halophilic eubacterium Haloanaerobium praevalens.

M. Zuker, A. T. Matheson, K. Louie, 1987, Biochimie.

The primary structure of the ribosomal A-protein (L12) from the moderate halophile NRCC 41227.

M. Zuker, M. Yaguchi, P. Falkenberg, 1986, Biochemistry and cell biology = Biochimie et biologie cellulaire.

UNAFold: software for nucleic acid folding and hybridization.

Michael Zuker, Nicholas R Markham, Nicholas R. Markham, 2008, Methods in molecular biology.

Internal loops in RNA secondary structure prediction

Christian N. S. Pedersen, Michael Zuker, Rune B. Lyngsø, 1999, RECOMB.

DINAMelt web server for nucleic acid melting prediction

Michael Zuker, Nicholas R. Markham, M. Zuker, 2005, Nucleic Acids Res..

The alignment of protein structures in three dimensions.

M. Zuker, R. Somorjai, M Zuker, 1989, Bulletin of mathematical biology.

Response : Introns and the Origin of Protein-Coding Genes

M. Zuker, W. Doolittle, A. Stoltzfus, 1995, Science.

Metrics on RNA Secondary Structures

Mike A. Steel, Vincent Moulton, Michael Zuker, 2000, J. Comput. Biol..

OligoArray: genome-scale oligonucleotide design for microarrays

Jean-Marie Rouillard, Christopher J. Herbert, Michael Zuker, 2002, Bioinform..

Fast evaluation of internal loops in RNA secondary structure prediction

Christian N. S. Pedersen, Michael Zuker, Rune B. Lyngsø, 1999, Bioinform..

RNA Secondary Structure Prediction

Michael Zuker, David H. Mathews, D. Turner, 2000 .

RNA Secondary Structure Prediction

Michael Zuker, David H Mathews, Douglas H Turner, 2007, Current protocols in nucleic acid chemistry.

A new site‐specific endonuclease from Neisseria cinerea

S. M. Martin, M. Zuker, L. P. Visentin, 1980, FEBS letters.

Fluorescence decay kinetics of the tryptophyl residues of myoglobin: effect of heme ligation and evidence for discrete lifetime components.

B Alpert, M. Zuker, B. Alpert, 1990, Biochemistry.

The mating system of a homothallic fission yeast

M. Zuker, Byron F. Johnson, G. Calleja, 2004, Molecular and General Genetics MGG.

Mating-type gene switching in a homothallic fission yeast

M. Zuker, Byron F. Johnson, G. Calleja, 1984 .

Some simple computational methods to improve the folding of large RNAs

Michael Zuker, Ann B. Jacobson, L. Good, 1984, Nucleic Acids Res..

Estimation of meiosis and sporulation efficiencies in the fission yeast by ascus analysis.

M. Zuker, G. Calleja, B. Johnson, 1979, Genetical research.

Resolution of heterogeneous fluorescence into component decay-associated excitation spectra. Application to subtilisins.

M. Zuker, A. Szabo, J. Ridgeway, 1990, Biophysical journal.

A new vitamin E analogue more active than α‐tocopherol in the rat curative myopathy bioassay

M. Zuker, K. Ingold, G. Burton, 1986 .

Measuring residue associations in protein structures. Possible implications for protein folding.

S Karlin, S. Karlin, M. Zuker, 1994, Journal of molecular biology.

22 – Comparative Studies on the Secondary Structure of the RNAs of Related RNA Coliphages

M. Zuker, A. Jacobson, A. Hirashima, 1987 .

Effect of spermidine on the conformation of bacteriophage MS2 RNA. Electron microscopy and computer modeling.

M. Zuker, A. Jacobson, H. Kumar, 1985, Journal of molecular biology.

The endogenous vascular elastase that governs development and progression of monocrotaline-induced pulmonary hypertension in rats is a novel enzyme related to the serine proteinase adipsin.

M. Zuker, F. Keeley, M. Rabinovitch, 1994, The Journal of clinical investigation.

Comparing RNA secondary structures using a relaxed base-pair score.

M. Zuker, P. Agius, Kristin P. Bennett, 2010, RNA.

Structure of a Bacillus subtilis endo-β-l,4-glucanase gene

M. Zuker, S. Baird, V. Seligy, 1986 .

Structural plasticity in RNA and its role in the regulation of protein translation in coliphage Q beta.

M. Zuker, A. Jacobson, C. H. Lin, 1998, Journal of molecular biology.

Large-scale selection synchrony of Tetrahymena thermophila.

M. Zuker, I. Smith, R. Hill, 1986, Journal of cell science.

Self-association of the cardiac fatty acid binding protein. Influence on membrane-bound, fatty acid dependent enzymes.

M. Zuker, N. Fournier, I. Smith, 1983, Biochemistry.

Systematic Search for Orthogonal Systems in the Calibrations of Submultiples and Multiples of the Unit of Mass

M. Zuker, G. Mihailov, M. Romanowski, 1980 .

Structure-function relationship of Rous sarcoma virus leader RNA.

M. Zuker, J. Darlix, P. Spahr, 1982, Nucleic acids research.

22 Predicting RNA Secondary Structure

Michael Zuker, David H. Mathews, Douglas H. Turner, 2006 .

Development of lead hammerhead ribozyme candidates against human rod opsin mRNA for retinal degeneration therapy.

M. Zuker, H. E. Abdelmaksoud, E. Yau, 2009, Experimental eye research.

The measurement of rectal and testis temperature in conscious mice, with observations on the effect of direct heating.

M. Zuker, A. Cairnie, R. Harding, 1980, Physics in medicine and biology.

Observation of a Possible Pause Mutant in the Synthesis and Expression of Synthetic T4-Lysozyme in E. Coli

M. Zuker, M. Yaguchi, S. Narang, 1988 .

OBSERVATIrn OF A POOSIBrn PAIEE K1rANl' IN 'lHE SYNIHESIS AND EXPRESSIrn

M. Zuker, M. Yaguchi, J. Michniewicz, 1988 .

Amino-Terminal Sequences of Ribosomal Proteins from the 30 S Subunit of Archaebacterium Halobacterium cutirubrum

M. Zuker, M. Yaguchi, A. T. Matheson, 1982 .

RNA Secondary Structure Prediction

D. Turner, D. Mathews, M. Zuker, 2007, Current protocols in nucleic acid chemistry.