R. Dondi

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Covering a Graph with Clubs

Riccardo Dondi, Giancarlo Mauri, Italo Zoppis, 2019, J. Graph Algorithms Appl..

Clique Editing to Support Case vs Control Discrimination

G. Mauri, R. Dondi, I. Zoppis, 2016 .

On the Fixed Parameter Tractability and Approximability of the Minimum Error Correction Problem

Paola Bonizzoni, Riccardo Dondi, Yuri Pirola, 2015, CPM.

Beyond evolutionary trees

Riccardo Dondi, Yuri Pirola, Tao Jiang, 2010, Natural Computing.

The Comparison of Phylogenetic Networks: Algorithms and Complexity

P. Bonizzoni, G. D. Vedova, G. Mauri, 2008 .

Computational Methods for Resting-State EEG of Patients With Disorders of Consciousness

G. Mauri, R. Dondi, I. Zoppis, 2019, Front. Neurosci..

MUL-tree pruning for consistency and optimal reconciliation - complexity and algorithms

R. Dondi, N. El-Mabrouk, Mathieu Gascon, 2022, Theor. Comput. Sci..

Temporal networks in biology and medicine: a survey on models, algorithms, and tools

R. Dondi, M. Cannataro, P. Guzzi, 2022, Network Modeling Analysis in Health Informatics and Bioinformatics.

A Clustering Algorithm for Planning the Integration Process of a Large Number of Conceptual Schemas

P. Bonizzoni, R. Dondi, C. Batini, 2015, Journal of Computer Science and Technology.

Finding disjoint paths on edge-colored graphs: more tractability results

R. Dondi, F. Sikora, 2017, Journal of Combinatorial Optimization.

Kernel Machines: Applications

Riccardo Dondi, Giancarlo Mauri, Italo Zoppis, 2019, Encyclopedia of Bioinformatics and Computational Biology.

Robust Conclusions in Mass Spectrometry Analysis

Riccardo Dondi, Giancarlo Mauri, Italo Zoppis, 2015, ICCS.

Experimental Analysis of a New Algorithm for Partial Haplotype Completion

Paola Bonizzoni, Riccardo Dondi, Gianluca Della Vedova, 2005, International Conference on Computational Science.

Kernel Methods: Support Vector Machines

Riccardo Dondi, Giancarlo Mauri, Italo Zoppis, 2019, Encyclopedia of Bioinformatics and Computational Biology.

Kernel Machines: Introduction

Riccardo Dondi, Giancarlo Mauri, Italo Zoppis, 2019, Encyclopedia of Bioinformatics and Computational Biology.

Dense Sub-networks Discovery in Temporal Networks

Riccardo Dondi, Mohammad Mehdi Hosseinzadeh, R. Dondi, 2021, SN Computer Science.

A novel algorithm for finding top-k weighted overlapping densest connected subgraphs in dual networks

Riccardo Dondi, Pietro H. Guzzi, Mohammad Mehdi Hosseinzadeh, 2021, Applied Network Science.

Top-k Connected Overlapping Densest Subgraphs in Dual Networks pdf

Riccardo Dondi, Pietro Hiram Guzzi, Mohammad Mehdi Hosseinzadeh, 2020, COMPLEX NETWORKS.

Reconciling a gene tree to a species tree under the duplication cost model

Paola Bonizzoni, Riccardo Dondi, Gianluca Della Vedova, 2005, Theor. Comput. Sci..

HapCol: accurate and memory-efficient haplotype assembly from long reads

Paola Bonizzoni, Riccardo Dondi, Yuri Pirola, 2016, Bioinform..

Minimum Leaf Removal for Reconciliation: Complexity and Algorithms

Riccardo Dondi, Nadia El-Mabrouk, R. Dondi, 2012, CPM.

Reconciling Gene Trees to a Species Tree

Paola Bonizzoni, Riccardo Dondi, Gianluca Della Vedova, 2003, CIAC.

Complexity and Algorithms for MUL-Tree Pruning

Riccardo Dondi, Nadia El-Mabrouk, Mathieu Gascon, 2021, IWOCA.

Approximating the correction of weighted and unweighted orthology and paralogy relations

R. Dondi, N. El-Mabrouk, Manuel Lafond, 2017, Algorithms for Molecular Biology.

Orthology Correction for Gene Tree Reconstruction: Theoretical and Experimental Results

Riccardo Dondi, Giancarlo Mauri, Italo Zoppis, 2017, ICCS.

Correction of Weighted Orthology and Paralogy Relations - Complexity and Algorithmic Results

Riccardo Dondi, Nadia El-Mabrouk, Manuel Lafond, 2016, WABI.

The link between orthology relations and gene trees: a correction perspective

R. Dondi, N. El-Mabrouk, Manuel Lafond, 2016, Algorithms for Molecular Biology.

Gene tree correction for reconciliation and species tree inference

Riccardo Dondi, Krister M. Swenson, Nadia El-Mabrouk, 2012, Algorithms for Molecular Biology.

Approximating the correction of weighted and unweighted orthology and paralogy relations

Riccardo Dondi, Nadia El-Mabrouk, Manuel Lafond, 2017, Algorithms for Molecular Biology.

The link between orthology relations and gene trees: a correction perspective

Riccardo Dondi, Nadia El-Mabrouk, Manuel Lafond, 2016, Algorithms for Molecular Biology.

Covering Pairs in Directed Acyclic Graphs

Paola Bonizzoni, Riccardo Dondi, Yuri Pirola, 2013, Comput. J..

The Haplotyping problem: An overview of computational models and solutions

Paola Bonizzoni, Riccardo Dondi, Jing Li, 2003, Journal of Computer Science and Technology.

Parameterized complexity of k-anonymity: hardness and tractability

Paola Bonizzoni, Riccardo Dondi, Yuri Pirola, 2009, Journal of Combinatorial Optimization.

The binary perfect phylogeny with persistent characters pdf

Paola Bonizzoni, Riccardo Dondi, Chiara Braghin, 2011, Theor. Comput. Sci..

Exemplar Longest Common Subsequence

Paola Bonizzoni, Riccardo Dondi, Guillaume Fertin, 2006, IEEE/ACM Transactions on Computational Biology & Bioinformatics.

Comparing incomplete sequences via longest common subsequence

Riccardo Dondi, Italo Zoppis, Mauro Castelli, 2019, Theor. Comput. Sci..

The Longest Filled Common Subsequence Problem

Riccardo Dondi, Giancarlo Mauri, Italo Zoppis, 2017, CPM.

The constrained shortest common supersequence problem

Riccardo Dondi, R. Dondi, 2013, J. Discrete Algorithms.

On the parameterized complexity of the repetition free longest common subsequence problem

Paola Bonizzoni, Riccardo Dondi, Guillaume Blin, 2012, Inf. Process. Lett..

Variants of constrained longest common subsequence

Paola Bonizzoni, Riccardo Dondi, Yuri Pirola, 2009, Inf. Process. Lett..

A PTAS for the Maximum Consensus Clustering

Paola Bonizzoni, Riccardo Dondi, Giancarlo Mauri, 2006 .

A PTAS for the Minimum Consensus Clustering Problem with a Fixed Number of Clusters pdf

Paola Bonizzoni, Riccardo Dondi, Gianluca Della Vedova, 2009, ICTCS.

On the Approximation of Correlation Clustering and Consensus Clustering

Paola Bonizzoni, Riccardo Dondi, Tao Jiang, 2008, J. Comput. Syst. Sci..

Parameterized Tractability of the Maximum-Duo Preservation String Mapping Problem

Riccardo Dondi, Stefano Beretta, Mauro Castelli, 2015, Theor. Comput. Sci..

Complexity issues in vertex-colored graph pattern matching

Riccardo Dondi, Guillaume Fertin, Stéphane Vialette, 2011, J. Discrete Algorithms.

When and How the Perfect Phylogeny Model Explains Evolution

Paola Bonizzoni, Riccardo Dondi, Gianluca Della Vedova, 2014, Discrete and Topological Models in Molecular Biology.

Stimulating knowledge discovery and sharing

Riccardo Dondi, Giorgio De Michelis, Alessandra Agostini, 2003, GROUP.

A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence

Riccardo Dondi, Eduardo D. Sontag, Alex Zelikovsky, 2007, WABI.

On the Tractability of Covering a Graph with 2-Clubs

Riccardo Dondi, Manuel Lafond, R. Dondi, 2019, Algorithmica.

On the Minimum Error Correction Problem for Haplotype Assembly in Diploid and Polyploid Genomes

Paola Bonizzoni, Riccardo Dondi, Yuri Pirola, 2016, J. Comput. Biol..

Parameterized Complexity and Approximation Issues for the Colorful Components Problems

Riccardo Dondi, Florian Sikora, R. Dondi, 2016, CiE.

Restricted and Swap Common Superstring: A Multivariate Algorithmic Perspective

P. Bonizzoni, G. Mauri, R. Dondi, 2015, Algorithmica.

Duplication-Loss Genome Alignment: Complexity and Algorithm

Riccardo Dondi, Nadia El-Mabrouk, Billel Benzaid, 2013, LATA.

Anonymizing binary and small tables is hard to approximate

Paola Bonizzoni, Riccardo Dondi, Gianluca Della Vedova, 2011, J. Comb. Optim..

Minimum Factorization Agreement of Spliced ESTs

Paola Bonizzoni, Riccardo Dondi, Yuri Pirola, 2009, WABI.

The Longest Haplotype Reconstruction Problem Revisited

Riccardo Dondi, R. Dondi, 2009, FCT.

The k-Anonymity Problem Is Hard

Paola Bonizzoni, Riccardo Dondi, Gianluca Della Vedova, 2007, FCT.

Fingerprint Clustering with Bounded Number of Missing Values

Paola Bonizzoni, Riccardo Dondi, Giancarlo Mauri, 2010, Algorithmica.

Fingerprint Clustering with Bounded Number of Missing Values

Paola Bonizzoni, Riccardo Dondi, Giancarlo Mauri, 2006, CPM.

Correlation Clustering and Consensus Clustering

Paola Bonizzoni, Riccardo Dondi, Tao Jiang, 2005, ISAAC.

Finding disjoint paths on edge-colored graphs: more tractability results

Riccardo Dondi, Florian Sikora, R. Dondi, 2016, J. Comb. Optim..

Finding Disjoint Paths on Edge-Colored Graphs: A Multivariate Complexity Analysis

Riccardo Dondi, Florian Sikora, R. Dondi, 2016, COCOA.

Maximum Disjoint Paths on Edge-Colored Graphs: Approximability and Tractability

P. Bonizzoni, R. Dondi, Yuri Pirola, 2012, Algorithms.

Inferring (Biological) Signal Transduction Networks via Transitive Reductions of Directed Graphs

Riccardo Dondi, Eduardo D. Sontag, Bhaskar DasGupta, 2008, Algorithmica.

Fixed-parameter algorithms for scaffold filling

Riccardo Dondi, Laurent Bulteau, Anna Paola Carrieri, 2014, Theor. Comput. Sci..

Maximum Motif Problem in Vertex-Colored Graphs

Riccardo Dondi, Guillaume Fertin, Stéphane Vialette, 2009, CPM.

Colorful path detection in vertex-colored temporal

R. Dondi, M. Hosseinzadeh, 2023, Network Science.

Untangling temporal graphs of bounded degree

R. Dondi, 2023, Theor. Comput. Sci..

An FTP Algorithm for Temporal Graph Untangling

R. Dondi, Manuel Lafond, 2023, ArXiv.

Insights into the Complexity of Disentangling Temporal Graphs

R. Dondi, 2022, ICTCS.

Genetic Algorithms for Finding Episodes in Temporal Networks

Riccardo Dondi, Mauro Castelli, Mohammad Mehdi Hosseinzadeh, 2020, KES.

Hardness and tractability of the γ-Complete Subgraph problem

R. Dondi, M. Hosseinzadeh, Ambroise Baril, 2021, Inf. Process. Lett..

On the tractability of finding disjoint clubs in a network

Riccardo Dondi, Giancarlo Mauri, Italo Zoppis, 2019, Theor. Comput. Sci..

Top k 2-Clubs in a Network: A Genetic Algorithm

Riccardo Dondi, Giancarlo Mauri, Sara Manzoni, 2019, ICCS.

Covering with Clubs: Complexity and Approximability pdf

Riccardo Dondi, Giancarlo Mauri, Italo Zoppis, 2018, IWOCA.

Optimizing Social Interaction - A Computational Approach to Support Patient Engagement

Riccardo Dondi, Giancarlo Mauri, Italo Zoppis, 2018, HEALTHINF.

Distributed Heuristics for Optimizing Cohesive Groups: A Support for Clinical Patient Engagement in Social Network Analysis

Riccardo Dondi, Giancarlo Mauri, Italo Zoppis, 2018, 2018 26th Euromicro International Conference on Parallel, Distributed and Network-based Processing (PDP).

Patient Engagement: Theoretical and Heuristic Approaches for Supporting the Clinical Practice.

Riccardo Dondi, Giancarlo Mauri, Sara Manzoni, 2018 .

Algorithmic Aspects in Information and Management

Riccardo Dondi, Giancarlo Mauri, Guillaume Fertin, 2016, Lecture Notes in Computer Science.

Pure Parsimony Xor Haplotyping

Paola Bonizzoni, Riccardo Dondi, Yuri Pirola, 2009, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Complexity Insights of the Minimum Duplication Problem

Paola Bonizzoni, Riccardo Dondi, Romeo Rizzi, 2012, SOFSEM.

Finding disjoint paths on edge-colored graphs: more tractability results

R. Dondi, F. Sikora, 2016, Journal of Combinatorial Optimization.

Reconciling multiple genes trees via segmental duplications and losses pdf

Riccardo Dondi, Manuel Lafond, Céline Scornavacca, 2018, Algorithms for Molecular Biology.

Resolving Rooted Triplet Inconsistency by Dissolving Multigraphs

Riccardo Dondi, Anthony Wirth, Andrew Chester, 2013, TAMC.

A randomized PTAS for the minimum Consensus Clustering with a fixed number of clusters

Paola Bonizzoni, Riccardo Dondi, Gianluca Della Vedova, 2012, Theor. Comput. Sci..

Exemplar Longest Common Subsequence

P. Bonizzoni, G.D. Vedova, R. Dondi, 2006, IEEE/ACM Transactions on Computational Biology and Bioinformatics.