E. Gilles

发表

On Nonlinear Systems with Poorly Behaved Zero Dynamics

M. Morari, F. Doyle, F. Allgower, 1992, 1992 American Control Conference.

Metabolic network structure determines key aspects of functionality and regulation

S. Schuster, J. Stelling, E. Gilles, 2002, Nature.

Multistability of signal transduction motifs.

E. Gilles, S. Klamt, J. Sáez-Rodríguez, 2008, IET systems biology.

Optimal feeding strategies by adaptive mesh selection for fed-batch bioprocesses

E. Gilles, W. Waldraff, R. King, 1997 .

Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors

E. Gilles, B. Schoeberl, Claudia Eichler-Jonsson, 2002, Nature Biotechnology.

Robustness properties of circadian clock architectures.

J. Stelling, F. Doyle, E. Gilles, 2004, Proceedings of the National Academy of Sciences of the United States of America.

A benchmark for methods in reverse engineering and model discrimination: problem formulation and solutions.

F. Doyle, F. Allgöwer, E. Gilles, 2004, Genome research.

Analysis of an apoptotic core model focused on experimental design using artificial data.

E. Gilles, T. Sauter, R. Schlatter, 2009, IET systems biology.

Object-oriented modeling of distillation processes

Achim Kienle, Michael Zeitz, E. D. Gilles, 1999 .

Bistability Analyses of a Caspase Activation Model for Receptor-induced Apoptosis*

F. Allgöwer, E. Gilles, E. Bullinger, 2004, Journal of Biological Chemistry.

Dissecting the puzzle of life: modularization of signal transduction networks

Julio Saez-Rodriguez, Andreas Kremling, Ernst Dieter Gilles, 2005, Comput. Chem. Eng..

Analysis of two-component signal transduction by mathematical modeling using the KdpD/KdpE system of Escherichia coli.

E. Gilles, A. Kremling, R. Heermann, 2004, Bio Systems.

The organization of metabolic reaction networks: a signal-oriented approach to cellular models.

E. Gilles, A. Kremling, J. Lengeler, 2000, Metabolic engineering.

The organization of metabolic reaction networks. III. Application for diauxic growth on glucose and lactose.

E. Gilles, K. Bettenbrock, A. Kremling, 2001, Metabolic engineering.

The organization of metabolic reaction networks. II. Signal processing in hierarchical structured functional units.

E. Gilles, A. Kremling, 2001, Metabolic engineering.

Time hierarchies in the Escherichia coli carbohydrate uptake and metabolism.

E. Gilles, K. Bettenbrock, A. Kremling, 2004, Bio Systems.

Reinitialization of DAE's after discontinuities

E. Gilles, W. Marquardt, C. Majer, 1995 .

Stabilization of an Unstable Distillation Column

M. Morari, E. Gilles, A. Kienle, 1998 .

Mathematical modeling of complex regulatory networks

J. Stelling, E. Gilles, 2004, IEEE Transactions on NanoBioscience.

Metabolic design based on a coupled gene expression-metabolic network model of tryptophan production in Escherichia coli.

E. Gilles, J. Schmid, K. Mauch, 2004, Metabolic engineering.

A Quantitative Approach to Catabolite Repression in Escherichia coli*

Andreas Kremling, Thomas Sauter, E. Gilles, 2006, Journal of Biological Chemistry.

Modeling the electron transport chain of purple non-sulfur bacteria

E. Gilles, S. Klamt, R. Ghosh, 2008, Molecular systems biology.

Thermodynamically feasible kinetic models of reaction networks.

E. Gilles, M. Ederer, 2007, Biophysical journal.

Thermodynamic-Kinetic Modeling and Electrical Engineering

E. Gilles, M. Ederer, 2007 .

Morphological characterization of filamentous microorganisms in submerged cultures by on-line digital image analysis and pattern recognition.

E. Gilles, S. Treskatis, V. Orgeldinger, 1997, Biotechnology and bioengineering.

Multiple filter methods for detection of hazardous states in an industrial plant

E. Gilles, R. King, 1990 .

Steady-state multiplicities in reactive distillation columns for the production of fuel ethers MTBE and TAME: theoretical analysis and experimental verification

E. Gilles, K. Sundmacher, U. Hoffmann, 1999 .

State estimation in batch crystallization using reduced population models

Ernst Dieter Gilles, S. Motz, E. Gilles, 2008 .

Mathematical Modeling of Signaling Cascades: Principles and Future Prospects

E. Gilles, B. Schoeberl, G. Müller, 2004 .

Some new approaches for controlling complex processes in chemical engineering

Ernst Dieter Gilles, E. Gilles, 1986 .

Using chemical reaction network theory to discard a kinetic mechanism hypothesis.

E D Gilles, E. Gilles, J. Raisch, 2005, Systems biology.

Computing consistent initial conditions for differential-algebraic equations

Wolfgang Marquardt, Ernst Dieter Gilles, A. Kröner, 1992 .

Automatic control of the simulated moving bed process for C8 aromatics separation using asymptotically exact input/output-linearization

Ernst Dieter Gilles, Ernst Kloppenburg, E. Gilles, 1999 .

An integrative model links multiple inputs and signaling pathways to the onset of DNA synthesis in hepatocytes

Steffen Klamt, Ursula Klingmüller, E. Gilles, 2012, The FEBS journal.

Integral approximation : an approach to reduced models for particulate processes

E. Gilles, S. Motz, S. Mannal, 2004 .

Logical network of genotoxic stress-induced NF-κB signal transduction predicts putative target structures for therapeutic intervention strategies

E. Gilles, S. Klamt, M. Naumann, 2009, Advances and applications in bioinformatics and chemistry : AABC.

Dynamics of Proximal Signaling Events after TCR/CD8-Mediated Induction of Proliferation or Apoptosis in Mature CD8+ T Cells1

Julio Saez-Rodriguez, Burkhart Schraven, Luca Simeoni, 2008, The Journal of Immunology.

Multivariable control of two coupled distillation columns for multicomponent separation on a pilot plant scale

Ernst Dieter Gilles, L. Lang, E. Gilles, 1989 .

Guiding ships on waterways

R. Neul, Ernst Dieter Gilles, U. Kabatek, 1994 .

A coherent kinetic model of sensing and response in halobacterium salinarium phototaxis based on the mechanism of flagellar motor switching

E. Gilles, D. Oesterhelt, W. Marwan, 2004 .

Relaxation oscillations in chemical reactors

E. Gilles, G. Eigenberger, W. Ruppel, 1978 .

Metabolic networks : Biology meets engineering sciences

J. Stelling, E. Gilles, K. Bettenbrock, 2005 .

Yield Effects in Single and Coupled Nonlinear Thermokinetic Reaction Systems

E. Gilles, A. Kienle, M. Mangold, 2002 .

Signal processing and flagellar motor switching during phototaxis of Halobacterium salinarum.

Wolfgang Marwan, Ernst Dieter Gilles, Dieter Oesterhelt, 2003, Genome research.

Correlation between Growth Rates, EIIA Crr Phosphorylation, and Intracellular Cyclic AMP Levels in Escherichia coli K-12 (cid:1)

E. Gilles, K. Bettenbrock, A. Kremling, 2007 .

Multiple Steady States in a Reactive Distillation Column for the Production of the Fuel Ether TAME I. Theoretical Analysis

E. Gilles, A. Kienle, K. Mohl, 1998 .

Intensified Production of Fuel Ethers in Reactive Distillation Columns - Experimental Validation of Predicted Multiple Steady States

E. Gilles, K. Sundmacher, U. Hoffmann, 1997 .

Nonlinear control of an industrial reactive distillation column

E. Gilles, A. Kienle, K. Mohl, 2001 .

Model‐Based Monitoring and Control of a Monoclonal Antibody Production Process a

E. Gilles, W. Waldraff, W. Noé, 1996, Annals of the New York Academy of Sciences.

Host-pathogen systems biology: logical modelling of hepatocyte growth factor and Helicobacter pylori induced c-Met signal transduction

Steffen Klamt, Ernst Dieter Gilles, Michael Naumann, 2008, BMC Systems Biology.

Domain oriented modeling and model reduction

Frank Allgöwer, E. D. Gilles, H. Conzelmann, 2004 .

Systems Biology - A Glossary from two perspectives

Frank Allgöwer, E. D. Gilles, Thomas Sauter, 2002 .

Model Reduction in Biological Systems Applied to a MAP Kinase Model

Frank Allgöwer, E. D. Gilles, Thomas Sauter, 2002 .

Stochastic resonance in a thermokinetic reaction system

E. Gilles, A. Münster, K. Zeyer, 2002 .

Bemerkungen zu der Arbeit : an analysis of chemical reactor stability and control

Ernst Dieter Gilles, H. Hofmann, E. Gilles, 1961 .

The behavior of the iron(III)-catalyzed oxidation of ethanol by hydrogen peroxide in a fed-batch reactor

Ernst Dieter Gilles, Michael Mangold, S. Pushpavanam, 2000 .

Non-linear wave propagation and model reduction of the fixed-bed reactor

E. Gilles, U. Epple, 1981 .

A general criterion to define runaway limits in chemical reactors

Giuseppe Maschio, Ernst Dieter Gilles, J. Cano, 2003 .

A Logical Model Provides Insights into T Cell Receptor Signaling

Steffen Klamt, Julio Saez-Rodriguez, Ernst Dieter Gilles, 2007, PLoS Comput. Biol..

A methodology for the structural and functional analysis of signaling and regulatory networks

Steffen Klamt, Julio Saez-Rodriguez, Ernst Dieter Gilles, 2006, BMC Bioinformatics.

Modular analysis of signal transduction networks

A. Kremling, E.D. Gilles, J. Saez-Rodriguez, 2004, IEEE Control Systems.

Automatic decomposition of kinetic models of signaling networks minimizing the retroactivity among modules

Julio Saez-Rodriguez, Ernst Dieter Gilles, Martin Ginkel, 2008, ECCB.

Minimal cut sets in biochemical reaction networks

Steffen Klamt, Ernst Dieter Gilles, E. Gilles, 2004, Bioinform..

On the dynamics of the circulation loop reactor : numerical methods and analysis

Achim Kienle, Ernst Dieter Gilles, G. Lauschke, 1995 .

Development, analysis and validation of population models for continuous and batch crystallizers

Ernst Dieter Gilles, S. Motz, A. Gerstlauer, 2002 .

Characterization of pellet morphology during submerged growth of Streptomyces tendae by image analysis

U. Reichl, E. Gilles, U. Reichl, 1992, Biotechnology and bioengineering.

Structural and functional analysis of cellular networks with CellNetAnalyzer

Steffen Klamt, Julio Saez-Rodriguez, Ernst Dieter Gilles, 2007, BMC Systems Biology.

Correlation between Growth Rates, EIIACrr Phosphorylation, and Intracellular Cyclic AMP Levels in Escherichia coli K-12

Andreas Kremling, Thomas Sauter, E. Gilles, 2007, Journal of bacteriology.

A network theory for the structured modelling of chemical processes

Ernst Dieter Gilles, Michael Mangold, S. Motz, 2002 .

Mathematical modeling and analysis of insulin clearance in vivo

Ernst Dieter Gilles, Markus Koschorreck, E. Gilles, 2008, BMC Systems Biology.

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

Hiroaki Kitano, Masaru Tomita, Peter J. Hunter, 2003, Bioinform..

Exact model reduction of combinatorial reaction networks

Ernst Dieter Gilles, Holger Conzelmann, Dirk Fey, 2008, BMC Systems Biology.

Reduced modeling of signal transduction – a modular approach

Michael Ederer, Ernst Dieter Gilles, Holger Conzelmann, 2007, BMC Bioinformatics.

A domain-oriented approach to the reduction of combinatorial complexity in signal transduction networks

Julio Saez-Rodriguez, Boris N. Kholodenko, Ernst Dieter Gilles, 2006, BMC Bioinformatics.

Visual setup of logical models of signaling and regulatory networks with ProMoT

Steffen Klamt, Julio Saez-Rodriguez, Ernst Dieter Gilles, 2006, BMC Bioinformatics.

A quantitative model of the switch cycle of an archaeal flagellar motor and its sensory control.

Wolfgang Marwan, Ernst Dieter Gilles, Dieter Oesterhelt, 2005, Biophysical journal.

An engineering perspective on nonlinear H∞-control

Frank Allgöwer, Ernst Dieter Gilles, Ansgar Rehm, 1994 .

An engineering perspective on nonlinear H/sub /spl infin// control

F. Allgower, A. Rehm, E.D. Gilles, 1994, Proceedings of 1994 33rd IEEE Conference on Decision and Control.

Analysis of global control of Escherichia coli carbohydrate uptake

Andreas Kremling, Ernst Dieter Gilles, Katja Bettenbrock, 2007, BMC Systems Biology.

A feed-forward loop guarantees robust behavior in Escherichia coli carbohydrate uptake

Andreas Kremling, Ernst Dieter Gilles, Katja Bettenbrock, 2008, Bioinform..

Signal transduction and regulation in bacteria

Ernst Dieter Gilles, E. Gilles, 2006, Comput. Chem. Eng..

The Galactose Switch in Kluyveromyces lactis Depends on Nuclear Competition between Gal4 and Gal1 for Gal80 Binding*

J. Stelling, E. Gilles, H. Lilie, 2006, Journal of Biological Chemistry.

Synthesis of isothermal fluid-fluid two-phase CSTR networks

Ernst Dieter Gilles, T. Obertopp, E. Gilles, 1998 .

Nonlinear computation in DIVA — methods and applications

Achim Kienle, Ernst Dieter Gilles, Michael Mangold, 2000 .

An Approach for Dividing Models of Biological Reaction Networks into Functional Units

Frank Allgöwer, Michael Ederer, Ernst Dieter Gilles, 2003, Simul..

Nutritional control of nikkomycin and juglomycin production by Streptomyces tendae in continuous culture

E. Gilles, H. Wolf, R. King, 2004, Applied Microbiology and Biotechnology.

Thermodynamic Constraints in Kinetic Modeling: Thermodynamic‐Kinetic Modeling in Comparison to Other Approaches

Ernst Dieter Gilles, Michael Ederer, E. Gilles, 2008 .

Dynamics of the direct methanol fuel cell (DMFC): experiments and model-based analysis

Kai Sundmacher, Ernst Dieter Gilles, Martin Ginkel, 2001 .

Microaerophilic Cooperation of Reductive and Oxidative Pathways Allows Maximal Photosynthetic Membrane Biosynthesis in Rhodospirillum rubrum

Hartmut Grammel, E. Gilles, R. Ghosh, 2003, Applied and Environmental Microbiology.

Calculability analysis in underdetermined metabolic networks illustrated by a model of the central metabolism in purple nonsulfur bacteria.

Steffen Klamt, Stefan Schuster, Ernst Dieter Gilles, 2002, Biotechnology and bioengineering.

Optimization of a reactor network for ethylene glycol synthesis

Achim Kienle, E. D. Gilles, K. D. Mohl, 1999 .

Modular Analysis of Signal

Julio Saez-Rodriguez, Andreas Kremling, Ernst Dieter Gilles, 2004 .

ALC: automated reduction of rule-based models

Ernst Dieter Gilles, Markus Koschorreck, E. Gilles, 2008, BMC Systems Biology.

FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps

Steffen Klamt, Jörg Stelling, Ernst Dieter Gilles, 2003, Bioinform..

Nonlinear control of a reactive distillation column

Achim Kienle, Ernst Dieter Gilles, K. D. Mohl, 2003 .

Some aspects of integrated process operation

Achim Kienle, Ernst Dieter Gilles, M. Storz, 1996 .

PROCESS DESIGN AND CONTROL FOR QUALITY ASSURANCE

Ernst Dieter Gilles, M. Storz, M. Friedrich, 1994 .

Nonlinear dynamics of reactive distillation processes for the production of fuel ethers

Achim Kienle, Kai Sundmacher, Ernst Dieter Gilles, 1997 .

The Glansdorff-Prigogine stability criterion for biochemical reaction networks

Oliver Sawodny, Michael Ederer, Ernst Dieter Gilles, 2011, Autom..

Modeling and experimental validation of the signal transduction via the Escherichia coli sucrose phospho transferase system.

E. Gilles, T. Sauter, 2004, Journal of biotechnology.

On Nonlinear Systems with Poorly Behaved Zero Dynamics

M. Morari, F. Doyle, F. Allgower, 1992, 1992 American Control Conference.

A theoretical study of kinetic instabilities in catalytic distillation processes: influence of transport limitations inside the catalyst

Achim Kienle, Kai Sundmacher, Ernst Dieter Gilles, 2001 .

A model library for membrane reactors implemented in the process modelling tool PROMoT

Ernst Dieter Gilles, Martin Ginkel, Michael Mangold, 2004, Comput. Chem. Eng..

Mathematical models of filamentously growing microorganisms

Ernst Dieter Gilles, Robert King, T. K. Buschulte, 1990 .

A Systematic Approach to Structured Biological Models

Andreas Kremling, Ernst Dieter Gilles, E. Gilles, 1995 .

Comparison of numerical methods for the simulation of dispersed phase systems

S. Motz, A. Mitrović, Ernst Dieter Gilles, 2002 .

Application of the modeling and simulation environment PROMOT/DIVA to the modeling of distillation processes

A. Gerstlauer, Ernst Dieter Gilles, Michael Zeitz, 1997 .

Reduction of mathematical models of signal transduction networks: simulation-based approach applied to EGF receptor signalling.

E D Gilles, F Allgöwer, F. Allgöwer, 2004, Systems biology.

Modeling of inducer exclusion and catabolite repression based on a PTS-dependent sucrose and non-PTS-dependent glycerol transport systems in Escherichia coli K-12 and its experimental verification.

E D Gilles, E. Gilles, J. Wang, 2001, Journal of biotechnology.

Cells T + Proliferation or Apoptosis in Mature CD 8 TCR / CD 8-Mediated Induction of Dynamics of Proximal Signaling Events after Kliche and Burkhart

E. Gilles, J. Sáez-Rodríguez, Xiaoqian Wang, 2008 .

Real-Time Optimization for Large Scale Processes: Nonlinear Model Predictive Control of a High Purity Distillation Column

Johannes P. Schlöder, Frank Allgöwer, Moritz Diehl, 2001 .

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

Hugh D. Spence, Autumn A. Cuellar, A. Cornish-Bowden, 2003, Bioinform..

ProMoT: modular modeling for systems biology

Ernst Dieter Gilles, Martin Ginkel, Sebastian Mirschel, 2009, Bioinform..

Modular Modeling of Cellular Systems with ProMoT/Diva

Andreas Kremling, Ernst Dieter Gilles, Martin Ginkel, 2003, Bioinform..

Workbench zur Modellbildung, Simulation und Analyse zellulärer Systeme (Workbench for Model Set Up, Simulation, and Analysis of Cellular Systems)

Steffen Klamt, Andreas Kremling, Ernst Dieter Gilles, 2004, it Inf. Technol..

Application of the process modeling tool PROMOT to the modeling of metabolic networks

Andreas Kremling, Martin Ginkel, Michael Zeitz, 2000 .

Analyse der evolutiven Adaptation am Beispiel einer pyruvat-auxotrophen Escherichia coli-Mutante (Analysis of the Evolutive Adaptation of a Pyruvate-auxotrophic Escherichia coli Mutant)

Oliver Sawodny, Ronny Feuer, Georg A. Sprenger, 2008, Autom..

Mathematical model for apical growth, septation, and branching of mycelial microorganisms

E. Gilles, U. Reichl, R. King, 1992, Biotechnology and bioengineering.

An improved method for measuring the interseptal spacing in hyphae of Streptomyces tendae by fluorescence microscopy coupled with image processing

Udo Reichl, E. D. Gilles, E. Gilles, 1990 .

Modeling, simulation and stabilizing H∞-control of an oscillating continuous crystallizer with fines dissolution

Jörg Raisch, Ernst Dieter Gilles, Ulrich Vollmer, 2003 .

Path Planning for Lock Entering Maneuvers Using Nonlinear Programming

Ernst Dieter Gilles, Axel Lachmeyer, Benjamin Herzer, 2010 .

Host-pathogen systems biology: logical modelling of hepatocyte growth factor and Helicobacter pylori induced c-Met signal transduction

E. Gilles, S. Klamt, M. Naumann, 2008, BMC Syst. Biol..

Host-pathogen systems biology: logical modelling of hepatocyte growth factor and Helicobacter pylori induced c-Met signal transduction.

E. Gilles, S. Klamt, M. Naumann, 2008, BMC systems biology.

Simulation to Two-Dimensional Dispersed Phase Systems

E. D. Gilles, Natalie Bender, Stefan Motz, 2002 .

Method of Lines within the Simulation Environment DIVA for Chemical Processes

Achim Kienle, Henning Schramm, Michael Zeitz, 2001 .

Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors

E. Gilles, B. Schoeberl, Claudia Eichler-Jonsson, 2002, Nature Biotechnology.

A population model for crystallization processes using two independent particle properties

Ernst Dieter Gilles, S. Motz, A. Gerstlauer, 2001 .

Continuous cultivation of Streptomyces tendae in different media

E. Gilles, D. Lohr, T. Buschulte, 1989, Applied Microbiology and Biotechnology.

Retroactivity as a Criterion to Define Modules in Signaling Networks

Julio Saez-Rodriguez, Ernst Dieter Gilles, Holger Conzelmann, 2011 .

Automatic decomposition of kinetic models of signaling networks minimizing the retroactivity among modules

E. Gilles, J. Sáez-Rodríguez, Martin Ginkel, 2008, ECCB.

Multiple steady states in binary distillation : theoretical and experimental results

Achim Kienle, Ernst Dieter Gilles, M. Groebel, 1995 .

Dynamic pathway modeling of signal transduction networks: a domain-oriented approach.

Holger Conzelmann, Ernst-Dieter Gilles, E. Gilles, 2008, Methods in molecular biology.

DIVA - A powerful tool for dynamic process simulation

Wolfgang Marquardt, P. Holl, Ernst Dieter Gilles, 1988 .

DIVA – a flow‐sheet oriented dynamic process simulator

Wolfgang Marquardt, P. Holl, Ernst Dieter Gilles, 1987 .

Getting around consistent initialization of DAE systems

Wolfgang Marquardt, Ernst Dieter Gilles, A. Kröner, 1997 .

DIVA—an open architecture for dynamic simulation

Wolfgang Marquardt, P. Holl, Ernst Dieter Gilles, 1990 .

Dynamic simulation for plant and control system design

Ernst Dieter Gilles, A. Helget, M. Groebel, 1994 .

Experimentally Coupled Thermokinetic Oscillators: Phase Death and Rhythmogenesis

Ernst Dieter Gilles, Michael Mangold, E. Gilles, 2001 .

Nonlinear observers for distillation columns

Ernst Dieter Gilles, L. Lang, E. Gilles, 1990 .

Visual setup of logical models of signaling and regulatory networks with ProMoT

E. Gilles, J. Sáez-Rodríguez, Martin Ginkel, 2006, BMC Bioinformatics.

ON A PROCESS CONTROL FRAMEWORK FOR QUALITY ASSURANCE

Ernst Dieter Gilles, M. Friedrich, E. Gilles, 1992 .

Asymptotically exact linearization of chemical processes

Ernst Dieter Gilles, M. Storz, M. Friedrich, 1992 .

Model-Based Control of Animal Cell Cultures

E. Gilles, W. Noé, P. Schorn, 1996 .