T. Yomo

发表

Cell division, differentiation and dynamic clustering

K. Kaneko, T. Yomo, 1993, adap-org/9311001.

Isologous diversification: A theory of cell differentiation

K. Kaneko, T. Yomo, 1996, Bulletin of mathematical biology.

Adaptive Response of a Gene Network to Environmental Changes by Fitness-Induced Attractor Selection

K. Kaneko, T. Yomo, A. Kashiwagi, 2006, PloS one.

Cooperative Adaptation to Establishment of a Synthetic Bacterial Mutualism

N. Ono, T. Yomo, A. Kashiwagi, 2011, PloS one.

Transcriptome analysis of a microbial coculture in which the cell populations are separated by a membrane.

N. Ono, T. Yomo, Kazufumi Hosoda, 2014, Methods in molecular biology.

Global coordination in adaptation to gene rewiring

T. Yomo, Saburo Tsuru, Yoshie Murakami, 2015, Nucleic acids research.

Evolvability and single-genotype fluctuation in phenotypic properties: a simple heteropolymer model.

Erich Bornberg-Bauer, Hue Sun Chan, Tetsuya Yomo, 2010, Biophysical journal.

Stabilization of xylanase by random mutagenesis

T. Yomo, I. Urabe, Y. Hata, 1993, FEBS letters.

Bacterial transcriptome reorganization in thermal adaptive evolution

C. Furusawa, N. Ono, T. Yomo, 2015, BMC Genomics.

Growth rate-coordinated transcriptome reorganization in bacteria

T. Yomo, Saburo Tsuru, Yoshie Murakami, 2013, BMC Genomics.

Reaction dynamics analysis of a reconstituted Escherichia coli protein translation system by computational modeling

Kazufumi Hosoda, Tetsuya Yomo, Tomoaki Matsuura, 2017, Proceedings of the National Academy of Sciences.

Construction of Escherichia coli gene expression level perturbation collection.

Tetsuya Yomo, Kotaro Mori, T. Yomo, 2009, Metabolic engineering.

Synthesis of functional proteins within liposomes.

T. Yomo, Hiroaki Suzuki, T. Matsuura, 2010, Methods in molecular biology.

Stochastic Switching Induced Adaptation in a Starved Escherichia coli Population

T. Yomo, Saburo Tsuru, Bei-Wen Ying, 2011, PloS one.

Darwinian evolution in a translation-coupled RNA replication system within a cell-like compartment

T. Yomo, T. Matsuura, T. Sunami, 2013, Nature Communications.

Experimental Rugged Fitness Landscape in Protein Sequence Space

T. Yomo, I. Urabe, Yuuki Hayashi, 2006, PloS one.

Universal relationship in gene-expression changes for cells in steady-growth state

C. Furusawa, K. Kaneko, T. Yomo, 2014, 1407.3622.

Synthesis and characterization of 1-substituted 5-alkylphenazine derivatives carrying functional groups.

T. Yomo, H. Sawai, I. Urabe, 1989, European journal of biochemistry.

Electrostatic and redox potential effects on the rat of electron-transfer reaction of nicotinamide adenine dinucleotides with 1-substituted 5-ethylphenazines.

T. Yomo, I. Urabe, H. Okada, 1990, Biochimica et biophysica acta.

Clustering of Bacterial Growth Dynamics in Response to Growth Media by Dynamic Time Warping

T. Yomo, Bei-Wen Ying, Yang-yang Cao, 2020, Microorganisms.

Evolutionary Consequence of a Trade-Off between Growth and Maintenance along with Ribosomal Damages

T. Yomo, S. Seno, H. Matsuda, 2015, PloS one.

Transcriptome analysis of parallel-evolved Escherichia coli strains under ethanol stress

Naoaki Ono, Chikara Furusawa, Tetsuya Yomo, 2010, BMC Genomics.

A controllable gene expression system in liposomes that includes a positive feedback loop.

T. Yomo, N. Ichihashi, Y. Kazuta, 2013, Molecular bioSystems.

Inherent characteristics of gene expression for buffering environmental changes without the corresponding transcriptional regulations

Takao Suzuki, Tetsuya Yomo, Itaru Urabe, 2006, Biophysics.

Comparative Analyses of Bacterial Transcriptome Reorganisation in Response to Temperature Increase

T. Yomo, Bei-Wen Ying, 2016 .

Multilevel comparative analysis of the contributions of genome reduction and heat shock to the Escherichia coli transcriptome

T. Yomo, S. Seno, H. Matsuda, 2013, BMC Genomics.

Global change in Escherichia coli gene expression in initial stage of symbiosis with Dictyostelium cells.

Chikara Furusawa, Tetsuya Yomo, Itaru Urabe, 2004, Bio Systems.

Insight into the sequence specificity of a probe on an Affymetrix GeneChip by titration experiments using only one oligonucleotide

Naoaki Ono, Shingo Suzuki, Chikara Furusawa, 2007, Biophysics.

Phenotypic convergence in bacterial adaptive evolution to ethanol stress

H. Shimizu, C. Furusawa, N. Ono, 2014, BMC Evolutionary Biology.

Ongoing Phenotypic and Genomic Changes in Experimental Coevolution of RNA Bacteriophage Qβ and Escherichia coli

T. Yomo, A. Kashiwagi, 2011, PLoS genetics.

Expression of a cascading genetic network within liposomes

Tetsuya Yomo, Itaru Urabe, T. Yomo, 2004, FEBS letters.

Femtoliter compartment in liposomes for in vitro selection of proteins.

Tetsuya Yomo, Tomoaki Matsuura, Itaru Urabe, 2006, Analytical biochemistry.

Inference of fitness values and putative appearance time points for evolvable self-replicating molecules from time series of occurrence frequencies in an evolution reactor.

T. Yomo, N. Ichihashi, T. Aita, 2016, Journal of theoretical biology.

MANIPULATION OF LIPOSOME-BASED BIOREACTOR FEATURING ADDING, MIXING, AND ALIQUOTING FEMTOLITER VOLUMES

T. Yomo, Hiroaki Suzuki, S. Tsuda, 2013 .

Liposome‐Based in Vitro Evolution of Aminoacyl‐tRNA Synthetase for Enhanced Pyrrolysine Derivative Incorporation

T. Yomo, T. Matsuura, Yasuhiko Kato, 2015, Chembiochem : a European journal of chemical biology.

Sympatric speciation: compliance with phenotype diversification from a single genotype

K Kaneko, K. Kaneko, T. Yomo, 2000, Proceedings of the Royal Society of London. Series B: Biological Sciences.

Origin of lognormal-like distributions with a common width in a growth and division process.

T. Yomo, Hiroaki Suzuki, Kazufumi Hosoda, 2011, Physical review. E, Statistical, nonlinear, and soft matter physics.

Development of an Automated UV Irradiation Device for Microbial Cell Culture

T. Yomo, Atsushi Shibai, Saburo Tsuru, 2018, SLAS technology.

Bio-inspired three-dimensional self-patterning of functional coatings for pdms microfluidics

T. Yomo, Hiroaki Suzuki, Zikang Tang, 2013 .

Bio-inspired 3D self-patterning of functional coatings for PDMS microfluidics

T. Yomo, Hiroaki Suzuki, Tianzhun Wu, 2011, 2011 16th International Solid-State Sensors, Actuators and Microsystems Conference.

A protocell with fusion and division.

T. Yomo, Jian Xu, Boying Xu, 2019, Biochemical Society transactions.

Evolutionary dynamics of a polymorphic self-replicator population with a finite population size and hyper mutation rate.

T. Yomo, T. Aita, 2015, Journal of theoretical biology.

Solubility of artificial proteins with random sequences

T. Yomo, I. Urabe, K. Yamamoto, 1996, FEBS letters.

Construction and characterization of phage libraries displaying artificial proteins with random sequences.

T. Yomo, I. Urabe, N. Ishiguro, 2000, Journal of bioscience and bioengineering.

Characterization of soluble artificial proteins with random sequences

T. Yomo, I. Urabe, K. Yutani, 1998, FEBS letters.

Characterization of random‐sequence proteins displayed on the surface of Escherichia coli RNase HI

T. Yomo, M. Itaya, N. Doi, 1998, FEBS letters.

Insertion of foreign random sequences of 120 amino acid residues into an active enzyme

T. Yomo, M. Itaya, N. Doi, 1997, FEBS letters.

Activities of 20 aminoacyl-tRNA synthetases expressed in a reconstituted translation system in Escherichia coli

T. Yomo, N. Ichihashi, T. Awai, 2015, Biochemistry and biophysics reports.

Adaptation by stochastic switching of a monostable genetic circuit in Escherichia coli

T. Yomo, A. Kashiwagi, Shingo Suzuki, 2011, Molecular systems biology.

Evolutionary molecular engineering by random elongation mutagenesis

T. Yomo, I. Urabe, Keizo Yamamoto, 1999, Nature Biotechnology.

Direct Visualization of DNA Duplex Formation on the Surface of a Giant Liposome

T. Yomo, T. Toyota, T. Sugawara, 2003, Chembiochem : a European journal of chemical biology.

Development of a Physical Model-Based Algorithm for the Detection of Single-Nucleotide Substitutions by Using Tiling Microarrays

H. Shimizu, C. Furusawa, N. Ono, 2013, PloS one.

Density-Dependent Recycling Promotes the Long-Term Survival of Bacterial Populations during Periods of Starvation

T. Yomo, I. Gudelj, Saburo Tsuru, 2017, mBio.

Functional specialization in regulation and quality control in thermal adaptive evolution

T. Yomo, S. Seno, H. Matsuda, 2015, Genes to cells : devoted to molecular & cellular mechanisms.

A decay effect of the bacterial growth rate associated with genome reduction

T. Yomo, Bei-Wen Ying, Kazuha Ashino, 2018, bioRxiv.

A decay effect of the growth rate associated with genome reduction in Escherichia coli

T. Yomo, Bei-Wen Ying, Kazuha Ashino, 2018, BMC Microbiology.

CleanSeq: A Pipeline for Contamination Detection, Cleanup, and Mutation Verifications from Microbial Genome Sequencing Data

T. Yomo, Yang Xia, Hui Lu, 2022, Applied Sciences.

Various regulatory sequences are deprived of their uniqueness by the universal rule of TA/CG deficiency and TG/CT excess.

T. Yomo, S. Ohno, 1990, Proceedings of the National Academy of Sciences of the United States of America.

Kinetic analysis of aptazyme-regulated gene expression in a cell-free translation system: modeling of ligand-dependent and -independent expression.

T. Yomo, T. Matsuura, N. Ichihashi, 2012, RNA.

Photoinducible Azobenzene trimethylammonium bromide (AzoTAB)-mediated giant vesicle fusion compatible with synthetic protein translation reactions.

T. Yomo, Jian Xu, Boying Xu, 2022, Biochemical and Biophysical Research Communications - BBRC.

Primordial mimicry induces morphological change in Escherichia coli

T. Yomo, Bei-Wen Ying, Yang Xia, 2022, Communications biology.

Replication of partial double-stranded RNAs by Qβ replicase.

T. Yomo, N. Ichihashi, K. Tomita, 2015, Biochemical and biophysical research communications.

Kinetic properties of Qβ replicase, an RNA dependent RNA polymerase

T. Yomo, I. Urabe, Keizo Yamamoto, 2002 .

Micro-droplet model for recursive growth and division dynamics of the cell

T. Yomo, H. Suzuki, T. Ichii, 2011 .

TUNABLE MONDISPERSE FEMTOLITER DROPLET ARRAY USING 3D MICROFLUIDIC TRAPS

T. Yomo, Hiroaki Suzuki, Zikang Tang, 2011 .

Automated in vitro evolution of a translation-coupled RNA replication system in a droplet flow reactor

T. Yomo, N. Ichihashi, T. Ichii, 2018, Scientific Reports.

No stop codons in the antisense strands of the genes for nylon oligomer degradation.

T. Yomo, I. Urabe, H. Okada, 1992, Proceedings of the National Academy of Sciences of the United States of America.

Nonadditivity of mutational effects on the properties of catalase I and its application to efficient directed evolution.

T. Yomo, I. Urabe, K. Yamamoto, 1998, Protein engineering.

PEG-Coupled Semisynthetic Oxidases

T. Yomo, I. Urabe, H. Okada, 1992 .

Preparation and kinetic properties of 5-ethylphenazine-poly(ethylene glycol)-NAD+ conjugate, a unique catalyst having an intramolecular reaction step.

T. Yomo, H. Sawai, I. Urabe, 1989, European journal of biochemistry.

In Vitro Selection of Proteins that Undergo Covalent Labeling with Small Molecules by Thiol‐Disulfide Exchange by Using Ribosome Display

T. Yomo, T. Matsuura, Y. Kazuta, 2011, Chembiochem : a European journal of chemical biology.

The Escherichia coli transcriptome linked to growth fitness

T. Yomo, Bei-Wen Ying, Kazuki Kitahara, 2015, Genomics data.

Ubiquity of log-normal distributions in intra-cellular reaction dynamics

Kunihiko Kaneko, Chikara Furusawa, Tetsuya Yomo, 2005, Biophysics.

Effect of Liposome Size on Internal RNA Replication Coupled with Replicase Translation

T. Yomo, T. Sunami, N. Ichihashi, 2016, Chembiochem : a European journal of chemical biology.

Synthesis of milligram quantities of proteins using a reconstituted in vitro protein synthesis system.

T. Yomo, T. Matsuura, N. Ichihashi, 2014, Journal of bioscience and bioengineering.

Quantifying epistatic interactions among the components constituting the protein translation system

Tetsuya Yomo, Tomoaki Matsuura, Takuyo Aita, 2009, Molecular systems biology.

Positive roles of compartmentalization in internal reactions.

T. Yomo, N. Ichihashi, 2014, Current opinion in chemical biology.

Preparation and kinetic properties of 5-ethylphenazine-lactate-dehydrogenase-NAD+ conjugate, a semisynthetic lactate oxidase showing a hide-and-seek effect.

T. Yomo, I. Urabe, H. Okada, 1992, European journal of biochemistry.

Preparation and kinetic properties of 5-ethylphenazine-poly(ethylene-glycol)-glutamate-dehydrogenase conjugate. A semisynthetic NADH oxidase.

T. Yomo, I. Urabe, H. Okada, 1991, European journal of biochemistry.

Principles for designing enzyme-like catalysts based on the rate-acceleration mechanisms of semisynthetic oxidases.

T. Yomo, I. Urabe, H. Okada, 1992, European journal of biochemistry.

Preparation and kinetic properties of 5-ethylphenazine-glucose-dehydrogenase-NAD+ conjugate, a semisynthetic glucose oxidase.

T. Yomo, I. Urabe, H. Okada, 1991, European journal of biochemistry.

Preparation and Characterization of Semisynthetic Oxidases

T. Yomo, I. Urabe, H. Okada, 1993 .

Probabilistic model based error correction in a set of various mutant sequences analyzed by next-generation sequencing

Tetsuya Yomo, Norikazu Ichihashi, Takuyo Aita, 2013, Comput. Biol. Chem..

Protein folding by the effects of macromolecular crowding

Tetsuya Yomo, Nobuhiko Tokuriki, Yuji Goto, 2004, Protein science : a publication of the Protein Society.

The requirement of cellularity for abiogenesis

T. Yomo, Jian Xu, Adriano Caliari, 2021, Computational and structural biotechnology journal.

Size control of giant unilamellar vesicles prepared from inverted emulsion droplets.

T. Yomo, Hiroaki Suzuki, T. Toyota, 2012, Journal of colloid and interface science.

A novel sequence-specific RNA quantification method using nicking endonuclease, dual-labeled fluorescent DNA probe, and conformation-interchangeable oligo-DNA.

Kazufumi Hosoda, Hiroshi Kita, Tetsuya Yomo, 2008, RNA.

In vitro evolution of α-hemolysin using a liposome display

Tetsuya Yomo, Tomoaki Matsuura, Takeshi Sunami, 2013, Proceedings of the National Academy of Sciences.

Can an Arbitrary Sequence Evolve Towards Acquiring a Biological Function?

Tetsuya Yomo, Hiroshi Sakata, Itaru Urabe, 2003, Journal of Molecular Evolution.

Adaptation and Diversification of an RNA Replication System under Initiation‐ or Termination‐Impaired Translational Conditions

T. Yomo, N. Ichihashi, R. Mizuuchi, 2016, Chembiochem : a European journal of chemical biology.

Constructive Approaches for the Origin of Life

Hiroaki Suzuki, Norikazu Ichihashi, Tomoaki Matsuura, 2012 .

Constructing partial models of cells.

Hiroshi Kita, Tetsuya Yomo, Norikazu Ichihashi, 2010, Cold Spring Harbor perspectives in biology.

Nascent chain, mRNA, and ribosome complexes generated by a pure translation system.

T. Yomo, I. Urabe, T. Matsuura, 2007, Biochemical and biophysical research communications.

Mutation Accumulation in Bacteria Exposed to UV Radiation

Daisuke Motooka, Atsushi Shibai, Bei-Wen Ying, 2014, ALIFE.

The grammatical rule for all DNA: Junk and coding sequences

T. Yomo, S. Ohno, 1991, Electrophoresis.

Gradual development of protein-like global structures through functional selection

Masaki Sasai, Seiji Saito, Tetsuya Yomo, 1999, Nature Structural Biology.

De novo design and synthesis of a 30-cistron translation-factor module

T. Yomo, A. C. Forster, M. Sjödin, 2017, Nucleic acids research.

Construction and characterization of N-terminally truncated DNA polymerase from Thermus thermophilus

T. Yomo, B. Kawakami, I. Urabe, 1996 .

Application of N-terminally truncated DNA polymerase from Thermus thermophilus (delta Tth polymerase) to DNA sequencing and polymerase chain reactions: comparative study of delta Tth and wild-type Tth polymerases.

T. Yomo, B. Kawakami, I. Urabe, 1996, DNA research : an international journal for rapid publication of reports on genes and genomes.

Stochasticity in gene expression in a cell-sized compartment.

Tetsuya Yomo, T. Yomo, Hiroaki Suzuki, 2015, ACS synthetic biology.

Nutrient‐dependent growth defects and mutability of mutators in Escherichia coli

T. Yomo, Saburo Tsuru, Bei-Wen Ying, 2015, Genes to cells : devoted to molecular & cellular mechanisms.

Universality and flexibility in gene expression from bacteria to human.

Tetsuya Yomo, Masamitsu Iino, Hiroki R Ueda, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Evolution of Genetic Codes through Isologous Diversification of Cellular States

Kunihiko Kaneko, Hiroaki Takagi, Tetsuya Yomo, 2000, Artificial Life.

Coupling of the fusion and budding of giant phospholipid vesicles containing macromolecules

Tetsuya Yomo, Tomoaki Matsuura, T. Yomo, 2012, Proceedings of the National Academy of Sciences.

Detection of association and fusion of giant vesicles using a fluorescence-activated cell sorter.

Tetsuya Yomo, Martin M Hanczyc, Tomoaki Matsuura, 2010, Langmuir : the ACS journal of surfaces and colloids.

Gene expression scaled by distance to the genome replication site.

T. Yomo, S. Seno, H. Matsuda, 2014, Molecular bioSystems.

Random Mutagenesis of Glutamine Synthetase from Escherichia coli; Correlation between Structure, Activity, and Fitness

Tetsuya Yomo, Itaru Urabe, T. Yomo, 1994 .

Sorting of cells of the same size, shape, and cell cycle stage for a single cell level assay without staining

Kunihiko Kaneko, Tetsuya Yomo, Kiyoshi Ohnuma, 2006, BMC Cell Biology.

Phenotypic plasticity of Escherichia coli at initial stage of symbiosis with Dictyostelium discoideum

Tetsuya Yomo, Akiko Kashiwagi, Itaru Urabe, 2008, Biosyst..

Ribosome display for rapid protein evolution by consecutive rounds of mutation and selection.

Tetsuya Yomo, Tomoaki Matsuura, T. Yomo, 2010, Methods in molecular biology.

Compensatory Evolution of a WW Domain Variant Lacking the Strictly Conserved Trp Residue

T. Yomo, T. Matsuura, Hayato Yanagida, 2007, Journal of Molecular Evolution.

A design principle for a single-stranded RNA genome that replicates with less double-strand formation

T. Yomo, N. Ichihashi, K. Usui, 2015, Nucleic acids research.

Contribution of Silent Mutations to Thermal Adaptation of RNA Bacteriophage Qβ

T. Yomo, A. Kashiwagi, Ryusuke Sugawara, 2014, Journal of Virology.

Host–parasite oscillation dynamics and evolution in a compartmentalized RNA replication system

T. Yomo, N. Ichihashi, Taro Furubayashi, 2016, Proceedings of the National Academy of Sciences.

A plasmid encoding enzymes for nylon oligomer degradation: nucleotide sequence and analysis of pOAD2.

T. Yomo, I. Urabe, T. Maekawa, 1995, Microbiology.

Kinetic Analysis of the Entire RNA Amplification Process by Qβ Replicase*

Kazufumi Hosoda, Hiroshi Kita, Tetsuya Yomo, 2007, Journal of Biological Chemistry.

Adaptive evolution of an artificial RNA genome to a reduced ribosome environment.

T. Yomo, N. Ichihashi, K. Usui, 2015, ACS synthetic biology.

Kinetic Analysis of β-Galactosidase and β-Glucuronidase Tetramerization Coupled with Protein Translation*

T. Yomo, Kazufumi Hosoda, T. Matsuura, 2011, The Journal of Biological Chemistry.

Effects of amino acid substitution on the physicochemical properties of artificial proteins with random sequences.

T. Yomo, N. Tokuriki, I. Urabe, 2001, Journal of bioscience and bioengineering.

A simple comparison of the extrinsic noise in gene expression between native and foreign regulations in Escherichia coli.

T. Yomo, S. Seno, H. Matsuda, 2017, Biochemical and biophysical research communications.

Bacterial Cells Carrying Synthetic Dual-Function Operon Survived Starvation

T. Yomo, Saburo Tsuru, Y. Matsumoto, 2011, Journal of biomedicine & biotechnology.

Model-based analysis of non-specific binding for background correction of high-density oligonucleotide microarrays

Hiroshi Shimizu, Naoaki Ono, Shingo Suzuki, 2009, Bioinform..

Optimization and compartmentalization of a cell-free mixture of DNA amplification and protein translation

T. Yomo, Yang Xia, Jian Xu, 2022, Applied Microbiology and Biotechnology.

Effects of compartment size on the kinetics of intracompartmental multimeric protein synthesis.

T. Yomo, Hiroaki Suzuki, Kazufumi Hosoda, 2012, ACS synthetic biology.

Programmed vesicle fusion triggers gene expression.

Tetsuya Yomo, Martin M Hanczyc, Tomoaki Matsuura, 2011, Langmuir : the ACS journal of surfaces and colloids.

Packet Fragmentation and Reassembly in Molecular Communication

Tadashi Nakano, Yutaka Okaie, Taro Furubayashi, 2016, IEEE Transactions on NanoBioscience.

Cloning, nucleotide sequences, and enzymatic properties of glucose dehydrogenase isozymes from Bacillus megaterium IAM1030

T. Yomo, T. Mitamura, I. Urabe, 1992, Journal of bacteriology.

Comparison of Sequence Reads Obtained from Three Next-Generation Sequencing Platforms

C. Furusawa, N. Ono, T. Yomo, 2011, PloS one.

Constructive Approaches for Understanding the Origin of Self-Replication and Evolution

Tetsuya Yomo, Norikazu Ichihashi, T. Yomo, 2016, Life.

Periodic Pattern of Genetic and Fitness Diversity during Evolution of an Artificial Cell-Like System.

T. Yomo, D. Motooka, N. Ichihashi, 2015, Molecular biology and evolution.

Molecular Clock of Neutral Mutations in a Fitness-Increasing Evolutionary Process

T. Yomo, Shingo Suzuki, Saburo Tsuru, 2015, PLoS genetics.

Symbiotic sympatric speciation through interaction-driven phenotype differentiation

K. Kaneko, T. Yomo, 2002 .

Adaptation of a Cyanobacterium to a Biochemically Rich Environment in Experimental Evolution as an Initial Step toward a Chloroplast-Like State

T. Yomo, A. Kashiwagi, Kazufumi Hosoda, 2014, PloS one.

Self-replication of circular DNA by a self-encoded DNA polymerase through rolling-circle replication and recombination

T. Yomo, N. Ichihashi, Y. Sakatani, 2018, Scientific Reports.

Cell Sorting-Directed Selection of Bacterial Cells in Bigger Sizes Analyzed by Imaging Flow Cytometry during Experimental Evolution

T. Yomo, Yang Xia, Hui Lu, 2023, International journal of molecular sciences.

Experimental Molecular Evolution Showing Flexibility of Fitness Leading to Coexistence and Diversification in Biological System

Tetsuya Yomo, Akiko Kashiwagi, Masato Katsuno, 2004, BioADIT.

Plasticity of Fitness and Diversification Process During an Experimental Molecular Evolution

Tetsuya Yomo, Itaru Urabe, Wataru Noumachi, 2001, Journal of Molecular Evolution.

Thermal Conversion from Low- to High-activity Forms of Catalase I from Bacillus stearothermophilus *

T. Yomo, I. Urabe, K. Yutani, 1997, The Journal of Biological Chemistry.

Experimental Approach for Early Evolution of Protein Function

T. Yomo, Yuuki Hayashi, T. Aita, 2011 .

Heme content of catalase I from Bacillus stearothermophilus

T. Yomo, I. Urabe, Y. Suga, 1996 .

Hydrodynamic trapping of Tetrahymena thermophila for the long-term monitoring of cell behaviors.

Kazufumi Hosoda, Tetsuya Yomo, T. Yomo, 2012, Lab on a chip.

Single‐Cell Isolation and Cloning of Tetrahymena thermophila Cells with a Fluorescence‐Activated Cell Sorter

T. Yomo, A. Kashiwagi, K. Mori, 2011, The Journal of eukaryotic microbiology.

Emergence of nylon oligomer degradation enzymes in Pseudomonas aeruginosa PAO through experimental evolution

T. Yomo, I. Urabe, I. D. Prijambada, 1995, Applied and environmental microbiology.

Liposome-Based Liquid Handling Platform Featuring Addition, Mixing, and Aliquoting of Femtoliter Volumes

Soichiro Tsuda, Tetsuya Yomo, T. Yomo, 2014, PloS one.

Shrunk to femtolitre: Tuning high-throughput monodisperse water-in-oil droplet arrays for ultra-small micro-reactors

T. Yomo, Hiroaki Suzuki, Zikang Tang, 2012 .

Cell-free protein synthesis from a single copy of DNA in a glass microchamber.

Tetsuya Yomo, Tomoaki Matsuura, Taiji Okano, 2012, Lab on a chip.

In vitro evolution of proteins.

Tetsuya Yomo, Tomoaki Matsuura, T. Yomo, 2006, Journal of bioscience and bioengineering.

How selection affects phenotypic fluctuation

Yoichiro Ito, Kunihiko Kaneko, Tetsuya Yomo, 2009, Molecular systems biology.

Directed evolution of cell size in Escherichia coli

T. Yomo, S. Seno, H. Matsuda, 2014, BMC Evolutionary Biology.

Noisy cell growth rate leads to fluctuating protein concentration in bacteria

K. Kaneko, T. Yomo, A. Kashiwagi, 2009, Physical biology.

On the relation between fluctuation and response in biological systems

Yoichiro Ito, Kunihiko Kaneko, Tetsuya Yomo, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Insertion sequence IS6100 on plasmid pOAD2, which degrades nylon oligomers

T. Yomo, I. Urabe, K. Kato, 1994, Journal of bacteriology.

Dynamic change in promoter activation during lysine biosynthesis in Escherichia coli cells.

Chikara Furusawa, Tetsuya Yomo, Takashi Hirasawa, 2008, Molecular bioSystems.

Extracting characteristic properties of fitness landscape from in vitro molecular evolution: a case study on infectivity of fd phage to E.coli.

Tetsuya Yomo, Itaru Urabe, Yuuki Hayashi, 2007, Journal of theoretical biology.

Transition from Positive to Neutral in Mutation Fixation along with Continuing Rising Fitness in Thermal Adaptive Evolution

Naoaki Ono, Chikara Furusawa, Tetsuya Yomo, 2010, PLoS genetics.

Built-In Synthetic Gene Circuits in Escherichia coli – Methodology and Applications

Tetsuya Yomo, Bei-Wen Ying, T. Yomo, 2012 .

Refined method for the genomic integration of complex synthetic circuits.

T. Yomo, Bei-Wen Ying, Y. Shimizu, 2010, Journal of bioscience and bioengineering.

Synthesis of functional protein in liposome.

M Wakabayashi, T. Yomo, I. Urabe, 2001, Journal of bioscience and bioengineering.

Maintenance of a translation-coupled RNA replication in dynamic micro-sized compartments under continuous stirring and flow

T. Yomo, N. Ichihashi, T. Ichii, 2016 .

Modification of an amplification reaction in recursively dynamic compartments driven by stirring.

T. Yomo, Hiroaki Suzuki, T. Ichii, 2013, Analytical chemistry.

Compartmentalization in a water-in-oil emulsion repressed the spontaneous amplification of RNA by Q beta replicase.

T. Yomo, H. Kita, Kazufumi Hosoda, 2010, Biochemistry.

Quantitative expression analysis using oligonucleotide microarrays based on a physico-chemical model

Hiroshi Shimizu, Naoaki Ono, Shingo Suzuki, 2008, BIONETICS.

An improved physico-chemical model of hybridization on high-density oligonucleotide microarrays

Hiroshi Shimizu, Naoaki Ono, Shingo Suzuki, 2008, Bioinform..

Experimental optimization of probe length to increase the sequence specificity of high-density oligonucleotide microarrays

Naoaki Ono, Shingo Suzuki, Chikara Furusawa, 2007, BMC Genomics.

Concordant evolution of coding and noncoding regions of DNA made possible by the universal rule of TA/CG deficiency-TG/CT excess.

T. Yomo, S. Ohno, T Yomo, 1989, Proceedings of the National Academy of Sciences of the United States of America.

On a kinetic origin of heredity: minority control in a replicating system with mutually catalytic molecules.

Kunihiko Kaneko, Tetsuya Yomo, K. Kaneko, 2002, Journal of theoretical biology.

The 27-kD diphtheria toxin receptor-associated protein (DRAP27) from vero cells is the monkey homologue of human CD9 antigen: expression of DRAP27 elevates the number of diphtheria toxin receptors on toxin- sensitive cells

T. Yomo, T. Mitamura, E. Mekada, 1992, The Journal of cell biology.

In vitro membrane protein synthesis inside cell-sized vesicles reveals the dependence of membrane protein integration on vesicle volume.

Tetsuya Yomo, Tomoaki Matsuura, Yasuhiko Kato, 2014, ACS synthetic biology.

Cell-free protein synthesis in a microchamber revealed the presence of an optimum compartment volume for high-order reactions.

Tetsuya Yomo, Tomoaki Matsuura, Taiji Okano, 2014, ACS synthetic biology.

Importance of parasite RNA species repression for prolonged translation-coupled RNA self-replication.

Tetsuya Yomo, Norikazu Ichihashi, Tomoaki Matsuura, 2012, Chemistry & biology.

through experimental evolution. enzymes in Pseudomonas aeruginosa PAO Emergence of nylon oligomer degradation

T. Yomo, I. Urabe, I. D. Prijambada, 2013 .

Identification of Two Forms of Qβ Replicase with Different Thermal Stabilities but Identical RNA Replication Activity*

T. Yomo, Kazufumi Hosoda, T. Matsuura, 2010, The Journal of Biological Chemistry.

Kinetic equation for template-dependent polymerase reactions and its application to Thermus thermophilus DNA polymerase

T. Yomo, I. Urabe, Keizo Yamamoto, 1998 .

Reliable End-to-End Molecular Communication with Packet Replication and Retransmission

Tadashi Nakano, Andrew W. Eckford, Taro Furubayashi, 2014, 2015 IEEE Global Communications Conference (GLOBECOM).

Evolvability and Self-Replication of Genetic Information in Liposomes

T. Yomo, Hiroaki Suzuki, H. Kita, 2011 .

Fractal-shaped microchannel design for a kinetic analysis of biochemical reaction in a delay line

T. Yomo, Hiroaki Suzuki, Kazufumi Hosoda, 2012, Microfluidics and Nanofluidics.

Fractal-shaped microchannel design for a kinetic analysis of biochemical reaction in a delay line

T. Yomo, Hiroaki Suzuki, Kazufumi Hosoda, 2012 .

GroEL Binds Artificial Proteins with Random Sequences*

H. Taguchi, Masasuke Yoshida, T. Yomo, 2000, The Journal of Biological Chemistry.

Conformational change of the actomyosin complex drives the multiple stepping movement

T. Yomo, M. Sasai, T. P. Terada, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Evolution of an Arbitrary Sequence in Solubility

Yoichiro Ito, Tetsuya Yomo, Itaru Urabe, 2004, Journal of Molecular Evolution.

Kinetic model of double‐stranded RNA formation during long RNA replication by Qβ replicase

T. Yomo, T. Matsuura, N. Ichihashi, 2013, FEBS letters.

Evolvability of random polypeptides through functional selection within a small library.

Tetsuya Yomo, Nobuhiko Tokuriki, Itaru Urabe, 2002, Protein engineering.

2M1345 Experimental study on the relationship between flexibility of bio-organismsand evolution rate

K. Kaneko, T. Yomo, K. Ito, 2002 .

2M1330 Theoretical study on the relationship between flexibility ofbio-organisms and evolution rate

K. Kaneko, T. Yomo, Y. Itô, 2002 .

Properties of Artificial Proteins with Random Sequences a

T. Yomo, Keizo Yamamoto, S. Negoro, 1998, Annals of the New York Academy of Sciences.

Importance of compartment formation for a self-encoding system

T. Yomo, I. Urabe, T. Matsuura, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Quantitative analysis of the bacteriophage Qbeta infection cycle.

T. Yomo, H. Kita, I. Urabe, 2009, Biochimica et biophysica acta.

Purification and characterization of Qβ replicase with a His-tag

T. Yomo, I. Urabe, Keizo Yamamoto, 2000 .

Liposome display for in vitro selection and evolution of membrane proteins

Tetsuya Yomo, Tomoaki Matsuura, Takeshi Sunami, 2014, Nature Protocols.

Directed Evolution of Proteins through In Vitro Protein Synthesis in Liposomes

Tetsuya Yomo, Tomoaki Matsuura, Takeshi Sunami, 2012, Journal of nucleic acids.

Cell-free protein synthesis inside giant unilamellar vesicles analyzed by flow cytometry.

Tetsuya Yomo, Tomoaki Matsuura, Takeshi Sunami, 2012, Langmuir : the ACS journal of surfaces and colloids.

Construction of a gene screening system using giant unilamellar liposomes and a fluorescence-activated cell sorter.

T. Yomo, T. Matsuura, T. Sunami, 2012, Analytical chemistry.

Construction of bacteria-eukaryote synthetic mutualism

Kazufumi Hosoda, Shingo Suzuki, Tetsuya Yomo, 2013, Biosyst..

Influence of adaptive mutations, from thermal adaptation experiments, on the infection cycle of RNA bacteriophage Qβ

T. Yomo, A. Kashiwagi, N. Kumasaka, 2018, Archives of Virology.

Functional Qβ replicase genetically fusing essential subunits EF-Ts and EF-Tu with β-subunit

T. Yomo, H. Kita, I. Urabe, 2006 .

Development of a reporter peptide that catalytically produces a fluorescent signal through α‐complementation

Tetsuya Yomo, Norikazu Ichihashi, T. Yomo, 2015, Protein science : a publication of the Protein Society.

How small can the difference among competitors be for coexistence to occur

T. Yomo, A. Kashiwagi, I. Urabe, 1998, Researches on Population Ecology.

Giant Vesicles Produced with Phosphatidylcholines (PCs) and Phosphatidylethanolamines (PEs) by Water-in-Oil Inverted Emulsions

T. Yomo, Jian Xu, Boying Xu, 2021, Life.

Population analysis of structural properties of giant liposomes by flow cytometry.

Masanori Fujinami, Tetsuya Yomo, Koichi Oguma, 2009, Langmuir : the ACS journal of surfaces and colloids.

Quantitative study of the structure of multilamellar giant liposomes as a container of protein synthesis reaction.

Kazufumi Hosoda, Tetsuya Yomo, Tomoaki Matsuura, 2008, Langmuir : the ACS journal of surfaces and colloids.

Quantification of Giant Unilamellar Vesicle Fusion Products by High-Throughput Image Analysis

T. Yomo, M. Imai, M. Hanczyc, 2023, International journal of molecular sciences.

Shape Transformations of Lipid Vesicles by Insertion of Bulky-Head Lipids

T. Yomo, Hiroaki Suzuki, S. Tsuda, 2015, PloS one.

Fate of a mutant emerging at the initial stage of evolution

Tetsuya Yomo, Itaru Urabe, T. Yomo, 1996, Researches on Population Ecology.

Using Imaging Flow Cytometry to Quantify and Optimize Giant Vesicle Production by Water-in-oil Emulsion Transfer Methods.

T. Yomo, J. Szostak, M. Hanczyc, 2019, Langmuir : the ACS journal of surfaces and colloids.

Quantification of structural properties of cell-sized individual liposomes by flow cytometry.

Tetsuya Yomo, Itaru Urabe, Tadashi Sugawara, 2006, Journal of bioscience and bioengineering.

Sustainable proliferation of liposomes compatible with inner RNA replication

T. Yomo, T. Sunami, S. Fujii, 2015, Proceedings of the National Academy of Sciences.

Statistical analysis of vesicle morphology dynamics based on a free energy landscape.

T. Yomo, Hiroaki Suzuki, S. Tsuda, 2014, Soft matter.

Self-replication of circular DNA by a self-encoded DNA polymerase through rolling-circle replication and recombination

Tetsuya Yomo, Norikazu Ichihashi, Yoshihiro Sakatani, 2018, Scientific Reports.

A transcription and translation-coupled DNA replication system using rolling-circle replication

Tetsuya Yomo, Norikazu Ichihashi, Yoshihiro Sakatani, 2015, Scientific Reports.

Importance of Translation–Replication Balance for Efficient Replication by the Self‐Encoded Replicase

T. Yomo, H. Kita, Kazufumi Hosoda, 2008, Chembiochem : a European journal of chemical biology.

A reduced genome decreases the host carrying capacity for foreign DNA

T. Yomo, Saburo Tsuru, Bei-Wen Ying, 2014, Microbial Cell Factories.

Genomic confirmation of nutrient‐dependent mutability of mutators in Escherichia coli

T. Yomo, Atsushi Shibai, Saburo Tsuru, 2015, Genes to cells : devoted to molecular & cellular mechanisms.

Defined DNA-mediated assemblies of gene-expressing giant unilamellar vesicles.

Tetsuya Yomo, Maik Hadorn, T. Yomo, 2013, Langmuir : the ACS journal of surfaces and colloids.

Molecular Evolution in Static and Dynamical Landscapes

T. Yomo, 2002, Journal of biological physics.

General equation of steady-state enzyme kinetics using net rate constants and its applicaiton to the kinetic analysis of catalase reaction.

T. Yomo, I. Urabe, K. Yamamoto, 1997, Journal of theoretical biology.

Experimental sketch of landscapes in protein sequence space

T. Yomo, I. Urabe, S. Aihara, 1995 .

Revised Sequence and Activity of Bacillus stearothermophilus Catalase I (Formerly Peroxidase)

Tetsuya Yomo, Satoshi Aihara, Itaru Urabe, 1992 .

Identification of giant unilamellar vesicles with permeability to small charged molecules

T. Yomo, Hiroaki Suzuki, T. Matsuura, 2014 .

Kinetic Basis for Artificially Designing Enzymes

T. Yomo, I. Urabe, H. Okada, 1990 .

The Evolutionary Enhancement of Genotype–Phenotype Linkages in the Presence of Multiple Copies of Genetic Material

Tetsuya Yomo, Norikazu Ichihashi, Tomoaki Matsuura, 2014, Chembiochem : a European journal of chemical biology.

Comprehensive Analysis of the Effects of Escherichia coli ORFs on Protein Translation Reaction*S

N. Ono, T. Yomo, H. Mori, 2008, Molecular & Cellular Proteomics.

Chapter 2 - Detection and analysis of protein synthesis and RNA replication in giant liposomes.

T. Yomo, Hiroaki Suzuki, H. Kita, 2009, Methods in enzymology.

A High-Throughput Method to Quantify the Structural Properties of Individual Cell-Sized Liposomes by Flow Cytometry

Tadashi Sugawara, Tetsuya Yomo, Itaru Urabe, 2006, BioADIT.

Statistical analysis of discrete encapsulation of nanomaterials in colloidal capsules

Tetsuya Yomo, T. Yomo, Hiroaki Suzuki, 2012 .

A Novel Versatility of Catalase I as a Dioxygenase for Indole-ring-opening Dioxygenation

T. Yomo, I. Urabe, T. Sagawa, 1999 .

Improved methods for the preparation of N6-(2-carboxyethyl)-NAD and poly(ethylene glycol)-bound NAD(H)

T. Yomo, I. Urabe, H. Okada, 1991 .

α‐Complementation in an Artificial Genome Replication System in Liposomes

T. Yomo, T. Matsuura, N. Ichihashi, 2012, Chembiochem : a European journal of chemical biology.

Membrane Curvature Affects the Formation of α-Hemolysin Nanopores.

T. Yomo, T. Matsuura, S. Fujii, 2015, ACS chemical biology.

In vitro directed evolution of alpha-hemolysin by liposome display

T. Yomo, T. Matsuura, S. Fujii, 2015, Biophysics.

Lipid Exchange Promotes Fusion of Model Protocells

T. Yomo, J. Szostak, Zhifang Fan, 2023, Small methods.

Evolution of carrying capacity in evolution experiments focusing on a single locus on the Escherichia coli chromosome

Tetsuya Yomo, Akiko Kashiwagi, Kotaro Mori, 2009, Biosyst..

A Theory of Differentiation with Dynamic Clustering

Kunihiko Kaneko, Tetsuya Yomo, K. Kaneko, 1995, ECAL.

A Theory of Di erentiation with Dynamic Clustering

K. Kaneko, T. Yomo, 2022 .

Construction of a mini-RNA replicon in Escherichia coli

T. Yomo, A. Kashiwagi, 2023, Synthetic Biology.

Functional Qbeta replicase genetically fusing essential subunits EF-Ts and EF-Tu with beta-subunit.

T. Yomo, H. Kita, I. Urabe, 2006, Journal of bioscience and bioengineering.

Isologous diversification for robust development of cell society.

K Kaneko, K. Kaneko, T. Yomo, 1999, Journal of theoretical biology.

Attractor Selection as Self-Adaptive Control Mechanism for Communication Networks

Kenji Leibnitz, Masayuki Murata, Tetsuya Yomo, 2011 .

Cloning, nucleotide sequence, and expression in escherichia coli of DNA polymerase gene (polA) from thermus thermophilus HB8

T. Yomo, S. Soga, I. Urabe, 1993 .

2P437 An improved thermodynamical model of hybridization on high-density oligonucleotide microarrays(48. Bioinformatics, genomics and proteomics (II),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

C. Furusawa, N. Ono, T. Yomo, 2006 .

Effects of ribosomes on the kinetics of Qβ replication

T. Yomo, N. Ichihashi, K. Usui, 2014, FEBS letters.

Darwinian evolution in a translation-coupled RNA replication system within a cell-like compartment

T. Yomo, T. Sunami, N. Ichihashi, 2013, Nature Communications.

An observation of the initial stage towards a symbiotic relationship.

Tetsuya Yomo, Itaru Urabe, Masahiko Todoriki, 2002, Bio Systems.

Effects of compartment size on the kinetics of intracompartmental multimeric protein synthesis.

T. Yomo, Hiroaki Suzuki, Kazufumi Hosoda, 2012, ACS synthetic biology.

Effect of Liposome Size on Internal RNA Replication Coupled with Replicase Translation

T. Yomo, T. Sunami, N. Ichihashi, 2016, Chembiochem : a European journal of chemical biology.

Positive roles of compartmentalization in internal reactions.

T. Yomo, N. Ichihashi, 2014, Current opinion in chemical biology.

Refined method for the genomic integration of complex synthetic circuits.

T. Yomo, Bei-Wen Ying, Y. Shimizu, 2010, Journal of bioscience and bioengineering.

Synthetic ecosystem of Escherichia coli for discovery of novel cooperative and self-adaptive algorithms

Kazufumi Hosoda, Tetsuya Yomo, Akiko Kashiwagi, 2008, BIONETICS.

Periodic Pattern of Genetic and Fitness Diversity during Evolution of an Artificial Cell-Like System.

T. Yomo, D. Motooka, N. Ichihashi, 2015, Molecular biology and evolution.

Global/temporal gene expression analysis of Escherichia coli in the early stages of symbiotic relationship development with the cellular slime mold Dictyostelium discoideum

C. Furusawa, N. Ono, T. Yomo, 2009, Biosyst..

Population Analysis of Liposomes with Protein Synthesis and a Cascading Genetic Network

Tetsuya Yomo, Takeshi Sunami, T. Yomo, 2008 .

Combinatorial selection for replicable RNA by Qβ replicase while maintaining encoded gene function

T. Yomo, H. Mori, K. Yokoyama, 2017, PloS one.

Membrane Curvature Affects the Formation of α-Hemolysin Nanopores.

T. Yomo, S. Fujii, Tomoaki Matsuura, 2015, ACS Chemical Biology.

Population analysis of structural properties of giant liposomes by flow cytometry.

T. Yomo, K. Oguma, Hiroaki Suzuki, 2009, Langmuir : the ACS journal of surfaces and colloids.

Probabilistic transition from unstable predator-prey interaction to stable coexistence of Dictyostelium discoideum and Escherichia coli

Kazufumi Hosoda, Shingo Suzuki, Tetsuya Yomo, 2011, Biosyst..

Construction and characterization of phage libraries displaying artificial proteins with random sequences.

T. Yomo, I. Urabe, Y. Shima, 2000, Journal of bioscience and bioengineering.

Adaptation and Diversification of an RNA Replication System under Initiation‐ or Termination‐Impaired Translational Conditions

T. Yomo, N. Ichihashi, R. Mizuuchi, 2016, Chembiochem : a European journal of chemical biology.

Sustainable proliferation of liposomes compatible with inner RNA replication

T. Yomo, T. Sunami, S. Fujii, 2015, Proceedings of the National Academy of Sciences.