I. Jonassen

发表

New feature subset selection procedures for classification of expression profiles

T. H. Bø, I. Jonassen, 2002, Genome Biology.

Predicting gene regulatory elements in silico on a genomic scale.

I. Jonassen, A. Brazma, J. Vilo, 1998, Genome research.

Searching the protein structure databank with weak sequence patterns and structural constraints.

I. Jonassen, W. Taylor, I. Eidhammer, 2000, Journal of molecular biology.

Discovery of local packing motifs in protein structures

I. Jonassen, W. Taylor, I. Eidhammer, 1999, Proteins.

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

Alex Bateman, Rolf Apweiler, Beate Marx, 2001, Nucleic Acids Res..

Finding flexible patterns in unaligned protein sequences

D. Higgins, I. Jonassen, J. Collins, 1995, Protein science : a publication of the Protein Society.

Probing the "dark matter" of protein fold space.

William R Taylor, Inge Jonassen, Siv Midtun Hollup, 2009, Structure.

Structure-dependent relationships between growth temperature of prokaryotes and the amino acid frequency in their proteins

I. Jonassen, N. Willassen, Gisle Sælensminde, 2007, Extremophiles.

Amino acid contacts in proteins adapted to different temperatures: hydrophobic interactions and surface charges play a key role

I. Jonassen, Gisle Sælensminde, Øyvind Halskau, 2008, Extremophiles.

LSimpute: accurate estimation of missing values in microarray data with least squares methods.

T. H. Bø, I. Jonassen, B. Dysvik, 2004, Nucleic acids research.

Gene expression profiles in rat brain disclose CNS signature genes and regional patterns of functional specialisation

I. Jonassen, V. Steen, A. Vik-Mo, 2007, BMC Genomics.

The genome sequence of Atlantic cod reveals a unique immune system

Inge Jonassen, Tor Gjøen, Stig W. Omholt, 2011, Nature.

The Atlantic salmon genome provides insights into rediploidization

Steven J. M. Jones, James A. Yorke, Torgeir R. Hvidsten, 2016, Nature.

Evaluation of signal peptide prediction algorithms for identification of mycobacterial signal peptides using sequence data from proteomic methods

Inge Jonassen, Harald G. Wiker, I. Jonassen, 2009, Microbiology.

High accuracy mass spectrometry analysis as a tool to verify and improve gene annotation using Mycobacterium tuberculosis as an example

Inge Jonassen, Gisle Sælensminde, I. Jonassen, 2008, BMC Genomics.

ERG upregulation and related ETS transcription factors in prostate cancer.

Inge Jonassen, Laila Stordrange, Biaoyang Lin, 2007, International journal of oncology.

Gene expression profile of oral squamous cell carcinomas from Sri Lankan betel quid users.

I. Jonassen, O. Bruland, S. Warnakulasuriya, 2007, Oncology reports.

Gene expression profiles of head and neck carcinomas from Sudanese and Norwegian patients reveal common biological pathways regardless of race and lifestyle.

I. Jonassen, H. Aarstad, K. Kross, 2006, Clinical cancer research : an official journal of the American Association for Cancer Research.

Increased Expression of SIM2-s Protein Is a Novel Marker of Aggressive Prostate Cancer

Inge Jonassen, Laila Stordrange, Leroy Hood, 2007, Clinical Cancer Research.

Correction: DNA extraction replicates improve diversity and compositional dissimilarity in metabarcoding of eukaryotes in marine sediments

I. Jonassen, E. Thompson, A. Lanzén, 2018, PloS one.

A structural pattern‐based method for protein fold recognition

William R Taylor, Inge Jonassen, I. Jonassen, 2004, Proteins.

Repeats and EST analysis for new organisms

I. Jonassen, K. Malde, 2008, BMC Genomics.

Disentangling genetic and epigenetic determinants of ultrafast adaptation

Markus J. Tamás, I. Jonassen, R. Wysocki, 2016, Molecular systems biology.

Mixture models applied to microarray gene expression data

T. H. Bø, I. Jonassen, B. Dysvik, 2006 .

Pairwise Local Alignment and Database Search

William R. Taylor, Inge Jonassen, Ingvar Eidhammer, 2012 .

Scoring Function for Pattern Discovery Programs Taking Into Account Sequence Diversity

Desmond G. Higgins, Inge Jonassen, D. Higgins, 1996 .

ReCodLiver0.9: Overcoming Challenges in Genome-Scale Metabolic Reconstruction of a Non-model Species

E. M. Hanna, I. Jonassen, D. Zielinski, 2020, Frontiers in Molecular Biosciences.

Characterization of early stages of human B cell development by gene expression profiling

L. Staudt, A. Rosenwald, T. H. Bø, 2009, The Journal of Immunology.

GBA2 Mutations Cause a Marinesco-Sjögren-Like Syndrome: Genetic and Biochemical Studies

I. Jonassen, S. Johansson, O. Bruland, 2017, PloS one.

Metagenome-assembled genome distribution and key functionality highlight importance of aerobic metabolism in Svalbard permafrost

I. Jonassen, L. Øvreås, N. Taş, 2020, FEMS microbiology ecology.

Surprising Prokaryotic and Eukaryotic Diversity, Community Structure and Biogeography of Ethiopian Soda Lakes

I. Jonassen, A. Gessesse, L. Øvreås, 2013, PloS one.

FAIRDOM: supporting FAIR data and model management

Xiaoming Hu, Alan R. Williams, Frederik Coppens, 2020 .

Gene–methylation interactions: discovering region-wise DNA methylation levels that modify SNP-associated disease risk

R. T. Lie, Jack A. Taylor, I. Jonassen, 2019, Clinical Epigenetics.

Expression of Nestin associates with BRCA1 mutations, a basal-like phenotype and aggressive breast cancer

I. Jonassen, T. Aas, J. Bergh, 2017, Scientific Reports.

OP-CBIO130047 1..7

Markus A. Grohme, I. Jonassen, K. Malde, 2013 .

Gene–methylation interactions: discovering region-wise DNA methylation levels that modify SNP-associated disease risk

R. T. Lie, Jack A. Taylor, I. Jonassen, 2020, Clinical Epigenetics.

Salmon louse (Lepeophtheirus salmonis) transcriptomes during post molting maturation and egg production, revealed using EST-sequencing and microarray analysis

I. Jonassen, F. Nilsen, B. Dysvik, 2008, BMC Genomics.

Genes of cell-cell interactions, chemotherapy detoxification and apoptosis are induced during chemotherapy of acute myeloid leukemia

T. H. Bø, I. Jonassen, Ø. Bruserud, 2009, BMC Cancer.

Exploring the composition and diversity of microbial communities at the Jan Mayen hydrothermal vent field using RNA and DNA.

Tim Urich, Inge Jonassen, Anders Lanzén, 2011, FEMS microbiology ecology.

Genomic Diversity among Beijing and non-Beijing Mycobacterium tuberculosis Isolates from Myanmar

T. H. Bø, I. Jonassen, J. Hinds, 2008, PloS one.

High‐throughput metabarcoding of eukaryotic diversity for environmental monitoring of offshore oil‐drilling activities

Inge Jonassen, Eric M. Thompson, Anders Lanzén, 2016, Molecular ecology.

Identification of highly connected and differentially expressed gene subnetworks in metastasizing endometrial cancer

Anna Berg, Inge Jonassen, Kjell Petersen, 2018, PloS one.

Superposition and Dynamic Programming

William R. Taylor, Inge Jonassen, Ingvar Eidhammer, 2012 .

Characterization of protein families, sequence patterns, and functional annotations in large data sets

Bengt Persson, Inge Jonassen, I. Jonassen, 2008 .

Bacterial and Archaeal Metagenome-Assembled Genome Sequences from Svalbard Permafrost

I. Jonassen, L. Øvreås, N. Taş, 2019, Microbiology Resource Announcements.

Exploring the compositionand diversityofmicrobial communities atthe JanMayen hydrothermal vent ¢ eld usingRNA andDNA

I. Jonassen, T. Urich, L. Øvreås, 2011 .

The Chemical Defensome of Fish: Conservation and Divergence of Genes Involved in Sensing and Responding to Pollutants Among Five Model Teleosts

I. Jonassen, J. Goldstone, J. Stegeman, 2021 .

Identifying predictors of survival in patients with leukemia using single-cell mass cytometry and machine learning

I. Jonassen, B. Gjertsen, J. Schuringa, 2022, bioRxiv.

Mathematical Modelling of Nitric Oxide/Cyclic GMP/Cyclic AMP Signalling in Platelets

I. Jonassen, S. Døskeland, R. Kleppe, 2018, International journal of molecular sciences.

Whole genome sequencing of the fish pathogen Francisella noatunensis subsp. orientalis Toba04 gives novel insights into Francisella evolution and pathogenecity

I. Jonassen, F. Nilsen, H. Kongshaug, 2012, BMC Genomics.

Specific cellular signal-transduction responses to in vivo combination therapy with ATRA, valproic acid and theophylline in acute myeloid leukemia

I. Jonassen, Ø. Bruserud, J. Skavland, 2011, Blood cancer journal.

Appendix A: Basics in Mathematics, Probability and Algorithms

William R. Taylor, Inge Jonassen, Ingvar Eidhammer, 2012 .

Multiple Global Alignment and Phylogenetic Trees

William R. Taylor, Inge Jonassen, Ingvar Eidhammer, 2012 .

Pairwise Global Alignment of Sequences

William R. Taylor, Inge Jonassen, Ingvar Eidhammer, 2012 .

Exploring the limits of fold discrimination by structural alignment: A large scale benchmark using decoys of known fold

William R. Taylor, Inge Jonassen, Michael I. Sadowski, 2011, Comput. Biol. Chem..

Multiple Structure Comparison

William R. Taylor, Inge Jonassen, Ingvar Eidhammer, 2012 .

Structure Prediction: Threading

William R. Taylor, Inge Jonassen, Ingvar Eidhammer, 2012 .

Functional involvement of RINF, retinoid-inducible nuclear factor (CXXC5), in normal and tumoral human myelopoiesis.

I. Jonassen, M. Lanotte, J. Lillehaug, 2009, Blood.

Tumorigenesis and Neoplastic Progression Gene Expression Patterns Related to Vascular Invasion and Aggressive Features in Endometrial Cancer

T. H. Bø, I. Jonassen, K. Kalland, 2011 .

Proteogenomics of Non-smoking Lung Cancer in East Asia Delineates Molecular Signatures of Pathogenesis and Progression

I. Jonassen, Yi-Ju Chen, Yih-Leong Chang, 2020, Cell.

DNA extraction replicates improve diversity and compositional dissimilarity in metabarcoding of eukaryotes in marine sediments

I. Jonassen, E. Thompson, A. Lanzén, 2017, PloS one.

Early response evaluation by single cell signaling profiling in acute myeloid leukemia

I. Jonassen, N. Aghaeepour, T. Tvedt, 2022, Nature Communications.

The chemical defensome of five model teleost fish

I. Jonassen, J. Goldstone, J. Stegeman, 2021, Scientific Reports.

Algorithms in Bioinformatics

Inge Jonassen, Junhyong Kim, I. Jonassen, 2004, Lecture Notes in Computer Science.

RNA-Seq analysis of transcriptome responses in Atlantic cod (Gadus morhua) precision-cut liver slices exposed to benzo[a]pyrene and 17α-ethynylestradiol.

Nello Blaser, Inge Jonassen, Anders Goksøyr, 2018, Aquatic toxicology.

A novel approach to co-expression network analysis identifies modules and genes relevant for moulting and development in the Atlantic salmon louse (Lepeophtheirus salmonis)

I. Jonassen, M. Dondrup, F. Nilsen, 2021, BMC genomics.

Novel SLC19A3 Promoter Deletion and Allelic Silencing in Biotin-Thiamine-Responsive Basal Ganglia Encephalopathy

I. Jonassen, S. Johansson, L. Bindoff, 2016, PloS one.

InterPro : An integrated documentation resource for protein families , domains and functional sites The InterPro Consortium :

Alex Bateman, Rolf Apweiler, Beate Marx, 2005 .

Evaluation of a eukaryote phylogenetic microarray for environmental monitoring of marine sediments.

I. Jonassen, E. Thompson, A. Lanzén, 2020, Marine pollution bulletin.

The salmon louse genome: copepod features and parasitic adaptations

I. Jonassen, P. Kersey, R. Reinhardt, 2021, bioRxiv.

Gene expression profiling of minor salivary glands clearly distinguishes primary Sjögren's syndrome patients from healthy control subjects.

I. Jonassen, R. Jonsson, A. Bolstad, 2005, Arthritis and rheumatism.

Tumour-associated glial host cells display a stem-like phenotype with a distinct gene expression profile and promote growth of GBM xenografts

I. Jonassen, K. Kalland, K. Petersen, 2017, BMC Cancer.

Analysis of Gene‐Expression Data Using J‐Express

Kjell Petersen, Inge Jonassen, Bjarte Dysvik, 2008, Current protocols in bioinformatics.

Angiogenesis-independent tumor growth mediated by stem-like cancer cells

I. Jonassen, P. Sminia, K. Kalland, 2006, Proceedings of the National Academy of Sciences.

Gene Set Based Integrated Data Analysis Reveals Phenotypic Differences in a Brain Cancer Model

I. Jonassen, K. Kalland, S. Niclou, 2013, PLoS ONE.

Integrated genomic profiling of endometrial carcinoma associates aggressive tumors with indicators of PI3 kinase activation

I. Jonassen, G. Getz, M. Meyerson, 2009, Proceedings of the National Academy of Sciences.

Pattern Discovery in Biosequences

Esko Ukkonen, Inge Jonassen, Jaak Vilo, 1998, ICGI.

XHM: A system for detection of potential cross hybridizations in DNA microarrays

Inge Jonassen, Astrid Lægreid, Kristian Flikka, 2004, BMC Bioinformatics.

Characterization of Early Stages of Human B Cell Development by Gene Expression Profiling1

Inge Jonassen, Andreas Rosenwald, L. Staudt, 2007, The Journal of Immunology.

CD34 expression in native human acute myelogenous leukemia blasts: Differences in CD34 membrane molecule expression are associated with different gene expression profiles

T. H. Bø, I. Jonassen, Ø. Bruserud, 2005, Cytometry. Part B, Clinical cytometry.

Masking repeats while clustering ESTs

Inge Jonassen, Ketil Malde, Eivind Coward, 2005, Nucleic acids research.

Filtering duplicate reads from 454 pyrosequencing data

Inge Jonassen, Ketil Malde, Markus A. Grohme, 2013, Bioinform..

Genome-Wide Profiling of Histone H3 Lysine 4 and Lysine 27 Trimethylation Reveals an Epigenetic Signature in Prostate Carcinogenesis

Yi Qu, Inge Jonassen, Varda Rotter, 2009, PloS one.

Sequencing the genome of the Atlantic salmon (Salmo salar)

Steven J. M. Jones, I. Jonassen, A. Maass, 2010, Genome Biology.

Sequencing the genome of the Atlantic salmon

Steven J. M. Jones, I. Jonassen, A. Maass, 2010 .

Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data

Esko Ukkonen, Alan J. Robinson, Inge Jonassen, 2000, ISMB.

Exome Sequencing and Genetic Testing for MODY

J. Aerts, I. Jonassen, S. Levy, 2012, PloS one.

Functional involvement of RINF , Retinoid-Inducible Nuclear Factor ( CXXC 5 ) , in normal and tumoral human myelopoiesis Short title : RINF expression is required for myelopoiesis

I. Jonassen, M. Lanotte, J. Lillehaug, 2009 .

J-Express: exploring gene expression data using Java

Inge Jonassen, B. Dysvik, I. Jonassen, 2001, Bioinform..

Deblender: a semi−/unsupervised multi-operational computational method for complete deconvolution of expression data from heterogeneous samples

Inge Jonassen, Konstantina Dimitrakopoulou, Elisabeth Wik, 2018, BMC Bioinformatics.

Structure Motif Discovery and Mining the PDB

William R. Taylor, Inge Jonassen, Darrell Conklin, 2002, German Conference on Bioinformatics.

Gene expression profiles in prostate cancer: association with patient subgroups and tumour differentiation.

Inge Jonassen, Laila Stordrange, Bruz Marzolf, 2005, International journal of oncology.

Common gene expression signatures in Parkinson’s disease are driven by changes in cell composition

I. Jonassen, O. Tysnes, K. Petersen, 2019, bioRxiv.

Application of quantitative transcriptomics in evaluating the ex vivo effects of per- and polyfluoroalkyl substances on Atlantic cod (Gadus morhua) ovarian physiology.

E. M. Hanna, I. Jonassen, A. Arukwe, 2020, The Science of the total environment.

Quantitative transcriptomics, and lipidomics in evaluating ovarian developmental effects in Atlantic cod (Gadus morhua) caged at a capped marine waste disposal site.

E. M. Hanna, I. Jonassen, A. Arukwe, 2020, Environmental research.

Characteristics of 454 pyrosequencing data—enabling realistic simulation with flowsim

Inge Jonassen, Ketil Malde, Animesh Sharma, 2010, Bioinform..

Linkage-disequilibrium-based binning affects the interpretation of GWASs.

Inge Jonassen, Manuel Mattheisen, Morten Mattingsdal, 2012, American journal of human genetics.

Tumor necrosis is an important hallmark of aggressive endometrial cancer and associates with hypoxia, angiogenesis and inflammation responses

T. H. Bø, I. Jonassen, K. Kalland, 2015, Oncotarget.

Machine Learning Approaches for Biomarker Discovery Using Gene Expression Data

Inge Jonassen, Anders Goksøyr, Xiaokang Zhang, 2021, Bioinformatics.

ReCodLiver0.9: Overcoming Challenges in Genome-Scale Metabolic Reconstruction of a Non-model Species

Daniel C. Zielinski, Inge Jonassen, Anders Goksøyr, 2020, bioRxiv.

Characterization of the 18S rRNA Gene for Designing Universal Eukaryote Specific Primers

I. Jonassen, E. Thompson, A. Lanzén, 2014, PloS one.

Gene co-expression networks identify novel candidate genes for moulting and development in the Atlantic salmon louse (Lepeophtheirus salmonis)

I. Jonassen, M. Dondrup, F. Nilsen, 2021, bioRxiv.

CREST – Classification Resources for Environmental Sequence Tags

Daniel H. Huson, Tim Urich, Inge Jonassen, 2012, PloS one.

Methods for Finding Motifs in Sets of Related Biosequences

Inge Jonassen, I. Jonassen, 1996 .

Systematic exploration of error sources in pyrosequencing flowgram data

Inge Jonassen, Ketil Malde, Susanne Balzer, 2011, Bioinform..

Characteristics of 454 pyrosequencing data - enabling realistic simulation with flowsim

Inge Jonassen, Ketil Malde, Animesh Sharma, 2011, Bioinform..

How does sequence variability affect de novo assembly quality?

I. Jonassen, R. Reinhardt, B. Koop, 2013 .

Reconstructing ribosomal genes from large scale total RNA meta-transcriptomic data

Inge Jonassen, Anders Lanzén, Yaxin Xue, 2020, Bioinform..

Comprehensive characterization of copy number variation (CNV) called from array, long- and short-read data

I. Jonassen, S. Johansson, Ksenia Lavrichenko, 2021, BMC genomics.

Comparison of nucleic acid targets prepared from total RNA or poly(A) RNA for DNA oligonucleotide microarray hybridization.

T. H. Bø, I. Jonassen, O. Halvorsen, 2007, Analytical biochemistry.

RASflow: an RNA-Seq analysis workflow with Snakemake

Xiaokang Zhang, Inge Jonassen, I. Jonassen, 2019, BMC Bioinformatics.

Guest Editorial: WABI Special Section Part II

Inge Jonassen, Junhyong Kim, I. Jonassen, 2005, TCBB.

BioXSD | BioJSON | BioYAML – towards unified formats for sequences, alignments, features, and annotations

Christophe Blanchet, Inge Jonassen, László Kaján, 2016 .

Integrative Models for the Prediction and Understanding of Protein Structure Patterns

Inge Jonassen, I. Jonassen, 2005, Data Analysis and Visualization in Genomics and Proteomics.

Prediction of protein structure from ideal forms

William R Taylor, Inge Jonassen, Tom Sheldon, 2008, Proteins.

Guest Editorial: WABI Special Section Part 1

Inge Jonassen, Junhyong Kim, I. Jonassen, 2004, TCBB.

Dynamic domain threading

William R Taylor, Franca Fraternali, Inge Jonassen, 2006, Proteins.

Development and testing of an 18S rRNA phylogenetic microarray for marine sediments.

I. Jonassen, E. Thompson, Katrine Lekang, 2018, Journal of microbiological methods.

Predicting gene regulatory elements from their expression data in the complete yeast genome

Esko Ukkonen, Inge Jonassen, Jaak Vilo, 1998, German Conference on Bioinformatics.

RBR: library-less repeat detection for ESTs

Inge Jonassen, Ketil Malde, Eivind Coward, 2006, Bioinform..

Using Deep Learning to Extrapolate Protein Expression Measurements

Edgars Celms, Juan Antonio Vizcaíno, Lelde Lace, 2020, Proteomics.

Approaches to the Automatic Discovery of Patterns in Biosequences

David R. Gilbert, Inge Jonassen, Alvis Brazma, 1998, J. Comput. Biol..

Efficient discovery of conserved patterns using a pattern graph

Inge Jonassen, I. Jonassen, 1997, Comput. Appl. Biosci..

RareVariantVis: new tool for visualization of causative variants in rare monogenic disorders using whole genome sequencing data

Tomasz Stokowy, Mateusz Garbulowski, Torunn Fiskerstrand, 2016, Bioinform..

Association of nucleotide patterns with gene function classes: application to human 3' untranslated sequences

William R. Taylor, Inge Jonassen, Darrell Conklin, 2002, Bioinform..

EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats

Steve Pettifer, Dan M. Bolser, Rodrigo Lopez, 2013, Bioinform..

An Ensemble Feature Selection Framework Integrating Stability

Xiaokang Zhang, Inge Jonassen, I. Jonassen, 2018, 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Expression of Nestin associates with BRCA1 mutations, a basal-like phenotype and aggressive breast cancer

I. Jonassen, T. Aas, J. Bergh, 2017, Scientific Reports.

LOCATOR: feature extraction and spatial analysis of the cancer tissue microenvironment using mass cytometry imaging technologies

I. Jonassen, L. Akslen, Rezvan Ehsani, 2023, bioRxiv.

Integrative omics-analysis of lipid metabolism regulation by peroxisome proliferator-activated receptor a and b agonists in male Atlantic cod

I. Jonassen, P. Bruheim, G. Alendal, 2023, Frontiers in Physiology.

The bio.tools registry of software tools and data resources for the life sciences

Arlindo L. Oliveira, Rob W.W. Hooft, S. Brunak, 2019, Genome Biology.

Protected sampling is preferable in bronchoscopic studies of the airway microbiome

I. Jonassen, P. Bakke, H. Wiker, 2017, ERJ Open Research.

Correction: Modulation of Transcriptional and Inflammatory Responses in Murine Macrophages by the Mycobacterium tuberculosis Mammalian Cell Entry (Mce) 1 Complex

I. Jonassen, J. Assmus, E. Ulvestad, 2011, PLoS ONE.

Modulation of Transcriptional and Inflammatory Responses in Murine Macrophages by the Mycobacterium tuberculosis Mammalian Cell Entry (Mce) 1 Complex

I. Jonassen, J. Assmus, E. Ulvestad, 2011, PloS one.

Tumor classification and marker gene prediction by feature selection and fuzzy c-means clustering using microarray data

Eivind Hovig, Inge Jonassen, Junbai Wang, 2003, BMC Bioinformatics.

A graph based algorithm for generating EST consensus sequences

Inge Jonassen, Ketil Malde, Eivind Coward, 2005, Bioinform..

Distributed and interactive visual analysis of omics data.

Frode S Berven, Harald Barsnes, Kjell Petersen, 2015, Journal of proteomics.

Algorithms in bioinformatics : 4th International Workshop, WABI 2004, Bergen, Norway, September 17-21, 2004 : proceedings

I. Jonassen, Junhyong Kim, 2004 .

Whole genome resequencing reveals diagnostic markers for investigating global migration and hybridization between minke whale species

I. Jonassen, H. Solvang, K. Glover, 2017, BMC Genomics.

Mycobacterium tuberculosis Mce1 protein complex initiates rapid induction of transcription of genes involved in substrate trafficking

I. Jonassen, E. Ulvestad, L. Riley, 2012, Genes and Immunity.

BioXSD: the common data-exchange format for everyday bioinformatics web services

Steve Pettifer, Armin Töpfer, Jon C. Ison, 2010, Bioinform..

A Constraint Based Structure Description Language for Biosequences

David R. Gilbert, Inge Jonassen, Ingvar Eidhammer, 2001, Constraints.

SeeCiTe: a method to assess CNV calls from SNP arrays using trio data

Inge Jonassen, Ksenia Lavrichenko, Øyvind Helgeland, 2020, bioRxiv.

The bio.tools registry of software tools and data resources for the life sciences

Hedi Peterson, Tomáš Raček, Radka Svobodová Vařeková, 2019, Genome Biology.

Norwegian e-Infrastructure for Life Sciences (NeLS)

Finn Drabløs, Eivind Hovig, Wei Zhang, 2018, F1000Research.

Norwegian e-Infrastructure for Life Sciences ( NeLS ) [ version 1 ; peer review : 2 approved ]

Kidane M. Tekle, D. I. Våge, I. Jonassen, 2021 .

The EMBRACE web service collection

Terri K. Attwood, Jon C. Ison, Vincent Breton, 2010, Nucleic Acids Res..

A Comparative Analysis of Feature Selection Methods for Biomarker Discovery in Study of Toxicant-treated Atlantic Cod (Gadus morhua) Liver

Xiaokang Zhang, Inge Jonassen, I. Jonassen, 2017, NAIS.

Comprehensive characterization of copy number variation (CNV) called from array, long- and short-read data

I. Jonassen, S. Johansson, Ksenia Lavrichenko, 2021, BMC genomics.

LOCATOR: feature extraction and spatial analysis of the cancer tissue microenvironment using mass cytometry imaging technologies

I. Jonassen, L. Akslen, Dimitrios Kleftogiannis, 2023, bioRxiv.

Discovery of putative transcription factor binding sites from microarray-based gene expression profiles

I. Jonassen, A. Brazma, J. Vilo, 1999, Nature Genetics.

Structure Comparison and Structure Patterns

William R. Taylor, Inge Jonassen, Ingvar Eidhammer, 2000, J. Comput. Biol..

Functional involvement of RINF, retinoid-inducible nuclear factor (CXXC5), in normal and tumoral human myelopoiesis.

I. Jonassen, M. Lanotte, J. Lillehaug, 2009, Blood.

The genome sequence of Atlantic cod reveals a unique immune system

James R. Knight, Bronwen L. Aken, K. G. Tina, 2011, Nature.

Gene expression patterns related to vascular invasion and aggressive features in endometrial cancer.

I. Jonassen, K. Kalland, L. Akslen, 2011, The American journal of pathology.

New feature subset selection procedures for classification of expression profiles

T. H. Bø, I. Jonassen, 2002, Genome Biology.

Repeated bronchoscopy in health and obstructive lung disease: is the airway microbiome stable?

I. Jonassen, P. Bakke, R. Nielsen, 2021, BMC Pulmonary Medicine.