W. Wong

发表

Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection.

C. Li, W. Wong, Cheng Li, 2001, Proceedings of the National Academy of Sciences of the United States of America.

Analyzing high‐density oligonucleotide gene expression array data

C. Li, W. Wong, E. Schadt, 2001, Journal of cellular biochemistry.

Detection of splice junctions from paired-end RNA-seq data by SpliceMap

Y. Xing, W. Wong, K. Au, 2010, Nucleic acids research.

Modeling non-uniformity in short-read rates in RNA-Seq data

W. Wong, Jun Li, Hui Jiang, 2010, Genome Biology.

GoSurfer: a graphical interactive tool for comparative analysis of large gene sets in Gene Ontology space.

W. Wong, Sheng Zhong, Kai-Florian Storch, 2004, Applied bioinformatics.

An Integrated Encyclopedia of DNA Elements in the Human Genome

Raymond K. Auerbach, William Stafford Noble, Stephen C. J. Parker, 2012, Nature.

An Integrated Software System for Analyzing Chip-chip and Chip-seq Data (supplementary Information)

R. Myers, W. Wong, Hongkai Ji, 2008 .

Extensive and deep sequencing of the Venter/HuRef genome for developing and benchmarking genome analysis tools

Bo Zhou, Joseph G Arthur, Steve S Ho, 2018, Scientific Data.

Leveraging long read sequencing from a single individual to provide a comprehensive resource for benchmarking variant calling methods

Hugo Y. K. Lam, M. Gerstein, X. Chen, 2015, Scientific Reports.

A gene signature predictive for outcome in advanced ovarian cancer identifies a survival factor: microfibril-associated glycoprotein 2.

W. Wong, R. Berkowitz, J. Barrett, 2009, Cancer cell.

Transitive functional annotation by shortest-path analysis of gene expression data

W. Wong, X. Zhou, M. Kao, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Recursive Sample Classification and Gene Selection based on SVM: Method and Software Description #

Xuegong Zhang, Wing Hung Wong, Xuegong Zhang, 2001 .

Functional annotation and network reconstruction through cross-platform integration of microarray data

W. Wong, Juan Nunez-Iglesias, Haiyan Huang, 2005, Nature Biotechnology.

Probe Selection and Expression Index Computation of Affymetrix Exon Arrays

Y. Xing, W. Wong, K. Kapur, 2006, PloS one.

Feature extraction and normalization algorithms for high‐density oligonucleotide gene expression array data

C. Li, W. Wong, E. Schadt, 2001, Journal of cellular biochemistry. Supplement.

Assessing the conservation of mammalian gene expression using high-density exon arrays.

Y. Xing, M. Scott, W. Wong, 2007, Molecular biology and evolution.

Determination of Local Statistical Significance of Patterns in Markov Sequences with Application to Promoter Element Identification

Wing Hung Wong, Haiyan Huang, Jun S. Liu, 2004, J. Comput. Biol..

ChIP-Seq of transcription factors predicts absolute and differential gene expression in embryonic stem cells

W. Wong, Qing Zhou, Z. Ouyang, 2009, Proceedings of the National Academy of Sciences.

DeepTACT: predicting 3D chromatin contacts via bootstrapping deep learning

W. Wong, R. Jiang, Wenran Li, 2019, Nucleic acids research.

Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data

Rui Jiang, Yong Wang, Wing Hung Wong, 2017, Nucleic acids research.

Exon arrays provide accurate assessments of gene expression

Yi Xing, Wing Hung Wong, Karen Kapur, 2007, Genome Biology.

Molecular diversity of astrocytes with implications for neurological disorders.

W. Wong, C. Brennan, R. DePinho, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Modeling gene regulation from paired expression and chromatin accessibility data

W. Wong, R. Jiang, Yong Wang, 2017, Proceedings of the National Academy of Sciences.

A comparative analysis of genome-wide chromatin immunoprecipitation data for mammalian transcription factors

Hongkai Ji, Wing H. Wong, W. Wong, 2006, Nucleic acids research.

Chromatin accessibility landscape and regulatory network of high-altitude hypoxia adaptation

W. Wong, Yong Wang, B. Su, 2020, Nature Communications.

data to detect putative modifications to DNA bases Modeling kinetic rate variation in third generation DNA sequencing

Tyson A. Clark, A. Kasarskis, J. Korlach, 2012 .

De novo discovery of a tissue-specific gene regulatory module in a chordate.

A. Sidow, W. Wong, David S. Johnson, 2005, Genome research.

Expression profiling of serous low malignant potential, low-grade, and high-grade tumors of the ovary.

Wing H Wong, Ke Hao, Anil K Sood, 2005, Cancer research.

Recombinatoric exploration of novel folded structures: A heteropolymer-based model of protein evolutionary landscapes

Erich Bornberg-Bauer, Hue Sun Chan, Wing Hung Wong, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Human transcriptome array for high-throughput clinical studies

John D. Storey, Tyson A. Clark, A. Schweitzer, 2011, Proceedings of the National Academy of Sciences.

SMAD4-dependent barrier constrains prostate cancer growth and metastatic progression

Gerald C. Chu, T. Golub, L. Chin, 2011, Nature.

CRISPhieRmix: a hierarchical mixture model for CRISPR pooled screens

Lei S. Qi, W. Wong, L. Qi, 2018, Genome Biology.

Six2 and Wnt regulate self-renewal and commitment of nephron progenitors through shared gene regulatory networks.

Wing Hong Wong, W. Wong, A. McMahon, 2012, Developmental cell.

Characterization of fusion genes and the significantly expressed fusion isoforms in breast cancer by hybrid sequencing

Tyson A. Clark, J. Korlach, W. Wong, 2015, Nucleic acids research.

A gene regulatory network in mouse embryonic stem cells

W. Wong, D. Melton, Qing Zhou, 2007, Proceedings of the National Academy of Sciences.

Unsupervised clustering and epigenetic classification of single cells

Alicia N. Schep, W. Wong, W. Greenleaf, 2017, Nature Communications.

Computational Biology: Toward Deciphering Gene Regulatory Information in Mammalian Genomes

W. Wong, Hongkai Ji, W. Wong, 2006, Biometrics.

CisModule: de novo discovery of cis-regulatory modules by hierarchical mixture modeling.

W. Wong, Qing Zhou, W. Wong, 2004, Proceedings of the National Academy of Sciences of the United States of America.

An ensemble approach to accurately detect somatic mutations using SomaticSeq

Hugo Y. K. Lam, M. Gerstein, W. Wong, 2015, Genome Biology.

Improving PacBio Long Read Accuracy by Short Read Alignment

W. Wong, J. Underwood, K. Au, 2012, PloS one.

Using CisGenome to Analyze ChIP‐chip and ChIP‐seq Data

Wing Hung Wong, Hongkai Ji, Hui Jiang, 2011, Current protocols in bioinformatics.

HumanUpstream and MouseUpstream: databases of promoter sequences in the human and mouse genomes.

W. Wong, M. Kao, I. Leykin, 2005, Omics : a journal of integrative biology.

Reconstructing the Energy Landscape of a Distribution from Monte Carlo Samples

Wing Hung Wong, Qing Zhou, W. Wong, 2008, 0901.3999.

Equi-energy sampler with applications in statistical inference and statistical mechanics

S. Kou, W. Wong, Qing Zhou, 2005, math/0507080.

Coupling Hidden Markov Models for the Discovery of Cis-Regulatory Modules in Multiple Species

W. Wong, Qing Zhou, W. Wong, 2007, 0708.4318.

A study of density of states and ground states in hydrophobic-hydrophilic protein folding models by equi-energy sampling.

Wing Hung Wong, S C Kou, S. Kou, 2006, The Journal of chemical physics.

Rejoinder to "Equi-energy sampler with applications in statistical inference and statistical mechanics"

S. Kou, W. Wong, Qing Zhou, 2006, math/0611224.

transcriptome over development Xenopus tropicalis RNA sequencing reveals diverse and dynamic repertoire of the

Jason Chuang, W. Wong, K. Au, 2012 .

A method for scoring the cell type-specific impacts of noncoding variants in personal genomes

W. Wong, R. Jiang, Wenran Li, 2020, Proceedings of the National Academy of Sciences.

Time course regulatory analysis based on paired expression and chromatin accessibility data

W. Wong, Zhana Duren, Xi Chen, 2020, Genome research.

Modeling regulatory network topology improves genome-wide analyses of complex human traits

W. Wong, Zhana Duren, Xiang Zhu, 2020, Nature Communications.

Network effects of the neuropsychiatric 15q13.3 microdeletion on the transcriptome and epigenome in human induced neurons

W. Wong, A. Urban, J. Hallmayer, 2019, bioRxiv.

Deep phenotyping to predict live birth outcomes in in vitro fertilization

W. Wong, M. Yao, L. Westphal, 2010, Proceedings of the National Academy of Sciences.

Defining Human Embryo Phenotypes by Cohort-Specific Prognostic Factors

W. Wong, R. R. Reijo Pera, M. Yao, 2008, PloS one.

The primate-specific noncoding RNA HPAT5 regulates pluripotency during human preimplantation development and nuclear reprogramming

Wing H Wong, Kin Fai Au, Vittorio Sebastiano, 2015, Nature Genetics.

Coupling Hidden Markov Models for the Discovery of Cis-Regulatory Modules in Multiple Species

W. Wong, Qing Zhou, 2007, 0708.4318.

The analysis of ChIP-Seq data.

W. Wong, Wenxiu Ma, W. Wong, 2011, Methods in enzymology.

Role of Epidermal Growth Factor Receptor Signaling in RAS-Driven Melanoma

L. Chin, W. Wong, Jin Xu, 2005, Molecular and Cellular Biology.

Haplotype-resolved and integrated genome analysis of the cancer cell line HepG2

Hanlee P. Ji, John M. Bell, W. Wong, 2019, Nucleic acids research.

Haplotype-resolved and integrated genome analysis of the cancer cell line HepG2

Hanlee P. Ji, John M. Bell, W. Wong, 2018, bioRxiv.

Extensive and deep sequencing of the Venter/HuRef genome for developing and benchmarking genome analysis tools

W. Wong, A. Urban, Bo Zhou, 2018, Scientific Data.

Comprehensive, integrated, and phased whole-genome analysis of the primary ENCODE cell line K562

Hanlee P. Ji, John M. Bell, W. Wong, 2017, bioRxiv.

Model-based analysis of oligonucleotide arrays and issues in cDNA microarray analysis

Wing Hung Wong, George C. Tseng, G. Tseng, 2003 .

Automatic detection of complex structural genome variation across world populations

Hanlee P. Ji, W. Wong, A. Urban, 2017, bioRxiv.

COSINE: non-seeding method for mapping long noisy sequences

W. Wong, P. T. Afshar, Pegah T. Afshar, 2017, Nucleic acids research.

Complete and haplotype-specific sequence assembly of segmental duplication-mediated genome rearrangements using CRISPR-targeted ultra-long read sequencing (CTLR-Seq)

Hanlee P. Ji, W. Wong, A. Urban, 2020, bioRxiv.

A Small-Molecule Inhibitor of Mps1 Blocks the Spindle-Checkpoint Response to a Lack of Tension on Mitotic Chromosomes

Andrew W. Murray, Wing Hung Wong, Timothy J. Mitchison, 2005, Current Biology.

Rejoinder to "Equi-energy sampler with applications in statistical inference and statistical mechanics"

S. Kou, W. Wong, Qing Zhou, 2006, math/0611224.

Neural-specific Sox2 input and differential Gli-binding affinity provide context and positional information in Shh-directed neural patterning.

Alexander van Oudenaarden, Wing H Wong, Timothy L Bailey, 2012, Genes & development.

DISCUSSION OF “EQUI-ENERGY SAMPLER ” BY KOU,

S. Kou, W. Wong, Q. Zhou, 2006 .

Genetic effects of sequence-conserved enhancer-like elements on human complex traits

W. Wong, Xiang Zhu, Shining Ma, 2022, bioRxiv.

Hedgehog pathway-regulated gene networks in cerebellum development and tumorigenesis

Hongkai Ji, Wing H Wong, Baiyu Zhou, 2010, Proceedings of the National Academy of Sciences.

A unique secreted adenovirus E 3 protein binds to the leukocyte common antigen CD 45 and modulates leukocyte functions

H. V. Bakel, B. Williams, W. Wong, 2013 .

Meta-analysis of peptides to detect protein significance.

Yuping Zhang, Wing Hung Wong, Wei-Jun Qian, 2020, Statistics and its interface.

Personalized prediction of first-cycle in vitro fertilization success.

Wing H Wong, Marie-Claude Leveille, Antonio Pellicer, 2013, Fertility and sterility.

Tight Clustering: A Resampling‐Based Approach for Identifying Stable and Tight Patterns in Data

George C Tseng, Wing H Wong, G. Tseng, 2005, Biometrics.

TileMap: create chromosomal map of tiling array hybridizations

Wing Hung Wong, Hongkai Ji, W. Wong, 2005, Bioinform..

Integrated functional genomic analyses of Klinefelter and Turner syndromes reveal global network effects of altered X chromosome dosage

W. Wong, A. Urban, A. Reiss, 2020, Proceedings of the National Academy of Sciences.

Novel mechanisms of T-cell and dendritic cell activation revealed by profiling of psoriasis on the 63,100-element oligonucleotide array.

Wing Hung Wong, Alan Menter, James G Krueger, 2003, Physiological genomics.

Predicting personalized multiple birth risks after in vitro fertilization-double embryo transfer.

W. Wong, M. Yao, M. Hacker, 2012, Fertility and sterility.

Methodnon-uniformity in short-read rates in RNA-Seq data

Hui Jiang, Jun Li, Wing Hung Wong, 2010 .

A boosting approach for motif modeling using ChIP-chip data

Qing Zhou, Xin Lu, Pengyu Hong, 2005, Bioinform..

Modeling Co-Expression across Species for Complex Traits: Insights to the Difference of Human and Mouse Embryonic Stem Cells

Jun Cai, Sheng Zhong, Dan Xie, 2010, PLoS Comput. Biol..

A genome-scale analysis of the cis-regulatory circuitry underlying sonic hedgehog-mediated patterning of the mammalian limb.

Hongkai Ji, Wing H Wong, Andrew P McMahon, 2008, Genes & development.

Integrative analysis of single-cell genomics data by coupled nonnegative matrix factorizations

Yong Wang, Wing Hung Wong, Howard Y. Chang, 2018, Proceedings of the National Academy of Sciences.

RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development

Jason Chuang, Wing Hung Wong, Kin Fai Au, 2012, Genome research.

Simultaneous Isoform Discovery and Quantification from RNA-Seq

Wing Hung Wong, David Hiller, W. Wong, 2013, Statistics in biosciences.

Recursive SVM feature selection and sample classification for mass-spectrometry and microarray data

Xuegong Zhang, Qian Shi, Wing H Wong, 2006, BMC Bioinformatics.

patterning provide context and positional information in Shh-directed neural Neural-specific Sox 2 input and differential Gli-binding affinity

T. Mikkelsen, A. Oudenaarden, W. Wong, 2012 .

MetaSV: an accurate and integrative structural-variant caller for next generation sequencing

Mark Gerstein, Jian Li, Alexej Abyzov, 2015, Bioinform..

VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications

Mark Gerstein, Jian Li, Alexej Abyzov, 2014, Bioinform..

Simultaneous deep generative modelling and clustering of single-cell genomic data

Qiao Liu, Rui Jiang, Wing Hung Wong, 2020, Nature Machine Intelligence.

DC3 is a method for deconvolution and coupled clustering from bulk and single-cell genomics data

Yong Wang, Wing Hung Wong, Zhana Duren, 2019, Nature Communications.

Statistical Modeling of RNA-Seq Data.

Hui Jiang, Julia Salzman, Wing Hung Wong, 2011, Statistical science : a review journal of the Institute of Mathematical Statistics.

Identifiability of isoform deconvolution from junction arrays and RNA-Seq

Wing Hung Wong, Weihong Xu, Hui Jiang, 2009, Bioinform..

Statistical inferences for isoform expression in RNA-Seq

Wing Hung Wong, Hui Jiang, W. Wong, 2009, Bioinform..

NeuronMotif: Deciphering transcriptional cis-regulatory codes from deep neural networks

W. Wong, R. Jiang, Lei Wei, 2021, bioRxiv.

Modeling the spatio-temporal network that drives patterning in the vertebrate central nervous system.

W. Wong, Hongkai Ji, S. Vokes, 2009, Biochimica et biophysica acta.

Genomic characterization of Gli-activator targets in sonic hedgehog-mediated neural patterning

Andrew P. McMahon, Hongkai Ji, Eric H. Davidson, 2007, Development.

dChipSNP: significance curve and clustering of SNP-array-based loss-of-heterozygosity data

Cheng Li, Ming Lin, Wing Hung Wong, 2004, Bioinform..

SeqMap: mapping massive amount of oligonucleotides to the genome

Wing Hung Wong, Hui Jiang, W. Wong, 2008, Bioinform..

Activation of Innate Immunity Is Required for Efficient Nuclear Reprogramming

W. Wong, K. Au, J. Cooke, 2012, Cell.

A Novel and Critical Role for Oct4 as a Regulator of the Maternal-Embryonic Transition

Wing H. Wong, W. Wong, R. R. Reijo Pera, 2008, PloS one.

Early role for IL-6 signalling during generation of induced pluripotent stem cells revealed by heterokaryon RNA-Seq

W. Wong, H. Blau, S. Suthram, 2013, Nature Cell Biology.

Early role for IL6 signaling in iPS generation revealed by heterokaryon RNA-Seq

W. Wong, H. Blau, S. Suthram, 2013, Nature Cell Biology.

An Oct4-Sall4-Nanog network controls developmental progression in the pre-implantation mouse embryo

Wing H Wong, Kin Fai Au, Wing Hong Wong, 2013, Molecular systems biology.

An Oct 4-Sall 4-Nanog network controls developmental progression in the preimplantation mouse embryo

Wing H Wong, Kin Fai Au, W. Wong, 2013 .

Genome-wide expression analysis reveals dysregulation of myelination-related genes in chronic schizophrenia

W H Wong, K. Davis, J. Buxbaum, 2001, Proceedings of the National Academy of Sciences of the United States of America.

Xrare: a machine learning method jointly modeling phenotypes and genetic evidence for rare disease diagnosis

Keyan Zhao, Wing H Wong, Xin Ma, 2019, Genetics in Medicine.

Array comparative genome hybridization for tumor classification and gene discovery in mouse models of malignant melanoma.

Wing Hung Wong, Lynda Chin, Xuegong Zhang, 2003, Cancer research.

Gene expression profiles of human inner cell mass cells and embryonic stem cells.

Jean Yee Hwa Yang, W. Wong, R. R. Reijo Pera, 2009, Differentiation; research in biological diversity.

Simultaneous inference of phenotype-associated genes and relevant tissues from GWAS data via Bayesian integration of multiple tissue-specific gene networks

Rui Jiang, Wing Hung Wong, Ting Chen, 2017, Journal of molecular cell biology.

Correction: Inferring Loss-of-Heterozygosity from Unpaired Tumors Using High-Density Oligonucleotide SNP Arrays

M. Meyerson, W. Sellers, M. Rubin, 2007, PLoS Comput. Biol..

Inferring Loss-of-Heterozygosity from Unpaired Tumors Using High-Density Oligonucleotide SNP Arrays

Wing Hung Wong, Rameen Beroukhim, Levi A Garraway, 2006, PLoS Comput. Biol..

Inferring Loss-of-Heterozygosity From Tumor-only Samples Using High-Density Oligonucleotide SNP Arrays

Wing Hung Wong, Rameen Beroukhim, Edward A. Fox, 2022 .

Identification of DNA copy number changes in microdissected serous ovarian cancer tissue using a cDNA microarray platform.

W. Wong, R. Berkowitz, M. Birrer, 2004, Cancer genetics and cytogenetics.

Feedback Regulation between Initiation and Maturation Networks Orchestrates the Chromatin Dynamics of Epidermal Lineage Commitment

Howard Y. Chang, Samantha N. Piekos, Eric J. Liaw, 2018, bioRxiv.

Characterization of the human ESC transcriptome by hybrid sequencing

Wing Hung Wong, Eric E Schadt, Kin Fai Au, 2013, Proceedings of the National Academy of Sciences.

An improved distance measure between the expression profiles linking co-expression and co-regulation in mouse

Ryung S. Kim, Wing Hung Wong, Hongkai Ji, 2006, BMC Bioinformatics.

DeepTACT: predicting high-resolution chromatin contacts via bootstrapping deep learning

Wing Hung Wong, Wenran Li, Rui Jiang, 2018, bioRxiv.

CisGenome Browser: a flexible tool for genomic data visualization

Fan Wang, Wing Hung Wong, Hui Jiang, 2010, Bioinform..

Detecting DNA Modifications from SMRT Sequencing Data by Modeling Sequence Context Dependence of Polymerase Kinetic

Gang Fang, Xuegong Zhang, Wing Wong, 2013, PLoS Comput. Biol..

Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases

Tyson A. Clark, A. Kasarskis, J. Korlach, 2013, Genome research.

CancerDetector: ultrasensitive and non-invasive cancer detection at the resolution of individual reads using cell-free DNA methylation sequencing data

Frank Alber, Wing Hung Wong, Xianghong Jasmine Zhou, 2018, Nucleic acids research.

DNA-Chip Analyzer (dChip)

Cheng Li, Wing Hung Wong, W. Wong, 2003 .

Tyrosine kinase inhibitors induce mitochondrial dysfunction during cardiomyocyte differentiation through alteration of GATA4-mediated networks

L. Steinmetz, W. Wong, M. Snyder, 2020, bioRxiv.

Learning a nonlinear dynamical system model of gene regulation: A perturbed steady-state approach

Wing Hung Wong, Arwen V. Bradley, W. Wong, 2012, 1207.3137.

Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis

Hugo Y. K. Lam, M. Gerstein, Hagen U. Tilgner, 2017, Nature Communications.

A New FACS Approach Isolates hESC Derived Endoderm Using Transcription Factors

W. Wong, Z. Ouyang, J. Baker, 2011, PloS one.

Using high-density exon arrays to profile gene expression in closely related species

Junhee Seok, Yi Xing, Wing Hung Wong, 2009, Nucleic acids research.

Cross-hybridization modeling on Affymetrix exon arrays

Wing Hung Wong, Yi Xing, Hui Jiang, 2008, Bioinform..

MADS: a new and improved method for analysis of differential alternative splicing by exon-tiling microarrays.

Hui Jiang, Douglas L Black, Yi Xing, 2008, RNA.

Low-level analysis of oligonucleotide expression arrays

Wing Hung Wong, Xuemin Fang, Cheng Li, 2005 .

Analysis of factorial time-course microarrays with application to a clinical study of burn injury

Wing Hung Wong, Baiyu Zhou, Wenzhong Xiao, 2010, Proceedings of the National Academy of Sciences.

Phased Genome Sequencing Through Chromosome Sorting.

W. Wong, Xi Chen, Hong Yang, 2017, Methods in molecular biology.

ACCURATE CONSTRUCTION OF LONG RANGE HAPLOTYPE IN UNRELATED INDIVIDUALS

Nicholas A. Johnson, Hua Tang, W. Wong, 2014 .

Completely phased genome sequencing through chromosome sorting

Wing Hung Wong, W. Wong, Xi Chen, 2010, Proceedings of the National Academy of Sciences.

Comparative linkage analysis and visualization of high-density oligonucleotide SNP array data

Wing Hung Wong, Carsten Rosenow, W. Wong, 2005, BMC Genetics.

Insights into the multistep transformation of MGUS to myeloma using microarray expression analysis.

Gonzalez, W. Wong, G. Morgan, 2003, Blood.

MetaSV: an accurate method-aware merging algorithm for structural variations

Hugo Y. K. Lam, M. Gerstein, W. Wong, 2014 .

oligonucleotide array revealed by profiling of psoriasis on the 63,100-element Novel mechanisms of T-cell and dendritic cell activation

W. Wong, A. Bowcock, X. Zhou, 2016 .

GeneNotes – A novel information management software for biologists

Pengyu Hong, Wing Hung Wong, W. Wong, 2005, BMC Bioinformatics.

Identification of genes regulated by 2-methoxyestradiol (2ME2) in multiple myeloma cells using oligonucleotide arrays.

W. Wong, D. Auclair, N. Munshi, 2003, Blood.

Modeling stochastic noise in gene regulatory systems

Wing Hung Wong, Chao Du, Ye Henry Li, 2014, Quantitative Biology.

Network Effects of the 15q13.3 Microdeletion on the Transcriptome and Epigenome in Human-Induced Neurons

W. Wong, A. Urban, R. Pattni, 2020, Biological Psychiatry.

ChipInfo: software for extracting gene annotation and gene ontology information for microarray analysis

Sheng Zhong, Cheng Li, Wing Hung Wong, 2003, Nucleic Acids Res..

Comparative analysis of gene sets in the gene ontology space under the multiple hypothesis testing framework

W. Wong, Cheng Li, Sheng Zhong, 2004, Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004..

DeepCAGE: Incorporating Transcription Factors in Genome-wide Prediction of Chromatin Accessibility

Xuegong Zhang, W. Wong, R. Jiang, 2022, Genom. Proteom. Bioinform..

Modeling the causal regulatory network by integrating chromatin accessibility and transcriptome data.

Rui Jiang, Wing Hung Wong, Yong Wang, 2016, National science review.

Dissecting Early Differentially Expressed Genes in a Mixture of Differentiating Embryonic Stem Cells

Sheng Zhong, Feng Hong, Xuming He, 2009, PLoS Comput. Biol..

Roundtrip: A Deep Generative Neural Density Estimator

W. Wong, R. Jiang, Qiao Liu, 2020, ArXiv.

TFAP2C- and p63-Dependent Networks Sequentially Rearrange Chromatin Landscapes to Drive Human Epidermal Lineage Commitment.

Howard Y. Chang, Samantha N. Piekos, Eric J. Liaw, 2019, Cell stem cell.

Human tRNA synthetase catalytic nulls with diverse functions

W. Wong, K. Au, K. Chiang, 2014, Science.

Molecular classification of liver cirrhosis in a rat model by proteomics and bioinformatics

Xin Lu, Arndt Asperger, Xuegong Zhang, 2004, Proteomics.

Detect and adjust for population stratification in population-based association study using genomic control markers: an application of Affymetrix Genechip® Human Mapping 10K array

W. Wong, C. Rosenow, Cheng Li, 2004, European Journal of Human Genetics.

Integrated analysis of microarray data and gene function information.

Mi Zhou, Wing Hung Wong, Yan Cui, 2004, Omics : a journal of integrative biology.

Fast and accurate read alignment for resequencing

Wing Hung Wong, Hui Jiang, Marghoob Mohiyuddin, 2012, Bioinform..

Revealing Free Energy Landscape from MD Data via Conditional Angle Partition Tree

W. Wong, Xiaodan Fan, Han Li, 2021, bioRxiv.

Reliable prediction of transcription factor binding sites by phylogenetic verification.

Wing H Wong, Xiaoman Li, W. Wong, 2005, Proceedings of the National Academy of Sciences of the United States of America.

A BOOTSTRAP-BASED NON-PARAMETRIC ANOVA METHOD WITH APPLICATIONS TO FACTORIAL MICROARRAY DATA

Wing Hung Wong, Baiyu Zhou, W. Wong, 2011 .

Towards ubiquitous bio-information computing: data protocols, middleware, and Web services for heterogeneous biological information integration and retrieval

Sheng Zhong, Pengyu Hong, Wing Hung Wong, 2004, Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering.

Learning regulatory programs by threshold SVD regression

Luo Xiao, Wing Hung Wong, Xin Ma, 2014, Proceedings of the National Academy of Sciences.