S. O’Brien

S. O’Brien, C. Winkler, J. Zagury, 1998, Journal of acquired immune deficiency syndromes and human retrovirology : official publication of the International Retrovirology Association.

New class I and II HLA alleles strongly associated with opposite patterns of progression to AIDS.

S O'Brien, J M Andrieu, M. Carrington, 1999, Journal of immunology.

Genetic influence of CXCR6 chemokine receptor alleles on PCP-mediated AIDS progression among African Americans

T. Beaty, S. O’Brien, D. Vlahov, 2003, Genes and Immunity.

Dominant Effects of CCR2-CCR5 Haplotypes in HIV-1 Disease Progression

Jay Rappaport, Jean-François Zagury, Wei Lu, 2004, Journal of acquired immune deficiency syndromes.

Common Genetic Variation and the Control of HIV-1 in Humans

Elizabeth T. Cirulli, Huldrych F. Günthard, Jacques Fellay, 2009, PLoS genetics.

Genetic associations of variants in genes encoding HIV-dependency factors required for HIV-1 infection.

Stephen J O'Brien, James J Goedert, J. Goedert, 2010, The Journal of infectious diseases.

Innovative assembly strategy contributes to understanding the evolution and conservation genetics of the endangered Solenodon paradoxus from the island of Hispaniola

S. O’Brien, A. Roca, A. Antunes, 2018, GigaScience.

Innovative assembly strategy contributes to the understanding of evolution and conservation genetics of the critically endangered Solenodon paradoxus from the island of Hispaniola

S. O’Brien, A. Roca, A. Antunes, 2017, bioRxiv.

Feline lymphomas: immunological and cytochemical characterization.

S. O’Brien, J. Abkowitz, J. Ihle, 1989, Cancer research.

Eighteen polymorphic microsatellite markers for the highly endangered Spanish imperial eagle ( Aquila adalberti ) and related species

S. O’Brien, W. Johnson, V. David, 2002 .

Biochemical Genetic Variation in Eight Endangered or Threatened Felid Species

S. O’Brien, D. Wildt, M. Bush, 1985 .

Genetic basis for species vulnerability in the cheetah.

S. O’Brien, C. Winkler, S. O'Brien, 1985, Science.

Conservation of human vs. feline genome organization revealed by reciprocal chromosome painting.

M A Ferguson-Smith, Fengtang Yang, S. O’Brien, 1997, Cytogenetics and cell genetics.

Development of a feline whole genome radiation hybrid panel and comparative mapping of human chromosome 12 and 22 loci.

S. O’Brien, W. Murphy, M. Menotti-Raymond, 1999, Genomics.

A radiation hybrid map of the cat genome: implications for comparative mapping.

S. O’Brien, W. Murphy, M. Menotti-Raymond, 2000, Genome research.

Reconstructing the genomic architecture of mammalian ancestors using multispecies comparative maps

Glenn Tesler, Guillaume Bourque, Pavel Pevzner, 2003, Human Genomics.

Anchored reference loci for comparative genome mapping in mammals

Nancy A. Jenkins, Neal G. Copeland, Stephen J. O'Brien, 1993, Nature Genetics.

Olfactory Receptor Subgenomes Linked with Broad Ecological Adaptations in Sauropsida.

Agostinho Antunes, Stephen J O'Brien, Emanuel Maldonado, 2015, Molecular biology and evolution.

Stromal cell-derived factor-1 genotype, coreceptor tropism, and HIV type 1 disease progression.

S. O’Brien, C. Winkler, E. Daar, 2005, The Journal of infectious diseases.

Rapid evolution of a heteroplasmic repetitive sequence in the mitochondrial DNA control region of carnivores

Jose V. Lopez, S. O’Brien, A. Hoelzel, 1994, Journal of Molecular Evolution.

Mutation in CEP290 discovered for cat model of human retinal degeneration.

A. Schäffer, S. O’Brien, R. Stephens, 2007, The Journal of heredity.

A variant of the gene encoding leukotriene A4 hydrolase confers ethnicity-specific risk of myocardial infarction

Vilmundur Gudnason, Kari Stefansson, Arshed A Quyyumi, 2006, Nature Genetics.

Whole Genome Sequencing-based Characterization of Human Genome Variation and Mutation Burden in Botswana

Prisca K. Thami, S. O’Brien, E. Chimusa, 2020, bioRxiv.

Positive Selection Linked with Generation of Novel Mammalian Dentition Patterns

S. O’Brien, A. Antunes, W. Johnson, 2016, Genome biology and evolution.

Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours

A. Clark, S. O’Brien, L. Trut, 2018, Nature Ecology & Evolution.

The Genome 10K Project: a way forward.

S. O’Brien, B. Paten, K. Koepfli, 2015, Annual review of animal biosciences.

Towards complete and error-free genome assemblies of all vertebrate species

Sergey Koren, Adam M. Phillippy, Eugene W. Myers, 2020, Nature.

The Late Miocene Radiation of Modern Felidae: A Genetic Assessment

Agostinho Antunes, Warren E. Johnson, Stephen J. O'Brien, 2006, Science.

The fishes of Genome 10K.

David Haussler, Giacomo Bernardi, Hicham Mansour, 2012, Marine genomics.

Tissue sampling methods and standards for vertebrate genomics

David Haussler, Robert W Murphy, Klaus-Peter Koepfli, 2012, GigaScience.

Expression of the human c-fms proto-oncogene in hematopoietic cells and its deletion in the 5q− syndrome

S. O’Brien, W. Nash, A. Nienhuis, 1985, Cell.

A glutaminase (gis) gene maps to mouse chromosome 1, rat chromosome 9, and human chromosome 2.

S. O’Brien, C. Kozak, H. Seuánez, 1989, Genomics.

Effects of human TRIM5alpha polymorphisms on antiretroviral function and susceptibility to human immunodeficiency virus infection.

S. O’Brien, J. Sodroski, R. Detels, 2006, Virology.

Adaptive evolution of the matrix extracellular phosphoglycoprotein in mammals

S. O’Brien, A. Antunes, W. Johnson, 2011, BMC Evolutionary Biology.

Mitochondrial Haplogroups Are Associated With Risk of Neuroretinal Disorder in HIV-Positive Patients

S. O’Brien, R. Lewis, D. Wallace, 2010, Journal of acquired immune deficiency syndromes.

Genome-Wide Analyses Reveal Gene Influence on HIV Disease Progression and HIV-1C Acquisition in Southern Africa.

S. O’Brien, T. Cai, D. Agniel, 2017, AIDS research and human retroviruses.

common underlying recombination pattern across four populations reflect their demographic history and a The linkage disequilibrium maps of three human chromosomes Material Supplemental

Hadar I. Isaac, Bjarni V. Halldórsson, B. Halldórsson, 2005 .

The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern.

Hadar I. Isaac, Bjarni V. Halldórsson, B. Halldórsson, 2005, Genome research.

Mapping of the gene encoding the alpha subunit of the stimulatory G protein of adenylyl cyclase (GNAS1) to 20q13.2----q13.3 in human by in situ hybridization.

S. O’Brien, W. Modi, M. Levine, 1991, Genomics.

Mapping of the domestic cat "SILVER" coat color locus identifies a unique genomic location for silver in mammals.

S. O’Brien, M. Menotti-Raymond, E. Eizirik, 2009, The Journal of heredity.

Genomic organization, sequence divergence, and recombination of feline immunodeficiency virus from lions in the wild

S. O’Brien, J. Pecon-Slattery, M. Roelke, 2008, BMC Genomics.

Case Study of a Population Bottleneck: Lions of the Ngorongoro Crater

C. Packer, S. O’Brien, A. Pusey, 1991 .

Evidence for African origins of founders of the asiatic lion species survival plan

Stephen J. O'Brien, S. O’Brien, J. Martenson, 1987 .

Applying molecular genetic tools to the conservation and action plan for the critically endangered Far Eastern leopard (Panthera pardus orientalis).

S. O’Brien, O. Uphyrkina, 2003, Comptes rendus biologies.

Genetic variation in Sri Lankan leopards

S. O’Brien, J. Seidensticker, L. Phillips, 1991 .

The extent and character of biochemical genetic variation in the domestic cat

S. O’Brien, 1980 .

Evidence for the horizontal acquisition of murine AKR virogenes by recent horizontal infection of the germ line

S. O’Brien, M. Martin, J. Womack, 1982, The Journal of experimental medicine.

Unique seminal quality in the South African cheetah and a comparative evaluation in the domestic cat.

S. O’Brien, A. V. van Dyk, D. Wildt, 1983, Biology of reproduction.

The Cheetah Is Depauperate in Genetic Variation

S. O’Brien, S. O'Brien, C. Merril, 1983, Science.

Biochemical Mutations in Drosophila melanogaster

S. O’Brien, 1975 .

The feline major histocompatibility complex is rearranged by an inversion with a breakpoint in the distal class I region

S. O’Brien, W. Nash, W. Murphy, 2004, Immunogenetics.

Genetic maps : a compilation of linkage and reconstruction maps of genetically studied organisms

S. O’Brien, 1980 .

Pangolin genomes and the evolution of mammalian scales and immunity

Guat Jah Wong, Tze King Tan, Aini Mohamed Yusoff, 2016, Genome research.

Genomic legacy of the African cheetah, Acinonyx jubatus

M. Diekhans, Jun Wang, S. O’Brien, 2015, Genome Biology.

Development of Y chromosome intraspecific polymorphic markers in the Felidae.

James L. D. Smith, S. O’Brien, M. Menotti-Raymond, 2007, The Journal of heredity.

Conserved regions of homologous G-banded chromosomes between orders in mammalian evolution: carnivores and primates.

S. O’Brien, W. Nash, 1982, Proceedings of the National Academy of Sciences of the United States of America.

Adaptive genomic evolution of opsins reveals that early mammals flourished in nocturnal environments

S. O’Brien, A. Antunes, W. Johnson, 2018, BMC Genomics.

Infectivity of lion and puma lentiviruses for domestic cats.

S. O’Brien, E. Hoover, S. Vandewoude, 1997, The Journal of general virology.

Restoring tigers to the Caspian region.

S. O’Brien, D. Macdonald, E. Dinerstein, 2011, Science.

ANALYSIS OF FLUCTUATING ASYMMETRY IN CHEETAHS

S. O’Brien, R. Wayne, S. O'Brien, 1987, Evolution; international journal of organic evolution.

Chromosomal localization of the human interleukin 1α (IL-1α) gene☆

S. O’Brien, M. Yamada, K. Matsushima, 1988 .

Analytical “bake-off” of whole genome sequencing quality for the Genome Russia project using a small cohort for autoimmune hepatitis

S. O’Brien, D. Valle, Minzhong Tang, 2018, PloS one.

Comparative feline genomics: a BAC/PAC contig map of the major histocompatibility complex class II region.

S. O’Brien, P. D. de Jong, R. Stephens, 2001, Genomics.

Contamination of Hodgkin's disease cell cultures

Stephen J. O'Brien, S. O’Brien, N. Harris, 1981, Nature.

Polygenic and multifactorial disease gene association in man: Lessons from AIDS.

S. O’Brien, C. Winkler, G. Nelson, 2000, Annual review of genetics.

Molecular analysis of integrated human papillomavirus 16 sequences in the cervical cancer cell line SiHa.

S. O’Brien, R. Burk, J. Kaplan, 1987, Virology.

A Domestic cat X Chromosome Linkage Map and the Sex-Linked orange Locus: Mapping of orange, Multiple Origins and Epistasis Over nonagouti

A. Schäffer, S. O’Brien, M. Menotti-Raymond, 2009, Genetics.

Captive breeding of the cheetah (Acinonyx jubatus) in North American zoos (1871–1986)

S. O’Brien, L. Marker, 2005, Zoo Biology.

Emerging Viruses in the Felidae: Shifting Paradigms

S. O’Brien, A. Antunes, J. Pecon-Slattery, 2012, Viruses.

Transactivation induced by human T-lymphotropic virus type III (HTLV III) maps to a viral sequence encoding 58 amino acids and lacks tissue specificity.

S. O’Brien, M. Feinberg, G. Reyes, 1986, Virology.

Genetic individualization of domestic cats using feline STR loci for forensic applications.

J. Stephens, S. O’Brien, M. Menotti-Raymond, 1997, Journal of forensic sciences.

Segmental aneuploidy as a probe for structural genes in Drosophila: mitochondrial membrane enzymes.

S. O’Brien, R. C. Gethmann, 1973, Genetics.

FIV cross-species transmission: An evolutionary prospective

S. O’Brien, A. Antunes, J. Pecon-Slattery, 2008, Veterinary Immunology and Immunopathology.

T-LYMPHOCYTE PROFILES IN FIV-INFECTED WILD LIONS AND PUMAS REVEAL CD4 DEPLETION

C. Packer, S. O’Brien, J. Pecon-Slattery, 2006, Journal of wildlife diseases.

Growth of lion and puma lentiviruses in domestic cat cells and comparisons with FIV.

S. O’Brien, E. Hoover, W. Hardy, 1997, Virology.

The Vertebrate TLR Supergene Family Evolved Dynamically by Gene Gain/Loss and Positive Selection Revealing a Host–Pathogen Arms Race in Birds

S. O’Brien, E. Jarvis, A. Antunes, 2019, Diversity.

Avian Binocularity and Adaptation to Nocturnal Environments: Genomic Insights from a Highly Derived Visual Phenotype

S. O’Brien, E. Jarvis, A. Antunes, 2019, Genome biology and evolution.

The first whole genome and transcriptome of the cinereous vulture reveals adaptation in the gastric and immune defense systems and possible convergent evolution between the Old and New World vultures

Yun Sung Cho, Jessica A. Weber, S. O’Brien, 2015, Genome Biology.

Genome-wide signatures of complex introgression and adaptive evolution in the big cats

Graham M. Hughes, R. Nielsen, S. O’Brien, 2017, Science Advances.

Marker of proliferation Ki-67 expression is associated with transforming growth factor beta 1 and can predict the prognosis of patients with hepatic B virus-related hepatocellular carcinoma

S. O’Brien, C. Winkler, T. Peng, 2018, Cancer management and research.

Cloning and chromosome mapping of the feline genes p21WAF1 and p27Kip1.

S. O’Brien, A. Hasegawa, M. Okuda, 1997, Gene.

A molecular phylogeny of the hominoid primates as indicated by two-dimensional protein electrophoresis.

S. O’Brien, P. R. Giri, D. Goldman, 1987, Proceedings of the National Academy of Sciences of the United States of America.

Whole Genome Rare-Variant Association Study of HIV-1 Progression in a Southern African Population

Prisca K. Thami, S. O’Brien, E. Chimusa, 2020, medRxiv.

The Role of Gene Duplication and Unconstrained Selective Pressures in the Melanopsin Gene Family Evolution and Vertebrate Circadian Rhythm Regulation

S. O’Brien, A. Antunes, W. Johnson, 2012, PloS one.

Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression

S. O’Brien, Jianguo Zhang, Tao Zhang, 2021, BMC medical genomics.

A Beautiful Life: High Risk-High Payoff in Genetic Science.

S. O’Brien, 2019, Annual review of animal biosciences.

Dispersion of the ras family of transforming genes to four different chromosomes in man

S. O’Brien, W. Nash, D. Lowy, 1983, Nature.

Endogenous Retrovirus Insertion in the KIT Oncogene Determines White and White spotting in Domestic Cats

A. Schäffer, S. O’Brien, M. Menotti-Raymond, 2014, G3: Genes, Genomes, Genetics.

BEK, a receptor for multiple members of the fibroblast growth factor (FGF) family, maps to human chromosome 10q25.3----q26.

S. O’Brien, M. Jaye, J. Schlessinger, 1992, Cytogenetics and cell genetics.

Feline immunodeficiency virus (FIV) in wild Pallas' cats.

S. O’Brien, R. Sellers, M. Roelke, 2010, Veterinary immunology and immunopathology.

Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks

S. O’Brien, Qiye Li, W. Warren, 2019, Genome research.

Annotated features of domestic cat – Felis catus genome

C. Alkan, S. O’Brien, T. Marquès-Bonet, 2014, GigaScience.

Genetic Polymorphisms of CYP2E1, GSTP1, NQO1 and MPO and the Risk of Nasopharyngeal Carcinoma in a Han Chinese Population of Southern China

S. O’Brien, B. Kessing, Xiuchan Guo, 2010, BMC Research Notes.

Characteristics of HeLa strains: permanent vs. variable features.

S. O’Brien, G. Darlington, W. Nelson-Rees, 1980, Cytogenetics and cell genetics.

Role of Exonic Variation in Chemokine Receptor Genes on AIDS: CCRL2 F167Y Association with Pneumocystis Pneumonia

J. Goedert, J. Phair, S. O’Brien, 2011, PLoS genetics.

Genetic mapping of the beta 1 GABA receptor gene to human chromosome 4, using a tetranucleotide repeat polymorphism.

E. Kirkness, S. O’Brien, C. Fraser, 1991, American journal of human genetics.

Chromosomal organization of the human dihydrofolate reductase genes: dispersion, selective amplification, and a novel form of polymorphism.

S. O’Brien, W. Nash, A. Nienhuis, 1984, Proceedings of the National Academy of Sciences of the United States of America.

GWATCH: a web platform for automated gene association discovery analysis

S. O’Brien, M. V. Van Natta, D. Jabs, 2014, GigaScience.

Detecting high-resolution polymorphisms in human coding loci by combining PCR and single-strand conformation polymorphism (SSCP) analysis.

S. O’Brien, M. Dean, S. Poduslo, 1991, American journal of human genetics.

Elevated male European and female African contributions to the genomes of African American individuals

Scott M. Williams, Douglas C. Wallace, Eduardo Ruiz-Pesini, 2006, Human Genetics.

Isolation of HTLV-transformed B-lymphocyte clone from a patient with HTLV-associated adult T-cell leukaemia

S. O’Brien, D. Longo, E. Gelmann, 1984, Nature.

DNA-DNA Hybridization Studies and Marsupial Phylogeny

S. O’Brien, M. Westerman, D. Janczewski, 1989 .

Draft genome of Bugula neritina, a colonial animal packing powerful symbionts and potential medicines

Jose V. Lopez, Adelaide C. Rhodes, S. O’Brien, 2020, Scientific Data.

Whole Genome Sequencing and Re-sequencing of the Sable Antelope (Hippotragus niger): A Resource for Monitoring Diversity in ex Situ and in Situ Populations

S. O’Brien, L. Chemnick, O. Ryder, 2019, G3: Genes, Genomes, Genetics.

An ~140-kb deletion associated with feline spinal muscular atrophy implies an essential LIX1 function for motor neuron survival

R. Agarwala, A. Schäffer, S. O’Brien, 2006 .

An approximately 140-kb deletion associated with feline spinal muscular atrophy implies an essential LIX1 function for motor neuron survival.

R. Agarwala, A. Schäffer, S. O’Brien, 2006, Genome research.

The pattern of phylogenomic evolution of the Canidae

S. O’Brien, W. Nash, J. Wienberg, 2002, Cytogenetic and Genome Research.

Genomic Variations in Drug Resistant Mycobacterium tuberculosis Strains Collected from Patients with Different Localization of Infection

S. O’Brien, A. Lapidus, N. Solovieva, 2020, Antibiotics.

Genome-wide analysis of drug resistant Mycobacterium tuberculosis isolates causing pulmonary and extrapulmonary tuberculosis in Russia

S. O’Brien, A. Lapidus, N. Solovieva, 2018, bioRxiv.

Whole-Genome Analysis of Mycobacterium tuberculosis from Patients with Tuberculous Spondylitis, Russia

S. O’Brien, A. Yurchenko, N. Solovieva, 2018, Emerging infectious diseases.

Twenty-seven protein polymorphisms by two-dimensional electrophoresis of serum, erythrocytes, and fibroblasts in two pedigrees.

S. O’Brien, C. Merril, L. Goldin, 1985, American journal of human genetics.

How the Leopard Hides Its Spots: ASIP Mutations and Melanism in Wild Cats

G. Barsh, S. O’Brien, M. Menotti-Raymond, 2012, PloS one.

Genomic prospecting

S. O’Brien, 1995, Nature Medicine.

Reproductive and genetic consequences of founding isolated lion populations

C. Packer, S. O’Brien, A. Pusey, 1987, Nature.

Association of DC-SIGN Promoter Polymorphism with Increased Risk for Parenteral, but Not Mucosal, Acquisition of Human Immunodeficiency Virus Type 1 Infection

J. Goedert, M. Carrington, M. Lederman, 2004, Journal of Virology.

Influence of CCR5 promoter haplotypes on AIDS progression in African–Americans

S. O’Brien, D. Vlahov, C. Winkler, 2000, AIDS.

Genetic Analysis of Hybrid Cells Using Isozyme Markers as Monitors of Chromosome Segregation

S. O’Brien, M. Eichelberger, J. Simonson, 1982 .

A new genetic locus, bevi, on human chromosome 6 which controls the replication of baboon type C virus in human cells

S. O’Brien, C. Sherr, R. Lemons, 1977, Cell.

A gene (Bevi) on human chromosome 6 is an integration site for baboon type C DNA provirus in human cells

S. O’Brien, W. Nash, C. Sherr, 1978, Cell.

Dynamic and nonspecific dispersal of human T-cell leukemia/lymphoma virus type-I integration in cultured lymphoma cells.

S. O’Brien, W. Nash, B. Poiesz, 1986, Virology.

Bvr-1, a restriction locus of a type C RNA virus in the feline cellular genome: pleiotropic restriction of endogenous BALB virus in cat X mouse somatic cell hybrids

S. O’Brien, J. Simonson, 1978, The Journal of experimental medicine.

Deposition of retrovirus associated antigens (p30 and gp70) on cell membranes of feline and murine leukaemia virus infected cells.

S. O’Brien, J. Simonson, S. Davis, 1978, The Journal of general virology.

Expression of virus structural proteins on murine cell surfaces in association with the production of murine leukaemia virus.

S. O’Brien, C. Boone, J. Simonson, 1976, The Journal of general virology.

The evolution of cats. Genomic paw prints in the DNA of the world's wild cats have clarified the cat family tree and uncovered several remarkable migrations in their past.

S. O’Brien, W. Johnson, 2007, Scientific American.

The Evolution of CATS

S. O’Brien, W. Johnson, 2007 .

Characterization of MHC cDNA clones in the domestic cat. Diversity and evolution of class I genes.

S. O’Brien, N. Yuhki, G. Heidecker, 1989, Journal of immunology.

Mapping of 53 loci in American mink (Mustela vison).

S. O’Brien, W. Murphy, N. Matveeva, 2003, The Journal of heredity.

Phylogenomics: Ancestral primate viewed

S. O’Brien, R. Stanyon, 1999, Nature.

Chromosomal evolution of the Canidae. I. Species with high diploid numbers.

S. O’Brien, W. Nash, R. Wayne, 1987, Cytogenetics and cell genetics.

CXCR4 polymorphisms and HIV-1 pathogenesis.

M. Carrington, S. O’Brien, H. Sheppard, 1998, Journal of acquired immune deficiency syndromes and human retrovirology : official publication of the International Retrovirology Association.

Population characteristics of DNA fingerprints in humpback whales (Megaptera novaeangliae).

S. O’Brien, J. Calambokidis, G. Chambers, 1993, The Journal of heredity.

The human homologs of the raf (mil) oncogene are located on human chromosomes 3 and 4.

S. O’Brien, P. Leder, W. Nash, 1984, Science.

Genome-Wide and Differential Proteomic Analysis of Hepatitis B Virus and Aflatoxin B1 Related Hepatocellular Carcinoma in Guangxi, China

S. O’Brien, C. Winkler, Zhi-ming Liu, 2013, PloS one.

Correction: A canine distemper virus epidemic in Serengeti lions (Panthera leo) (Nature (1996) 379 (441-445))

C. Packer, S. O’Brien, S. Cleaveland, 1996 .

Cloning, characterization, expression, and chromosomal localization of a human ferritin heavy-chain gene.

M. Hentze, S. O’Brien, R. Klausner, 1986, Proceedings of the National Academy of Sciences of the United States of America.

The Lake Casitas wild mouse: evolving genetic resistance to retroviral disease.

S. O’Brien, C. Kozak, M. Gardner, 1991, Trends in genetics : TIG.

Phenotypic Expressions of CCR5-Δ32/Δ32 Homozygosity

J. Goedert, M. Carrington, S. O’Brien, 1999 .

The Pioneer Advantage: Filling the blank spots on the map of genome diversity in Europe

S. O’Brien, S. Mangul, Taras K. Oleksyk, 2022, GigaScience.

Genetic characterization of FLA, the cat major histocompatibility complex.

S. O’Brien, C. Winkler, S. Cevario, 1989, Proceedings of the National Academy of Sciences of the United States of America.

Expression of feline leukaemia virus antigens on cat lymphoma cells: kinetics of biosynthesis.

S. O’Brien, C. Boone, 1977, The Journal of general virology.

A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control

David Heckerman, Jacques Fellay, Christoph Lippert, 2013, eLife.

Organization and chromosomal specificity of autosomal homologs of human Y chromosome repeated DNA

S. O’Brien, W. Nash, R. Burk, 2004, Chromosoma.

Molecular characterization and genetic mapping of class I and class II MHC genes of the domestic cat

S. O’Brien, N. Yuhki, 2004, Immunogenetics.

Papillomavirus-Associated Focal Oral Hyperplasia in Wild and Captive Asian Lions (Panthera leo persica)

S. O’Brien, J. Sundberg, R. Burk, 1996 .

A genetic linkage map of microsatellites in the domestic cat (Felis catus).

A A Schäffer, A. Schäffer, S. O’Brien, 1999, Genomics.

The MeowPlex: A New DNA Test Using Tetranucleotide STR Markers for the Domestic Cat

S. O’Brien, J. Butler, M. Menotti-Raymond, 2002 .

Chromosomal mapping of lysosomal enzyme structural genes in the domestic cat.

S. O’Brien, D. Gilbert, J. O'brien, 1988, Genomics.

Atlas of mammalian chromosomes

S. O’Brien, W. Nash, J. Menninger, 2006 .

Reproductive status of endemic felid species in Latin American zoos and implications for ex situ conservation

S. O’Brien, W. Johnson, R. N. Morais, 2003 .

Sequence and chromosomal location of the I-309 gene. Relationship to genes encoding a family of inflammatory cytokines.

S. O’Brien, H. Seuánez, M. Dorf, 1990, Journal of immunology.

Molecular Analysis of the Human Serum Amyloid A (SAA) Gene Family

S. O’Brien, H. Seuánez, C. Talbot, 1989, Scandinavian journal of immunology.

The human myelin-basic-protein gene: chromosomal localization and RFLP analysis.

S. O’Brien, R. Spielman, W. Modi, 1987, American journal of human genetics.

Genetic restriction of AIDS pathogenesis by an SDF-1 chemokine gene variant. ALIVE Study, Hemophilia Growth and Development Study (HGDS), Multicenter AIDS Cohort Study (MACS), Multicenter Hemophilia Cohort Study (MHCS), San Francisco City Cohort (SFCC)

J J Goedert, E Gomperts, J. Goedert, 1998, Science.

The Effect of RANTES Chemokine Genetic Variants on Early HIV-1 Plasma RNA Among African American Injection Drug Users

T. Beaty, S. O’Brien, D. Vlahov, 2005, Journal of acquired immune deficiency syndromes.

Validation of Genetic Case‐Control Studies in AIDS and Application to the CX3CR1 Polymorphism

S. O’Brien, C. Winkler, P. An, 2001, Journal of acquired immune deficiency syndromes.

Influence of the CCR 2V 64 I Polymorphism on Human Immunodeficiency Virus Type 1 Coreceptor Activity and on Chemokine Receptor Function of CCR 2 b , CCR 3 , CCR 5 , and CXCR 4

S. O’Brien, R. Doms, M. Mellado, 1998 .

CCR5-Δ32 gene deletion in HIV-1 infected patients

M. Carrington, S. O’Brien, G. Huttley, 1997, The Lancet.

Participants in HIV Study: Correction

J. Goedert, M. Carrington, S. O’Brien, 1996, Science.

Participants in HIV Study: Correction.

J. Goedert, M. Carrington, S. O’Brien, 1996, Science.

Gene for T-cell growth factor: location on human chromosome 4q and feline chromosome B1.

S. O’Brien, W. Nash, R. Gallo, 1984, Science.

Genetic characterization of human c-rel sequences

S. O’Brien, W. Nash, N. Rice, 1985, Molecular and cellular biology.

Class II HLA alleles and hepatitis B virus persistence in African Americans.

M. Carrington, S. O’Brien, D. Vlahov, 1999, The Journal of infectious diseases.

Carcinoembryonic antigen promotes colorectal cancer progression by targeting adherens junction complexes.

S. O’Brien, E. Tolkunova, Nina V. Chaika, 2014, Experimental cell research.

White shark genome reveals ancient elasmobranch adaptations associated with wound healing and the maintenance of genome stability

S. O’Brien, M. Stanhope, A. Antunes, 2019, Proceedings of the National Academy of Sciences.

Validation of a short tandem repeat multiplex typing system for genetic individualization of domestic cat samples.

S. O’Brien, M. Menotti-Raymond, V. David, 2007, Croatian medical journal.

The Genome 10K Project: A Way Forward Further

D. Haussler, R. Durbin, M. Diekhans, 2015 .

Monocyte-derived neutrophil chemotactic factor (MDNCF/IL-8) resides in a gene cluster along with several other members of the platelet factor 4 gene superfamily

S. O’Brien, H. Seuánez, K. Matsushima, 2004, Human Genetics.

Molecular cloning and chromosomal localization of the human T-cell receptor zeta chain: distinction from the molecular CD3 complex.

S. O’Brien, R. Klausner, D. Orloff, 1988, Proceedings of the National Academy of Sciences of the United States of America.

A comparative chromosome banding analysis of the Ursidae and their relationship to other carnivores.

S. O’Brien, W. Nash, 1987, Cytogenetics and cell genetics.

MULTIPLE PATERNITY AND REPRODUCTIVE TACTICS OF FREE-RANGING AMERICAN MINKS, MUSTELA VISON

S. O’Brien, D. Macdonald, W. Johnson, 2004 .

Genetic variation within and among lion tamarins.

S. O’Brien, D. Kleiman, J. Ballou, 1986, American journal of physical anthropology.

THE α-GLYCEROPHOSPHATE CYCLE IN DROSOPHILA MELANOGASTER

S. O’Brien, Y. Shimada, 1974, The Journal of Cell Biology.

Cloning and comparative mapping of a human class III (chi) alcohol dehydrogenase cDNA.

S. O’Brien, H. Seuánez, P. R. Giri, 1989, Biochemical and biophysical research communications.

Putting Russia on the genome map.

S. O’Brien, V. Brukhin, Taras K. Oleksyk, 2015, Science.

Chromosomal localization of the met proto-oncogene in the mouse and cat genome.

S. O’Brien, G. V. Vande Woude, C. Kozak, 1987, Genomics.

Genetic mapping of endogenous RD-114 retroviral sequences of domestic cats

S. O’Brien, W. Nash, R. Reeves, 1985, Journal of virology.

Origin of the HIV-susceptible human CD4+ cell line H9.

S. O’Brien, A. Gazdar, D. Mann, 1989, AIDS research and human retroviruses.

Racial differences in HLA class II associations with hepatitis C virus outcomes.

J. Goedert, M. Carrington, S. O’Brien, 2001, The Journal of infectious diseases.

Isolation of a cDNA clone for the human laminin-B1 chain and its gene localization.

S. O’Brien, M. Jaye, W. Modi, 1987, American journal of human genetics.

Innate partnership of HLA-B and KIR3DL1 subtypes against HIV-1

Amalio Telenti, Peter Parham, Stephen J O'Brien, 2007, Nature Genetics.

Prevalence of Bartonella infection in wild African lions (Panthera leo) and cheetahs (Acinonyx jubatus).

S. O’Brien, S. O'Brien, B. Chomel, 2004, Veterinary microbiology.

Emergence of the keratinocyte growth factor multigene family during the great ape radiation.

S. O’Brien, J. Rubin, M. Kelley, 1992, Proceedings of the National Academy of Sciences of the United States of America.

A mutation in KIR3DS1 that results in truncation and lack of cell surface expression

M. Carrington, J. Phair, S. O’Brien, 2007, Immunogenetics.

Response to Comment by Faurby, Werdelin and Svenning

S. O’Brien, A. Antunes, W. Johnson, 2016, Genome Biology.

Phylogeny and evolution of cats (Felidae)

S. O’Brien, W. Johnson, N. Yamaguchi, 2010 .

Molecular cloning and chromosomal mapping of feline p53 tumor suppressor gene.

S. O’Brien, A. Hasegawa, M. Okuda, 1993, The Journal of veterinary medical science.

The tiger genome and comparative analysis with lion and snow leopard genomes

Yun Sung Cho, Jun Wang, S. O’Brien, 2013, Nature Communications.

Genetic and morphological divergence among sympatric canids.

S. O’Brien, R. Wayne, T. Fuller, 1989, The Journal of heredity.

The virulence of E. coli 0157:H7 isolated from Irish sheep and pigs to humans

S. O’Brien, J. Sheridan, M. Lenahan, 2008 .

Aldehyde dehydrogenase 1 (ALDH1) isoform expression and potential clinical implications in hepatocellular carcinoma

S. O’Brien, Zhen Liu, Zhengtao Liu, 2017, PloS one.

Perspective on conservation genetics

S. O’Brien, 1994 .

Assignment of Islet Amyloid Polypeptide (IAPP) Gene to Feline Chromosome B4 Using the Polymerase Chain Reaction Technique on Feline-Rodent Hybrid Cell Lines

S. O’Brien, K. Johnson, T. O’Brien, 1995, Veterinary pathology.

Exposure to disease agents in the endangered Iberian lynx (Lynx pardinus)

S. O’Brien, E. Revilla, F. Palomares, 2007, European Journal of Wildlife Research.

Chromosome assignment by polymerase chain reaction techniques: assignment of the oncogene FGF-5 to human chromosome 4.

S. O’Brien, M. Jaye, H. Seuánez, 1990, BioTechniques.

Public stem cell banks: considerations of justice in stem cell research and therapy.

Aravinda Chakravarti, Stephen J O'Brien, S. O’Brien, 2003, The Hastings Center report.

Comparative analysis of malate dehydrogenases of Drosophila melanogaster

S. O’Brien, 1973, Biochemical Genetics.

The α-glycerophosphate cycle inDrosophila melanogaster. I. Biochemical and developmental aspects

S. O’Brien, R. MacIntyre, R. Macintyre, 1972, Biochemical Genetics.

The human chromogranin A gene: chromosome assignment and RFLP analysis.

S. O’Brien, H. Seuánez, W. Modi, 1989, American journal of human genetics.

The interleukin 3 gene is located on human chromosome 5 and is deleted in myeloid leukemias with a deletion of 5q.

S. O’Brien, J. Rowley, M. L. Le Beau, 1987, Proceedings of the National Academy of Sciences of the United States of America.

Preoperative transcatheter arterial chemotherapy may suppress oxidative stress in hepatocellular carcinoma cells and reduce the risk of short-term relapse.

S. O’Brien, C. Winkler, Yi-Zhen Gong, 2017, Oncotarget.

Amplification and chromosomal dispersion of human endogenous retroviral sequences

S. O’Brien, M. Martin, A. Rabson, 1986, Journal of virology.

The human erg gene maps to chromosome 21, band q22: relationship to the 8; 21 translocation of acute myelogenous leukemia.

S. O’Brien, D. Patterson, W. Modi, 1988, Oncogene.

Linkage map of the tomato (Lycopersicon esculentum).

S. O’Brien, C. Rick, 1984 .

Molecular genetic divergence of orang utan (Pongo pygmaeus) subspecies based on isozyme and two-dimensional gel electrophoresis.

S. O’Brien, D. Goldman, D. Janczewski, 1990, The Journal of heredity.

Comparative anchor tagged sequences (CATS) for integrative mapping of mammalian genomes

T. F. Laughlin, S. O’Brien, N. Copeland, 1997, Nature Genetics.

A nuclear DNA phylogeny of the woolly mammoth (Mammuthus primigenius).

S. O’Brien, N. Georgiadis, C. Capelli, 2006, Molecular phylogenetics and evolution.

Chromosomal localization and racial distribution of the polymorphic human dihydrofolate reductase pseudogene (DHFRP1).

S. O’Brien, S. Antonarakis, A. Nienhuis, 1988, American journal of human genetics.

Hormonal characteristics of free-ranging female lions (Panthera leo) of the Serengeti Plains and Ngorongoro Crater.

C. Packer, S. O’Brien, A. Pusey, 1993, Journal of reproduction and fertility.

Large sequence divergence among mitochondrial DNA genotypes within populations of eastern African black-backed jackals.

A. Meyer, S. O’Brien, N. Lehman, 1990, Proceedings of the National Academy of Sciences of the United States of America.

Empirical demonstration that structural gene and morphometric variation of mandible traits are uncoupled between mouse strains

S. O’Brien, R. Wayne, 1986 .

Influence of combinations of human major histocompatibility complex genes on the course of HIV–1 infection

J. Goedert, W. Blattner, M. Carrington, 1996, Nature Medicine.

Linkage mapping of the human CSF2 and IL3 genes.

S. O’Brien, I. Mazo, E. Frolova, 1991, Proceedings of the National Academy of Sciences of the United States of America.

Genetic Evidence for Contrasting Wetland and Savannah Habitat Specializations in Different Populations of Lions (Panthera leo).

S. O’Brien, A. Antunes, A. Moore, 2016, The Journal of heredity.

Hepatitis C virus load is associated with human immunodeficiency virus type 1 disease progression in hemophiliacs.

S. O’Brien, C. Winkler, E. Daar, 2001, The Journal of infectious diseases.

Phylogenetic reconstruction of the felidae using 16S rRNA and NADH-5 mitochondrial genes

S. O’Brien, W. Johnson, 2009, Journal of Molecular Evolution.

A canine distemper virus epidemic in Serengeti lions (Panthera leo)

C. Packer, S. O’Brien, S. Cleaveland, 1996, Nature.

A canine distemper virus epidemic in Serengeti lions (Panthera leo)

C. Packer, S. O’Brien, S. Cleaveland, 1996, Nature.

Ecological and biogeographical inferences on two sympatric and enigmatic Andean cat species using genetic identification of faecal samples

S. O’Brien, P. Marquet, W. Johnson, 2008, Molecular ecology.

Molecular phylogenetic inference from saber-toothed cat fossils of Rancho La Brea.

S. O’Brien, N. Yuhki, S. O'Brien, 1992, Proceedings of the National Academy of Sciences of the United States of America.

Genome-wide Evidence Reveals that African and Eurasian Golden Jackals Are Distinct Species

S. O’Brien, R. Wayne, O. Thalmann, 2015, Current Biology.

Mitogenomic sequences support a north–south subspecies subdivision within Solenodon paradoxus

S. O’Brien, W. Murphy, A. Roca, 2017, Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis.

Mesozoic origin for West Indian insectivores

Kristofer M. Helgen, Gila Kahila Bar-Gal, Mark S. Springer, 2004, Nature.

Sequencing and Annotating New Mammalian Y Chromosomes A White Paper Proposal , July , 2006

R. Wilson, G. Weinstock, R. Gibbs, 2006 .

From wild animals to domestic pets, an evolutionary view of domestication

Stephen J O'Brien, S. O’Brien, D. Macdonald, 2009, Proceedings of the National Academy of Sciences.

Molecular Genetics and Evolution of Melanism in the Cat Family

S. O’Brien, M. Menotti-Raymond, N. Yuhki, 2003, Current Biology.

A molecular approach to the identification and individualization of human and animal cells in culture: Isozyme and allozyme genetic signatures

J. E. Shannon, S. O’Brien, M. Gail, 1980, In Vitro.

Genetic diversity in leukemia-prone feral house mice infected with murine leukemia virus

S. O’Brien, M. Rice, M. Gardner, 1980, Biochemical Genetics.

Genetic and phylogenetic analyses of endangered species.

S. O’Brien, 1994, Annual review of genetics.

Genetic Monitors of Zoo Populations: Morphological and Electrophoretic Assays

S. O’Brien, R. Wayne, A. Newman, 1986 .

Subspecies Genetic Assignments of Worldwide Captive Tigers Increase Conservation Value of Captive Populations

James L. D. Smith, S. O’Brien, A. Antunes, 2008, Current Biology.

Semen characteristics in free-living koalas (Phascolarctos cinereus).

S. O’Brien, D. Wildt, M. Bush, 1991, Journal of reproduction and fertility.

Pet cat hair implicates murder suspect

S. O’Brien, M. Menotti-Raymond, V. David, 1997, Nature.

Bureaucratic mischief: recognizing endangered species and subspecies.

S. O’Brien, E. Mayr, 1991, Science.

Phylogenetic and phylogeographic analysis of Iberian lynx populations.

S. O’Brien, E. Revilla, F. Palomares, 2004, The Journal of heredity.

Genetic Restoration of the Florida Panther

S. O’Brien, W. Johnson, M. Roelke, 2010, Science.

Functions, structure, and read-through alternative splicing of feline APOBEC3 genes

S. O’Brien, N. Yuhki, A. Hotz-Wagenblatt, 2008, Genome Biology.

Seroprevalence and Genomic Divergence of Circulating Strains of Feline Immunodeficiency Virus among Felidae and Hyaenidae Species

S. O’Brien, E. Revilla, J. Pecon-Slattery, 2005, Journal of Virology.

A lion lentivirus related to feline immunodeficiency virus: epidemiologic and phylogenetic aspects

C. Packer, S. O’Brien, N. Yuhki, 1994, Journal of virology.

Influence of temperature and gas atmosphere on in-vitro fertilization and embryo development in domestic cats.

S. O’Brien, D. Wildt, A. Donoghue, 1991, Journal of reproduction and fertility.

Culture medium and protein supplementation influence in vitro fertilization and embryo development in the domestic cat.

S. O’Brien, D. Wildt, A. Donoghue, 1991, The Journal of experimental zoology.

Developmental competence of domestic cat follicular oocytes after fertilization in vitro.

S. O’Brien, R. Wall, D. Wildt, 1988, Biology of reproduction.

Interacting gene-enzyme systems in Drosophila.

S. O’Brien, R. MacIntyre, R. Macintyre, 1976, Annual review of genetics.

Transient Linkage Disequilibrium in Drosophila

S. O’Brien, R. MacIntyre, R. Macintyre, 1971, Nature.

An Analysis of Gene-Enzyme Variability in Natural Populations of Drosophila melanogaster and D. simulans

S. O’Brien, R. MacIntyre, R. Macintyre, 1969, The American Naturalist.

A Molecular Phylogeny for Bats Illuminates Biogeography and the Fossil Record

S. O’Brien, W. Murphy, E. Teeling, 2005, Science.

The tax gene sequences form two divergent monophyletic lineages corresponding to types I and II of simian and human T-cell leukemia/lymphotropic viruses.

W. Heneine, S. O’Brien, R. Desrosiers, 1997, Virology.

The human homolog of the Moloney leukemia virus integration 2 locus (MLV12) maps to band p14 of chromosome 5.

S. O’Brien, A. Nienhuis, W. Modi, 1989, Genomics.

Genetics and Pathogenesis of Feline Infectious Peritonitis Virus

S. O’Brien, J. Pecon-Slattery, M. Roelke, 2009, Emerging infectious diseases.

Gene loss, adaptive evolution and the co-evolution of plumage coloration genes with opsins in birds

S. O’Brien, E. Jarvis, A. Antunes, 2015, BMC Genomics.

Genome-wide association study implicates PARD3B-based AIDS restriction.

Jean-François Zagury, Olivier Delaneau, Sophie Limou, 2011, The Journal of infectious diseases.

Prevalence of antibodies to feline parvovirus, calicivirus, herpesvirus, coronavirus, and immunodeficiency virus and of feline leukemia virus antigen and the interrelationship of these viral infections in free-ranging lions in east Africa

C. Packer, S. O’Brien, M. Grob, 1996, Clinical and diagnostic laboratory immunology.

Phenotypic expressions of CCR5-delta32/delta32 homozygosity.

J. Goedert, M. Carrington, S. O’Brien, 1999, Journal of acquired immune deficiency syndromes.

Genetic acceleration of AIDS progression by a promoter variant of CCR5.

J. Goedert, M. Carrington, J. Margolick, 1998, Science.

Dating the origin of the CCR5-Delta32 AIDS-resistance allele by the coalescence of haplotypes.

H. Ostrer, D. Goldstein, X. Estivill, 1998, American journal of human genetics.

Feline immunodeficiency virus integration in B-cell lymphoma identifies a candidate tumor suppressor gene on human chromosome 15q15.

S. O’Brien, E. Cameron, J. Neil, 2002, Cancer research.

search paper line immunodeficiency virus ( FIV ) in wild Pallas ’ cats

S. O’Brien, R. Sellers, M. Roelke, 2009 .

Dating the Origin of the CCR 5D 32 AIDS-Resistance Allele by the Coalescence of Haplotypes

H. Ostrer, D. Goldstein, X. Estivill, 2007 .

Genetics of HIV-1 infection: chemokine receptor CCR5 polymorphism and its consequences.

M. Carrington, S. O’Brien, M. Dean, 1999, Human molecular genetics.

Novel alleles of the chemokine-receptor gene CCR5.

M. Carrington, S. O’Brien, M. Dean, 1997, American journal of human genetics.

Modulating influence on HIV/AIDS by interacting RANTES gene variants

J. Goedert, J. Phair, S. O’Brien, 2002, Proceedings of the National Academy of Sciences of the United States of America.

A population-based study to investigate host genetic factors associated with hepatitis B infection and pathogenesis in the Chinese population

Zheng Zeng, Shan Sun, Stephen J O'Brien, 2008, BMC infectious diseases.

MCP-1-MCP-3–Eotaxin gene cluster influences HIV-1 transmission

J. Goedert, S. O’Brien, R. Detels, 2003, AIDS.

Pathological manifestations of feline immunodeficiency virus (FIV) infection in wild African lions

S. O’Brien, A. Roca, J. Pecon-Slattery, 2009, Virology.

New high copy tandem repeat in the content of the chicken W chromosome

S. O’Brien, S. Galkina, E. Gaginskaya, 2018, Chromosoma.

Effect of host genetics on the development of cytomegalovirus retinitis in patients with AIDS.

S. O’Brien, R. Lewis, M. V. Van Natta, 2010, The Journal of infectious diseases.

Human endothelial cell growth factor: cloning, nucleotide sequence, and chromosome localization.

S. O’Brien, M. Jaye, W. Modi, 1986, Science.

Evidence of natural bluetongue virus infection among African carnivores.

K. Holekamp, S. O’Brien, L. Smale, 1994, The American journal of tropical medicine and hygiene.

Akvr-1, a dominant murine leukemia virus restriction gene, is polymorphic in leukemia-prone wild mice.

B. K. Pal, S. O’Brien, M. Gardner, 1980, Proceedings of the National Academy of Sciences of the United States of America.

A Mutation in LTBP2 Causes Congenital Glaucoma in Domestic Cats (Felis catus)

S Scott Whitmore, Todd E Scheetz, Zhongyuan Zhao, 2016, PloS one.

Widespread retinal degenerative disease mutation (rdAc) discovered among a large number of popular cat breeds.

S. O’Brien, K. Narfström, M. Menotti-Raymond, 2010, Veterinary journal.

Continued decline in genetic diversity among wild cheetahs (Acinonyx jubatus) without further loss of semen quality

S. O’Brien, W. Johnson, S. O'Brien, 2016 .

T. Caro, S. O’Brien, J. Brown, 1987, Biology of reproduction.

Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary

Svante Pääbo, Johannes Krause, Mathias Stiller, 2008, BMC Evolutionary Biology.

Evaluation of IL10, IL19 and IL20 gene polymorphisms and chronic hepatitis B infection outcome

J. Goedert, S. O’Brien, C. Thio, 2008, International journal of immunogenetics.

A canine distemper virus epidemic in Serengeti lions (Panthera leo)

C. Packer, S. O’Brien, S. Cleaveland, 1996, Nature.

Unusual Polymorphisms in Human Immunodeficiency Virus Type 1 Associated with Nonprogressive Infection

B. Walker, S. O’Brien, M. Malim, 2000, Journal of Virology.

Tyrosinase and tyrosinase related protein 1 alleles specify domestic cat coat color phenotypes of the albino and brown loci.

S. O’Brien, M. Menotti-Raymond, E. Eizirik, 2005, The Journal of heredity.

Evolution of feline immunodeficiency virus in Felidae: implications for human health and wildlife ecology.

S. O’Brien, J. Pecon-Slattery, W. Johnson, 2008, Veterinary immunology and immunopathology.

PREVALENCE OF EXPOSURE TO FELINE IMMUNODEFICIENCY VIRUS IN EXOTIC FELID SPECIES

S. O’Brien, E. Brown, S. Miththapala, 1993 .

Nonpathogenic lion and puma lentiviruses impart resistance to superinfection by virulent feline immunodeficiency virus.

S. O’Brien, E. Hoover, S. Vandewoude, 2002 .

Analysis of multiple isoenzyme expression among twenty-two species of Mycoplasma and Acholeplasma

S. O’Brien, M. Barile, M. W. Grabowski, 1981, Journal of bacteriology.

Mutation discovered in a feline model of human congenital retinal blinding disease.

Stephen J O'Brien, S. O’Brien, K. Narfström, 2010, Investigative ophthalmology & visual science.

Establishment and characterization of three new continuous cell lines derived from human breast carcinomas.

S. O’Brien, M. Lippman, T. S. Tralka, 1978, Cancer research.

A Biochemical Genetic Map of D. melanogaster

S. O’Brien, R. MacIntyre, 1971 .

X Chromosome Evolution in Cetartiodactyla

S. O’Brien, O. Ryder, A. Graphodatsky, 2017, Genes.

Palaeontological and molecular views of panda phylogeny

S. O’Brien, W. Nash, D. Wildt, 1986, Nature.

The GLI-Kruppel family of human genes

S. O’Brien, K. Kinzler, B. Vogelstein, 1988, Molecular and cellular biology.

Identification of an amplified, highly expressed gene in a human glioma.

J. Trent, S. O’Brien, D. Bigner, 1987, Science.

Genome-Wide Association Study of MKI67 Expression and its Clinical Implications in HBV-Related Hepatocellular Carcinoma in Southern China

S. O’Brien, Z. Mo, X. Qin, 2017, Cellular Physiology and Biochemistry.

On estimating functional gene number in eukaryotes.

S. O’Brien, Stephen J. O'Brien, 1973, Nature: New biology.

The Feline Genome Project.

S. O’Brien, W. Murphy, M. Menotti-Raymond, 2002, Annual review of genetics.

Mammalian keratin associated proteins (KRTAPs) subgenomes: disentangling hair diversity and adaptation to terrestrial and aquatic environments

S. O’Brien, A. Antunes, W. Johnson, 2014, BMC Genomics.

Correlative genetic variation in natural populations of cats, mice and men

S. O’Brien, M. Gail, D. Levin, 1980, Nature.

New Gene Variants Associated with the Risk of Chronic HBV Infection

S. O’Brien, Jianguo Zhang, D. Zhernakova, 2020, Virologica Sinica.

Identified OAS3 gene variants associated with coexistence of HBsAg and anti‐HBs in chronic HBV infection

S. O’Brien, D. Zhernakova, L. Guan, 2018, Journal of viral hepatitis.

Mannose Binding Lectin Genotypes Influence Recovery from Hepatitis B Virus Infection

S. O’Brien, C. Thio, G. Kirk, 2005, Journal of Virology.

MICA and recovery from hepatitis C virus and hepatitis B virus infections

J. Goedert, M. Carrington, S. O’Brien, 2004, Genes and Immunity.

Immunologic and virologic response to highly active antiretroviral therapy in the Multicenter AIDS Cohort Study

J. Margolick, J. Phair, S. O’Brien, 2001, AIDS.

The Domestic Cat, Felis catus, as a Model of Hereditary and Infectious Disease

S. O’Brien, M. Menotti-Raymond, 2008, Sourcebook of Models for Biomedical Research.

The influence of HLA genotype on AIDS.

Stephen J O'Brien, Mary Carrington, M. Carrington, 2003, Annual review of medicine.

Human genes that limit AIDS

Stephen J O'Brien, S. O’Brien, G. Nelson, 2004, Nature Genetics.

The adequacy of morphology for reconstructing the early history of placental mammals.

Stephen J O'Brien, S. O’Brien, W. Murphy, 2007, Systematic biology.

Comparative genomics in vertebrates: a role for the platypus. Introduction.

S. O’Brien, 2009, Reproduction, fertility, and development.

Guidelines for Naming Nonprimate APOBEC3 Genes and Proteins

S. O’Brien, M. Malim, M. Emerman, 2008, Journal of Virology.

Phylogenomics of the dog and fox family (Canidae, Carnivora) revealed by chromosome painting

Fengtang Yang, S. O’Brien, M. Ferguson-Smith, 2008, Chromosome Research.

Accounting for multiple comparisons in a genome-wide association study (GWAS)

Stephen J O'Brien, S. O’Brien, C. Winkler, 2010, BMC Genomics.

On Choosing Mammalian Genomes for Sequencing

S. O’Brien, W. Murphy, E. Eizirik, 2001, Science.

Genomics. On choosing mammalian genomes for sequencing.

S. O’Brien, W. Murphy, E. Eizirik, 2001, Science.

Phylogeography and population history of Leopardus guigna, the smallest American felid

S. O’Brien, W. Johnson, C. Ritland, 2014, Conservation Genetics.

Molecular evidence for a recent demographic expansion in the puma (Puma concolor) (Mammalia, Felidae)

S. O’Brien, W. Johnson, E. Eizirik, 2013, Genetics and molecular biology.

Inter‐species hybridization among Neotropical cats of the genus Leopardus, and evidence for an introgressive hybrid zone between L. geoffroyi and L. tigrinus in southern Brazil

S. O’Brien, W. Johnson, E. Eizirik, 2008, Molecular ecology.

Phylogeography and subspecies assessment of vicuñas in Chile and Bolivia utilizing mtDNA and microsatellite markers: implications for vicuña conservation and management

S. O’Brien, W. Johnson, Benito A. González, 2004, Conservation Genetics.

Phylogeography, population history and conservation genetics of jaguars (Panthera onca, Mammalia, Felidae)

S. O’Brien, M. Menotti-Raymond, W. Johnson, 2001, Molecular ecology.

Genomic ancestry of the American puma (Puma concolor).

M. Culver, S. O’Brien, J. Pecon-Slattery, 2000, The Journal of heredity.

Molecular genetic characterization of two insular Asian cat species, Bornean bay cat and Iriomote cat

S. O’Brien, N. Yuhki, W. Johnson, 1999 .

Phylogeographic Patterns and Evolution of the Mitochondrial DNA Control Region in Two Neotropical Cats (Mammalia, Felidae)

F. Salzano, S. O’Brien, W. Johnson, 1998, Journal of Molecular Evolution.

Tracking the evolution of the elusive Andean mountain cat (Oreailurus jacobita) from mitochondrial DNA.

M. Culver, S. O’Brien, W. Johnson, 1998, The Journal of heredity.

Molecular Genetic Insights on Cheetah (Acinonyx jubatus) Ecology and Conservation in Namibia

S. O’Brien, W. Johnson, J. Martenson, 2007, The Journal of heredity.

Clouded leopard phylogeny revisited: support for species recognition and population division between Borneo and Sumatra

K., S. O’Brien, K. Linsenmair, 2007, Frontiers in Zoology.

Dating the genetic bottleneck of the African cheetah.

S. O’Brien, M. Menotti-Raymond, M. Menotti-Raymond, 1993, Proceedings of the National Academy of Sciences of the United States of America.

Phylogenetic assessment of introns and SINEs within the Y chromosome using the cat family felidae as a species tree.

S. O’Brien, W. Murphy, J. Pecon-Slattery, 2004, Molecular biology and evolution.

The Asian arowana (Scleropages formosus) genome provides new insights into the evolution of an early lineage of teleosts

Huanming Yang, Jian Wang, Jun Wang, 2016, Scientific Reports.

Comparative genomic structure of human, dog, and cat MHC: HLA, DLA, and FLA.

Robert Stephens, Stephen J O'Brien, S. O’Brien, 2007, The Journal of heredity.

Association of Y chromosome haplogroup I with HIV progression, and HAART outcome

J. Goedert, J. Phair, S. O’Brien, 2009, Human Genetics.

Examination of disease based selection, demographic history and population structure in European Y chromosome haplogroup I

J. Goedert, J. Phair, S. O’Brien, 2010, Journal of Human Genetics.

Safety issues in cell-based intervention trials.

S. O’Brien, A. Chakravarti, D. Solter, 2003, Fertility and sterility.

The Taming of the Cat

Juliet Clutton-Brock, Andrew C. Kitchener, Stephen J. O'Brien, 2009, Scientific American.

The Race FAQ-html

S. O’Brien, J. Goodrum, 2011 .

Chromosomal localization of the genes encoding two forms of the G protein β polypeptide, β1 and β3, in man

S. O’Brien, W. Modi, M. Levine, 1990 .

Extensive conservation of sex chromosome organization between cat and human revealed by parallel radiation hybrid mapping.

S. O’Brien, W. Murphy, J. Pecon-Slattery, 1999, Genome research.

Forensic Animal DNA Analysis

S. O’Brien, M. Menotti-Raymond, A. Linacre, 2014 .

Analytical DNA fingerprinting in lions: parentage, genetic diversity, and kinship.

J. Stephens, C. Packer, S. O’Brien, 1991, The Journal of heredity.

Genetic fingerprinting reflects population differentiation in the California Channel Island fox

S. O’Brien, N. Lehman, R. Wayne, 1990, Nature.

A High-Resolution SNP Array-Based Linkage Map Anchors a New Domestic Cat Draft Genome Assembly and Provides Detailed Patterns of Recombination

R. Wilson, L. Hillier, S. O’Brien, 2016, G3: Genes, Genomes, Genetics.

Specifying and Sustaining Pigmentation Patterns in Domestic and Wild Cats

J. Mullikin, G. Barsh, S. O’Brien, 2012, Science.

Evolution of a Major Drug Metabolizing Enzyme Defect in the Domestic Cat and Other Felidae: Phylogenetic Timing and the Role of Hypercarnivory

S. O’Brien, J. Goldstone, J. Reed, 2011, PloS one.

Molecular Phylogeny and Dating of Early Primate Divergences

S. O’Brien, W. Murphy, M. Springer, 2004 .

Molecular dating and biogeography of the early placental mammal radiation.

S. O’Brien, W. Murphy, E. Eizirik, 2001, The Journal of heredity.

ERV3, a full-length human endogenous provirus: chromosomal localization and evolutionary relationships.

S. O’Brien, W. Nash, C. O'Connell, 1984, Virology.

Mapping of an endogenous retroviral sequence to human chromosome 18

S. O’Brien, W. Nash, T. Bonner, 1983, Nature.

Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly

Yun Sung Cho, Jessica A. Weber, S. O’Brien, 2016, Genome Biology.

Rapid radiation events in the family Ursidae indicated by likelihood phylogenetic estimation from multiple fragments of mtDNA.

R. Ward, L. Waits, S. O’Brien, 1999, Molecular phylogenetics and evolution.

Nature and origin of polymorphism in feline MHC class II DRA and DRB genes.

S. O’Brien, N. Yuhki, Stephen J. O'Brien, 1997, Journal of immunology.

Big cat genomics.

S. O’Brien, W. Johnson, 2005, Annual review of genomics and human genetics.

Extended IL10 haplotypes and their association with HIV progression to AIDS

J. Goedert, J. Phair, S. O’Brien, 2009, Genes and Immunity.

Puma genomes from North and South America provide insights into the genomic consequences of inbreeding

Brendan L. O’Connell, Russell B. Corbett-Detig, S. O’Brien, 2019, Nature Communications.

Mountain lion genomes provide insights into genetic rescue of inbred populations

Brendan L. O’Connell, Russell B. Corbett-Detig, S. O’Brien, 2018, bioRxiv.

Genome-wide Evidence R eveals that African and Eurasian Golden Jackals Are Distinct Species Graphical

S. O’Brien, R. Wayne, O. Thalmann, 2015 .

Light whole genome sequence for SNP discovery across domestic cat breeds

Nancy F. Hansen, J. Mullikin, S. O’Brien, 2010, BMC Genomics.

Quantitative polymerase chain reaction-based assay for estimating DNA yield extracted from domestic cat specimens.

S. O’Brien, M. Menotti-Raymond, N. Yuhki, 2003, Croatian Medical Journal.

Epistatic interaction between KIR3DS1 and HLA-B delays the progression to AIDS

Keith Hoots, James J. Goedert, John Trowsdale, 2002, Nature Genetics.

Mammalian phylogenomics comes of age.

Pavel A Pevzner, Stephen J O'Brien, P. Pevzner, 2004, Trends in genetics : TIG.

Significant admixture linkage disequilibrium across 30 cM around the FY locus in African Americans.

J. Stephens, S. O’Brien, J. Lautenberger, 2000, American journal of human genetics.

Genomic evidence for the Chinese mountain cat as a wildcat conspecific (Felis silvestris bieti) and its introgression to domestic cats

S. O’Brien, Shu-Jin Luo, He Yu, 2020, Science Advances.

Genome-wide sequence analyses of ethnic populations across Russia.

S. O’Brien, O. Balanovsky, S. Limborska, 2020, Genomics.

Genomic differentiation among natural populations of orang-utan (Pongo pygmaeus)

S. O’Brien, W. Karesh, M. Andau, 1996, Current Biology.

Primate TNF Promoters Reveal Markers of Phylogeny and Evolution of Innate Immunity

S. O’Brien, J. V. Falvo, O. Ryder, 2007, PloS one.

Genomic inferences from Afrotheria and the evolution of elephants.

S. O’Brien, A. Roca, 2005, Current opinion in genetics & development.

Genome-wide characterization of centromeric satellites from multiple mammalian genomes.

Can Alkan, Francesca Antonacci, Stephen J O'Brien, 2011, Genome research.

Cytonuclear genomic dissociation in African elephant species

S. O’Brien, N. Georgiadis, A. Roca, 2005, Nature Genetics.

Evolution of mammalian genome organization inferred from comparative gene mapping

Stephen J O'Brien, S. O’Brien, W. Murphy, 2001, Genome Biology.

Evolution: A New Cat Species Emerges

S. O’Brien, K. Koepfli, Klaus‐Peter Koepfli, 2013, Current Biology.

Cyto-nuclear genomic dissociation and the African elephant species question.

S. O’Brien, N. Georgiadis, A. Roca, 2007, Quaternary international : the journal of the International Union for Quaternary Research.

Designing and optimizing comparative anchor primers for comparative gene mapping and phylogenetic inference

S. O’Brien, W. Murphy, 2007, Nature Protocols.

Status of the world's smallest mammal, the bumble-bee bat Craseonycteris thonglongyai, in Myanmar

Mie Mie Khin, S. O’Brien, E. Teeling, 2006, Oryx.

Patterns of molecular genetic variation among African elephant populations

S. O’Brien, N. Georgiadis, E. Ostrander, 2002, Molecular ecology.

The adaptive evolution of the mammalian mitochondrial genome

S. O’Brien, A. Antunes, W. Johnson, 2008, BMC Genomics.

The dynamic proliferation of CanSINEs mirrors the complex evolution of Feliforms

S. O’Brien, J. Pecon-Slattery, W. Johnson, 2014, BMC Evolutionary Biology.

Comparative genomics: The next generation

S. O’Brien, L. Lyons, M. Raymond, 1994 .

PGD: a pangolin genome hub for the research community

Guat Jah Wong, Naresh V. R. Mutha, Siew Woh Choo, 2016, Database J. Biol. Databases Curation.

A scan for linkage disequilibrium across the human genome.

M. Carrington, S. O’Brien, G. Huttley, 1999, Genetics.

Four independent mutations in the feline fibroblast growth factor 5 gene determine the long-haired phenotype in domestic cats.

A. Schäffer, S. O’Brien, M. Menotti-Raymond, 2007, The Journal of heredity.

Complete nucleotide sequences of the domestic cat (Felis catus) mitochondrial genome and a transposed mtDNA tandem repeat (Numt) in the nuclear genome.

J. V. López, S. O’Brien, S. O'Brien, 1996, Genomics.

Evolutionary analysis of a large mtDNA translocation (numt) into the nuclear genome of the Panthera genus species.

S. O’Brien, W. Nash, A. Antunes, 2006, Gene.

Mitochondrial introgressions into the nuclear genome of the domestic cat.

S. O’Brien, J. Pontius, A. Antunes, 2007, The Journal of heredity.

The effect of genetic variation in chemokines and their receptorson HIV transmission and progression to AIDS

S. O’Brien, John P. Moore, 2000, Immunological reviews.

Genome maps 10. Comparative genomics. Mammalian radiations. Wall chart.

J. Postlethwait, S. O’Brien, W. Nash, 1999, Science.

The cellular ets genes: molecular biology and clinical implications in human leukemias.

S. O’Brien, D. Watson, N. Sacchi, 1986, Cancer investigation.

Second-generation integrated genetic linkage/radiation hybrid maps of the domestic cat (Felis catus).

R. Agarwala, A. Schäffer, S. O’Brien, 2003, The Journal of heredity.

Sequencing the Genome of the Domestic Cat Felis catus

E. Lander, S. O’Brien, W. Murphy, 2002 .

A radiation hybrid mapping panel for the rhesus macaque.

S. O’Brien, W. Murphy, R. Desrosiers, 2001, The Journal of heredity.

Mammalian genome mapping: lessons and prospects.

S. O’Brien, Stephen J. O'Brien, 1991, Current opinion in genetics & development.

Mammalian genome organization: an evolutionary view.

S. O’Brien, H. Seuánez, J. Womack, 1988, Annual review of genetics.

The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes.

Todd H. Oakley, Adelaide C. Rhodes, S. Pomponi, 2014, The Journal of heredity.

Chromosomal localization of nucleic acid-binding proteins by affinity mapping: assignment of the IRE-binding protein gene to human chromosome 9.

M. Hentze, S. O’Brien, R. Klausner, 1989, Nucleic acids research.

Genetic Maps: Locus Maps of Complex Genomes

Stephen J. O'Brien, S. O’Brien, 1990 .

The Taming of the cat. Genetic and archaeological findings hint that wildcats became housecats earlier--and in a different place--than previously thought.

S. O’Brien, C. Driscoll, A. Kitchener, 2009, Scientific American.

Genetic restriction of HIV-1 pathogenesis to AIDS by promoter alleles of IL10.

J. Goedert, J. Stephens, S. O’Brien, 2000, Proceedings of the National Academy of Sciences of the United States of America.

Consistent Effects of TSG 101 Genetic Variability on Multiple Outcomes of Exposure to Human Immunodeficiency Virus Type 1 †

J. Goedert, M. Carrington, S. O’Brien, 2018 .

Consistent Effects of TSG101 Genetic Variability on Multiple Outcomes of Exposure to Human Immunodeficiency Virus Type 1

J. Goedert, M. Carrington, S. O’Brien, 2006, Journal of Virology.

A Molecular Classification for the Living Orders of Placental Mammals and the Phylogenetic Placement of Primates

S. O’Brien, W. Murphy, E. Teeling, 2007 .

Comparative gene mapping in the domestic cat (Felis catus).

J. Spencer, S. O’Brien, W. Nash, 1997, The Journal of heredity.

Genetic maps 1987. A compilation of linkage and reconstruction maps of genetically studied organisms. Volume 4.

S. O’Brien, 1984 .

De novo sequencing, assembly and analysis of eight different transcriptomes from the Malayan pangolin

Guat Jah Wong, S. O’Brien, S. Choo, 2016, Scientific Reports.

Comparative genetic mapping of cellular rel sequences in man, mouse, and the domestic cat.

S. O’Brien, C. Kozak, W. Modi, 1986, American journal of human genetics.

Recurrent Evolution of Melanism in South American Felids

D. Absher, G. Barsh, S. O’Brien, 2015, PLoS genetics.

Phylogenetics, genome diversity and origin of modern leopard, Panthera pardus

S. O’Brien, W. Johnson, H. Quigley, 2001, Molecular ecology.

Disparate phylogeographic patterns of molecular genetic variation in four closely related South American small cat species

S. O’Brien, W. Johnson, E. Eizirik, 1999, Molecular ecology.

Genetic and phylogenetic divergence of feline immunodeficiency virus in the puma (Puma concolor)

M. Culver, S. O’Brien, J. Pecon-Slattery, 1996, Journal of virology.

A family matter: conclusive resolution of the taxonomic position of the long-fingered bats, miniopterus.

S. O’Brien, W. Murphy, E. Teeling, 2007, Molecular biology and evolution.

Pattern and timing of diversification of the mammalian order Carnivora inferred from multiple nuclear gene sequences.

S. O’Brien, W. Murphy, R. Wayne, 2010, Molecular Phylogenetics and Evolution.

Molecular genetic characterization of the RD-114 gene family of endogenous feline retroviral sequences

S. O’Brien, R. Reeves, 1984, Journal of virology.

Every genome sequence needs a good map.

Stephen J O'Brien, Denis M Larkin, Harris A Lewin, 2009, Genome research.

The Platypus Genome Unraveled

S. O’Brien, 2008, Cell.

Nucleotide sequence analysis of puma lentivirus (PLV-14): genomic organization and relationship to other lentiviruses.

S. O’Brien, R. Langley, R. Olmsted, 1994, Virology.

Comparative genome organization of human, murine, and feline MHC class II region.

Stephen J O'Brien, S. O’Brien, R. Stephens, 2003, Genome research.

Application of DNA fingerprints for cell-line individualization.

S. O’Brien, M. Gail, D. Pee, 1990, American journal of human genetics.

Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND)

Benjamin J. Keller, C. Rotimi, R. Elston, 2015, PLoS genetics.

On the Evolution of Genome Organization in Mammals

S. O’Brien, H. Seuánez, J. Womack, 1985 .

Cloning and mapping of cat (Felis catus) immunoglobulin and T-cell receptor genes

S. O’Brien, H. Satoh, A. Hasegawa, 1998, Immunogenetics.

Exclusive and Persistent Use of the Entry Coreceptor CXCR4 by Human Immunodeficiency Virus Type 1 from a Subject Homozygous for CCR5 Δ32

S. O’Brien, J. Mascola, T. O'Brien, 1998, Journal of Virology.

The ets sequence from the transforming gene of avian erythroblastosis virus, E26, has unique domains on human chromosomes 11 and 21: both loci are transcriptionally active.

S. O’Brien, P. Duesberg, D. Watson, 1985, Proceedings of the National Academy of Sciences of the United States of America.

The avian and mammalian ets genes: molecular characterization, chromosome mapping, and implication in human leukemia.

S. O’Brien, D. Watson, N. Sacchi, 1986, Anticancer research.

Clonal variation of MCF-7 breast cancer cells in vitro and in athymic nude mice.

S. O’Brien, T. Triche, K. Seibert, 1983, Cancer research.

Cell culture forensics

S. O’Brien, 2001, Proceedings of the National Academy of Sciences of the United States of America.

Detecting single base substitutions as heteroduplex polymorphisms.

S. O’Brien, M. White, M. Dean, 1992, Genomics.

Molecular genetic evidence for social group disruption of wild vicuñas Vicugna vicugna captured for wool harvest in Chile

S. O’Brien, W. Johnson, Benito A. González, 2009 .

Seroprevalence of Toxoplasma gondii in American free-ranging or captive pumas (Felis concolor) and bobcats (Lynx rufus).

S. O’Brien, B. Chomel, R. Kasten, 2004, Veterinary parasitology.

Patterns of Feline Immunodeficiency Virus Multiple Infection and Genome Divergence in a Free-Ranging Population of African Lions

C. Packer, S. O’Brien, J. Pecon-Slattery, 2004, Journal of Virology.

Coadaptation and immunodeficiency virus: lessons from the Felidae.

S. O’Brien, M. Carpenter, 1995, Current opinion in genetics & development.

EPIZOOTIOLOGY AND MANAGEMENT OF FELINE LEUKEMIA VIRUS IN THE FLORIDA PUMA

S. O’Brien, M. Roelke, J. Troyer, 2008, Journal of wildlife diseases.

Exposure to FIV and FIPV in wild and captive cheetahs

S. O’Brien, E. Brown, R. Olmsted, 2005, Zoo Biology.

Comparative features of a coronavirus isolated from a cheetah with feline infectious peritonitis

S. O’Brien, J. Heeney, J. Evermann, 1989, Virus Research.

Parallels of genomic organization and of endogenous retrovirus organization in cat and man

S. O’Brien, W. Nash, R. Reeves, 1983 .

Molecular and Biochemical Evolution of the Carnivora

S. O’Brien, R. Wayne, R. Benveniste, 1989 .

Evidence for the horizontal acquisition of murine AKR virogenes by recent horizontal infection of the germ line

S. O’Brien, M. Martin, J. Womack, 1982, The Journal of experimental medicine.

Mammalian keratin associated proteins (KRTAPs) subgenomes: disentangling hair diversity and adaptation to terrestrial and aquatic environments

S. O’Brien, A. Antunes, W. Johnson, 2014, BMC Genomics.

HLA and NK Cell Inhibitory Receptor Genes in Resolving Hepatitis C Virus Infection

Salim I. Khakoo, James J. Goedert, David Vlahov, 2004, Science.

Association Study of Common Genetic Variants and HIV-1 Acquisition in 6,300 Infected Cases and 7,200 Controls

Paul J. McLaren, Jacques Fellay, David B. Goldstein, 2013, PLoS pathogens.

Multistage genomewide association study identifies a locus at 1q41 associated with rate of HIV-1 disease progression to clinical AIDS.

J. Goedert, J. Margolick, S. O’Brien, 2010, The Journal of infectious diseases.

AIDS restriction HLA allotypes target distinct intervals of HIV-1 pathogenesis

J. Goedert, M. Altfeld, M. Carrington, 2005, Nature Medicine.

Genetic mapping in mammals: chromosome map of domestic cat.

S. O’Brien, W. Nash, 1982, Science.

Genetic variance of laboratory outbred Swiss mice

Stephen J. O'Brien, S. O’Brien, S. O'Brien, 1980, Nature.

Feline arylsulfatase B (ARSB): isolation and expression of the cDNA, comparison with human ARSB, and gene localization to feline chromosome A1.

S. O’Brien, N. Yuhki, R. Desnick, 1992, Genomics.

Evaluation of nonviral risk factors for nasopharyngeal carcinoma in a high‐risk population of Southern China

S. O’Brien, C. Winkler, Xiuchan Guo, 2009, International journal of cancer.

Influence of culture medium and protein supplementation on in vitro oocyte maturation and fertilization in the domestic cat.

S. O’Brien, D. Wildt, A. Donoghue, 1993, Theriogenology.

Molecular genetics in the domestic cat and its relatives

S. O’Brien, 1986 .

Leukemia Viruses of Recent Origin Genomically Intact Endogenous Feline

S. O’Brien, A. Roca, J. Pecon-Slattery, 2014 .

Insertional Polymorphisms of Endogenous Feline Leukemia Viruses

S. O’Brien, W. Nash, W. Murphy, 2005, Journal of Virology.

Genomically Intact Endogenous Feline Leukemia Viruses of Recent Origin

Stephen J. O'Brien, S. O’Brien, A. Roca, 2004, Journal of Virology.

The origin of human chromosome 1 and its homologs in placental mammals.

Stephen J O'Brien, S. O’Brien, W. Murphy, 2003, Genome research.

Mammals The Origin of Human Chromosome 1 and Its Homologs in Placental data

S. O’Brien, W. Murphy, R. Stanyon, 2003 .

Conservation genetics of the Far Eastern leopard (Panthera pardus orientalis).

S. O’Brien, H. Quigley, D. Miquelle, 2002, The Journal of heredity.

DNA variation of the mammalian major histocompatibility complex reflects genomic diversity and population history.

S. O’Brien, N. Yuhki, 1990, Proceedings of the National Academy of Sciences of the United States of America.

The Cheetah in Genetic Peril

S. O’Brien, D. Wildt, M. Bush, 1986 .

The consequences of demographic reduction and genetic depletion in the endangered Florida panther

S. O’Brien, M. Roelke, J. Martenson, 1993, Current Biology.

Regional localization of rDNA gene on pig chromosome 10 by in situ hybridization.

S. O’Brien, Y. Miyake, Y. Kaneda, 1988, Nihon juigaku zasshi. The Japanese journal of veterinary science.

Comparative genomics: tracking chromosome evolution in the family Ursidae using reciprocal chromosome painting

S. O’Brien, W. Nash, J. Wienberg, 1999, Cytogenetic and Genome Research.

Chromosomal evolution of the Canidae. II. Divergence from the primitive carnivore karyotype.

S. O’Brien, W. Nash, R. Wayne, 1987, Cytogenetics and cell genetics.

Comparative Chromosome Mapping of Musk Ox and the X Chromosome among Some Bovidae Species

S. O’Brien, A. Graphodatsky, D. Larkin, 2019, Genes.

Genetic Characterization of Feline Leukemia Virus from Florida Panthers

S. O’Brien, A. Roca, W. Johnson, 2008, Emerging infectious diseases.

Integrated analysis of competing endogenous RNA network revealing potential prognostic biomarkers of hepatocellular carcinoma

S. O’Brien, C. Winkler, Rui Huang, 2019, Journal of Cancer.

Cytogenetic methodologies for gene mapping and comparative analyses in mammalian cell culture systems.

S. O’Brien, W. Nash, W. Modi, 1987, Gene analysis techniques.

Elephant seal genetic variation and the use of simulation models to investigate historical population bottlenecks.

S. O’Brien, K. Ralls, B. L. Le Boeuf, 1993, The Journal of heredity.

A role for molecular genetics in biological conservation.

S. O’Brien, S. O'Brien, 1994, Proceedings of the National Academy of Sciences of the United States of America.

Linkage map of corn (maize) (Zea mays L.), March 1982.

S. O’Brien, D. Hoisington, E. Coe, 1984 .

The Human Genes that Limit AIDS

M. Carrington, S. O’Brien, C. Winkler, 2000 .

The -glycerophosphate in Drosophila melanogaster. II. Genetic aspects.

S. O’Brien, R. Macintyre, 1972, Genetics.

Genetic characterization of canine distemper virus in Serengeti carnivores.

S. O’Brien, H. Hofer, M. East, 1998, Veterinary immunology and immunopathology.

Regulatory Polymorphisms in the Cyclophilin A Gene, PPIA, Accelerate Progression to AIDS

J. Goedert, S. O’Brien, C. Winkler, 2007, PLoS pathogens.

Host genomic influences on HIV/AIDS

S. O’Brien, Sher L. Hendrickson, 2013, Genome Biology.

Polymorphisms of CUL5 Are Associated with CD4+ T Cell Loss in HIV-1 Infected Individuals

J. Goedert, J. Phair, S. O’Brien, 2007, PLoS genetics.

Estimation of heterozygosity for single-probe multilocus DNA fingerprints.

J. Stephens, S. O’Brien, N. Yuhki, 1992, Molecular biology and evolution.

Balanced polymorphism selected by genetic versus infectious human disease.

Michael Dean, Stephen J O'Brien, Mary Carrington, 2003, Annual review of genomics and human genetics.

The interleukin 3 gene is located on human chromosome 5 and is deleted in myeloid leukemias with a deletion of 5 q ( gene mapping / hematopoietic growth factors / chromosomal deletions / malignant transformation )

S. O’Brien, J. Rowley, M. L. Beau, 2022 .

In search of AIDS-resistance genes.

S. O’Brien, M. Dean, S J O'Brien, 1997, Scientific American.

Detecting AIDS restriction genes: from candidate genes to genome-wide association discovery.

J. Goedert, J. Phair, S. O’Brien, 2008, Vaccine.

Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens

S. O’Brien, T. Marquès-Bonet, S. Ho, 2020, Current Biology.

Host Genetic Influences on Highly Active Antiretroviral Therapy Efficacy and AIDS-Free Survival

J. Goedert, J. Margolick, J. Phair, 2008, Journal of acquired immune deficiency syndromes.

Long-term nonprogressive infection with human immunodeficiency virus type 1 in a hemophilia cohort.

J L Sullivan, S. O’Brien, T. Greenough, 1999, The Journal of infectious diseases.

Effects of plasma HIV RNA, CD4+ T lymphocytes, and the chemokine receptors CCR5 and CCR2b on HIV disease progression in hemophiliacs. Hemophilia Growth and Development Study.

S. O’Brien, C. Winkler, E. Daar, 1999, Journal of acquired immune deficiency syndromes.

The HIV-AIDS Debate is Over

S. O’Brien, 1997 .

Evolution of CRISPs associated with toxicoferan-reptilian venom and mammalian reproduction.

S. O’Brien, A. Antunes, W. Johnson, 2012, Molecular biology and evolution.

Partial structure of the human α2(IV) collagen chain and chromosomal localization of the gene (COL4A2)

S. O’Brien, W. Modi, Yoshihiko Yamada, 1987, Human Genetics.

GSTM1 and GSTT1 Gene Deletions and the Risk for Nasopharyngeal Carcinoma in Han Chinese

S. O’Brien, C. Winkler, Xiuchan Guo, 2008, Cancer Epidemiology Biomarkers & Prevention.

Evolutionary analysis of the 5'-terminal region of hepatitis G virus isolated from different regions in China.

S. O’Brien, C. Winkler, P. An, 1997, The Journal of general virology.

CCR-5 genotype and sexual transmission of HIV-1.

J. Goedert, M. Carrington, S. O’Brien, 1998, AIDS.

Pandas, people and policy

S. O’Brien, P. Wenshi, L. Zhi, 1994, Nature.

Human Immunodeficiency Virus Type 1 (HIV-1)-Specific CD8+-T-Cell Responses for Groups of HIV-1-Infected Individuals with Different HLA-B*35 Genotypes

J. Goedert, M. Carrington, S. O’Brien, 2002, Journal of Virology.

Allozyme Divergence Within the Canidae

S. O’Brien, R. Wayne, 1987 .

KIR/HLA Pleiotropism: Protection against Both HIV and Opportunistic Infections

J. Goedert, M. Carrington, S. O’Brien, 2006, PLoS pathogens.

HLA and AIDS: a cautionary tale.

M. Carrington, S. O’Brien, X. Gao, 2001, Trends in molecular medicine.

Comprehensive Analysis of Class I and Class II HLA Antigens and Chronic Hepatitis B Virus Infection

J. Goedert, M. Carrington, S. O’Brien, 2003, Journal of Virology.

Subspecific Status of the Korean Tiger Inferred by Ancient DNA Analysis

S. O’Brien, W. Johnson, Hang Lee, 2012 .

A suite of genetic markers useful in assessing wildcat (Felis silvestris ssp.)-domestic cat (Felis silvestris catus) admixture.

S. O’Brien, D. Macdonald, C. Driscoll, 2011, The Journal of heredity.

Fish lateral line innovation: insights into the evolutionary genomic dynamics of a unique mechanosensory organ.

S. O’Brien, A. Antunes, W. Johnson, 2012, Molecular biology and evolution.

East African cheetahs: evidence for two population bottlenecks?

T. Caro, R. Leakey, S. O’Brien, 1987, Proceedings of the National Academy of Sciences of the United States of America.

An autosomal genetic linkage map of the domestic cat, Felis silvestris catus.

A. Schäffer, S. O’Brien, J. Pontius, 2009, Genomics.

Karyotype Evolution in 10 Pinniped Species: Variability of Heterochromatin versus High Conservatism of Euchromatin as Revealed by Comparative Molecular Cytogenetics

S. O’Brien, O. Ryder, A. Graphodatsky, 2020, Genes.

State of cat genomics

S. O’Brien, J. Pontius, M. Menotti-Raymond, 2008, Trends in Genetics.

Plagues and adaptation: Lessons from the Felidae models for SARS and AIDS

S. O’Brien, J. Pecon-Slattery, M. Roelke, 2006, Biological Conservation.

Genomics in Conservation: Case Studies and Bridging the Gap between Data and Application.

Paul Sunnucks, Gordon Luikart, Stephen J O'Brien, 2016, Trends in ecology & evolution.

Patterns of diversity among SINE elements isolated from three Y-chromosome genes in carnivores.

S. O’Brien, W. Murphy, J. Slattery, 2000, Molecular biology and evolution.

Considering genetic profiles in functional studies of immune responsiveness to HIV-1.

M. Carrington, S. O’Brien, G. Nelson, 2001, Immunology letters.

Radiation hybrid mapping of 304 novel microsatellites in the domestic cat genome

R. Agarwala, A. Schäffer, S. O’Brien, 2004, Cytogenetic and Genome Research.

A 1.5-Mb-resolution radiation hybrid map of the cat genome and comparative analysis with the canine and human genomes.

Brian Davis, Richa Agarwala, Alejandro A Schäffer, 2007, Genomics.

Coronavirus outbreak in cheetahs: Lessons for SARS

S. O’Brien, E. Teeling, J. Pecon-Slattery, 2004, Current Biology.

The complete mitochondrial genome of the parthenogenetic Caucasian rock lizard Darevskia unisexualis (Squamata: lacertidae) contains long tandem repeat formed by 59 bp monomer

S. O’Brien, P. Dobrynin, A. Komissarov, 2016, Mitochondrial DNA. Part B, Resources.

The Principal Genetic Determinants for Nasopharyngeal Carcinoma in China Involve the HLA Class I Antigen Recognition Groove

M. Carrington, S. O’Brien, C. Winkler, 2012, PLoS genetics.

Molecular Evidence for Species-Level Distinctions in Clouded Leopards

S. O’Brien, W. Johnson, M. Roelke, 2006, Current Biology.

A human genome map of comparative anchor tagged sequences.

S. O’Brien, J. Lautenberger, L. McKenzie, 1999, The Journal of heredity.

Comparative genomics: lessons from cats.

S. O’Brien, J. Wienberg, S. O'Brien, 1997, Trends in genetics : TIG.

Integration of the feline radiation hybrid and linkage maps

S. O’Brien, W. Murphy, M. Menotti-Raymond, 2001, Mammalian Genome.

HLA-Cw*04 and Hepatitis C Virus Persistence

J. Goedert, M. Carrington, S. O’Brien, 2002, Journal of Virology.

HLA-B Bw4 alleles and HIV-1 transmission in heterosexual couples

J. Goedert, M. Carrington, S. O’Brien, 2007, AIDS.

Effect of Genetic Variation on HIV Transmission and Progression to AIDS

S. O’Brien, C. Winkler, 2002 .

Patterns of ethnic diversity among the genes that influence AIDS.

S. O’Brien, C. Winkler, P. An, 2004, Human molecular genetics.

Genome-wide association study reveals genetic variants associated with HIV-1C infection in a Botswana study population

Prisca K. Thami, S. O’Brien, D. Vlahov, 2021, Proceedings of the National Academy of Sciences.

Genetic Protection against Hepatitis B Virus Conferred by CCR5Δ32: Evidence that CCR5 Contributes to Viral Persistence

J. Goedert, M. Carrington, S. O’Brien, 2006, Journal of Virology.

Effect of Host Genetics on Incidence of HIV Neuroretinal Disorder in Patients With AIDS

S. O’Brien, R. Lewis, M. V. Van Natta, 2010, Journal of acquired immune deficiency syndromes.

Gene conversion between mammalian CCR2 and CCR5 chemokine receptor genes: a potential mechanism for receptor dimerization.

S. O’Brien, W. Murphy, N. Yuhki, 2007, Genomics.

Effects of human TRIM5α polymorphisms on antiretroviral function and susceptibility to human immunodeficiency virus infection

Roger Detels, Bert Gold, Joseph Sodroski, 2006 .

Genetic variation in the CCL18-CCL3-CCL4 chemokine gene cluster influences HIV Type 1 transmission and AIDS disease progression.

J. Goedert, J. Phair, S. O’Brien, 2006, American journal of human genetics.

Behavioral risk exposure and host genetics of susceptibility to HIV-1 infection.

S. O’Brien, D. Vlahov, M. Fallin, 2006, The Journal of infectious diseases.

C-C chemokines, pivotal in protection against HIV type 1 infection.

S. O’Brien, A. Burny, E. Santagostino, 1998, Proceedings of the National Academy of Sciences of the United States of America.

Non-Hodgkin's B cell lymphoma in persons with acquired immunodeficiency syndrome is associated with increased serum levels of IL10, or the IL10 promoter -592 C/C genotype.

S. O’Brien, J. Chmiel, R. Detels, 2003, Clinical immunology.

Single nucleotide polymorphisms and haplotypes in the IL10 region associated with HCV clearance

J. Goedert, S. O’Brien, C. Thio, 2005, Genes and Immunity.

Primary cultures of human colon cancer as a model to study cancer stem cells

S. O’Brien, E. Tolkunova, A. Tomilin, 2016, Tumor Biology.

Hepatitis B Virus Infection Class II HLA Antigens and Chronic Comprehensive Analysis of Class I and

J. Goedert, S. O’Brien, C. Thio, 2014 .

An analysis of tumor necrosis factor α gene polymorphisms and haplotypes with natural clearance of hepatitis C virus infection

J. Goedert, S. O’Brien, D. Vlahov, 2004, Genes and Immunity.

Lack of Associations Between HLA Class II Alleles and Resistance to HIV-1 Infection Among White, Non-Hispanic Homosexual Men

M. Carrington, J. Margolick, J. Phair, 2004, Journal of acquired immune deficiency syndromes.

The α-Glycerophosphate Cycle in Drosophila melanogaster. III. Relative Viability of "Null" Mutants at the α-Glycerophosphate Dehydrogenase-1 Locus

S. O’Brien, B. Wallace, R. Macintyre, 1972, The American Naturalist.

Mitochondrial DNA Haplogroups Influence Lipoatrophy After Highly Active Antiretroviral Therapy

S. O’Brien, L. Kingsley, D. Wallace, 2009, Journal of acquired immune deficiency syndromes.

Analyses of sweet receptor gene (Tas1r2) and preference for sweet stimuli in species of Carnivora.

S. O’Brien, W. Johnson, J. Brand, 2009, The Journal of heredity.

GADMA: Genetic algorithm for inferring demographic history of multiple populations from allele frequency spectrum data

Vladimir Ulyantsev, Ekaterina Noskova, Klaus-Peter Koepfli, 2020, GigaScience.

Molecular cloning, chromosomal assignment, and nucleotide sequence of the feline homeobox HOX3A.

S. O’Brien, N. Yuhki, R. Masuda, 1991, Genomics.

Defining and Mapping Mammalian Coat Pattern Genes: Multiple Genomic Regions Implicated in Domestic Cat Stripes and Spots

A. Schäffer, S. O’Brien, K. Narfström, 2010, Genetics.

Patterns of molecular genetic variation among cat breeds.

K. Lindblad-Toh, S. O’Brien, C. Wade, 2008, Genomics.

Multicohort genomewide association study reveals a new signal of protection against HIV-1 acquisition.

O. Delaneau, S. O’Brien, C. Winkler, 2012, The Journal of infectious diseases.

Genetic Variants in Nuclear-Encoded Mitochondrial Genes Influence AIDS Progression

J. Goedert, S. O’Brien, L. Kingsley, 2010, PloS one.

Using mutual information to measure the impact of multiple genetic factors on AIDS.

Stephen J O'Brien, S. O’Brien, G. Nelson, 2006, Journal of acquired immune deficiency syndromes.

Association of polymorphisms in human leukocyte antigen class I and transporter associated with antigen processing genes with resistance to human immunodeficiency virus type 1 infection.

M. Carrington, J. Margolick, J. Phair, 2003, The Journal of infectious diseases.

Haplotype-dependent HLA susceptibility to nasopharyngeal carcinoma in a Southern Chinese population

M. Carrington, S. O’Brien, C. Winkler, 2010, Genes and Immunity.

Diversity of MICA and linkage disequilibrium with HLA-B in two North American populations.

M. Carrington, S. O’Brien, R. Single, 2006, Human Immunology.

iversity of MICA and Linkage isequilibrium with HLA-B in Two North merican Populations

S. O’Brien, R. Single, P. Karacki, 2006 .

Haplotype analysis of the SDF-1 (CXCL12) gene in a longitudinal HIV-1/AIDS cohort study

J. Goedert, S. O’Brien, D. Vlahov, 2005, Genes and Immunity.

Haplotype diversity in the interleukin-4 gene is not associated with HIV-1 transmission and AIDS progression

J. Phair, S. O’Brien, D. Vlahov, 2003, Immunogenetics.

Mitochondrial DNA haplogroups influence AIDS progression

J. Goedert, S. O’Brien, D. Vlahov, 2008, AIDS.

Cytotoxic T-Lymphocyte Antigen 4 Gene and Recovery from Hepatitis B Virus Infection

S. O’Brien, D. Vlahov, C. Thio, 2004, Journal of Virology.

Chromosome painting shows that skunks (Mephitidae, Carnivora) have highly rearranged karyotypes

S. O’Brien, J. Wang, A. Graphodatsky, 2008, Chromosome Research.

Biochemical loci of hexaploid wheat (Triticum aestivum, 2n = 42, genomes AABBDD).

S. O’Brien, G. Hart, 1984 .

Evaluating association and transmission of eight inflammatory genes with Viliuisk encephalomyelitis susceptibility.

S. O’Brien, Taras K. Oleksyk, S. Shrestha, 2004, European journal of immunogenetics : official journal of the British Society for Histocompatibility and Immunogenetics.

CCR2 chemokine receptor and AIDS progression

Michael Dean, Gavin Huttley, Mary Carrington, 1997, Nature Medicine.

Reduced risk of AIDS lymphoma in individuals heterozygous for the CCR5-delta32 mutation.

J. Goedert, M. Carrington, J. Margolick, 1999, Cancer research.

HIV-1 Infection in Individuals With the CCR5-Δ32/Δ32 Genotype: Acquisition of Syncytium-Inducing Virus at Seroconversion

M. Carrington, S. O’Brien, H. Sheppard, 2002 .

Genome Annotation Resource Fields--GARFIELD: a genome browser for Felis catus.

S. O’Brien, J. Pontius, 2007, The Journal of heredity.

FIV diversity: FIV Ple subtype composition may influence disease outcome in African lions.

C. Packer, S. O’Brien, M. Craft, 2011, Veterinary immunology and immunopathology.

Correction: Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding

Lawrence S. Hon, Tyler H. Garvin, M. Schatz, 2016, PLoS genetics.

Association of host genetic risk factors with the course of cytomegalovirus retinitis in patients infected with human immunodeficiency virus.

S. O’Brien, S. Srivastava, M. V. Van Natta, 2011, American journal of ophthalmology.

Diversity and duplication of DQB and DRB-like genes of the MHC in baleen whales (suborder: Mysticeti)

S. O’Brien, N. Yuhki, G. Lento, 2006, Immunogenetics.

Markers for mapping by admixture linkage disequilibrium in African American and Hispanic populations.

S. O’Brien, J. Lautenberger, H. D. Shin, 2001, American journal of human genetics.

Molecular genetic diversity and evolution at the MHC DQB locus in four species of pinnipeds.

J. Stephens, S. O’Brien, A. R. Hoelzel, 1999, Molecular biology and evolution.

Equine synteny mapping of comparative anchor tagged sequences (CATS) from human Chromosome 5

T. F. Laughlin, S. O’Brien, A. R. Caetano, 1999, Mammalian Genome.

Development of comparative anchor tagged sequences (CATS) for canine genome mapping.

S. O’Brien, J. Kehler, L. Lyons, 1999, The Journal of heredity.

Intentional genetic introgression influences survival of adults and subadults in a small, inbred felid population.

S. O’Brien, W. Johnson, J. F. Benson, 2011, The Journal of animal ecology.

Establishment of a biochemical genetic map of the domestic cat (Felis catus).

S. O’Brien, W. Nash, J. Simonson, 1980 .

Rates of nuclear and cytoplasmic mitochondrial DNA sequence divergence in mammals.

J. V. López, M. Culver, J. Stephens, 1997, Molecular biology and evolution.

HIV-1 infection in individuals with the CCR5-Delta32/Delta32 genotype: acquisition of syncytium-inducing virus at seroconversion.

M. Carrington, S. O’Brien, S. Buchbinder, 2002, Journal of acquired immune deficiency syndromes.

A new moderately repetitive DNA sequence family of novel organization.

S. O’Brien, S. Karlsson, A. Nienhuis, 1987, Nucleic acids research.

Linkage mapping of human polymorphic proteins identified by two-dimensional electrophoresis.

S. O’Brien, M. Dean, D. Goldman, 1991, Genomics.

Exchanges of short polymorphic DNA segments predating speciation in feline major histocompatibility complex class I genes

S. O’Brien, N. Yuhki, 1994, Journal of Molecular Evolution.

CCR5 promoter alleles and specific DNA binding factors.

M. Carrington, S. O’Brien, N. Rice, 1999, Science.

Resolution of recent radiations within three evolutionary lineages of felidae using mitochondrial restriction fragment length polymorphism variation

S. O’Brien, W. Johnson, J. Martenson, 1996, Journal of Mammalian Evolution.

Molecular phylogeny of mitochondrial cytochrome b and 12S rRNA sequences in the Felidae: ocelot and domestic cat lineages.

J. V. López, S. O’Brien, N. Yuhki, 1996, Molecular phylogenetics and evolution.

Molecular distance and divergence time in carnivores and primates.

S. O’Brien, R. Wayne, S. O'Brien, 1991, Molecular biology and evolution.

Quantitative Cladistic Analyses of Chromosomal Banding Data Among Species in Three Orders of Mammals: Hominoid Primates, Felids and Arvicolid Rodents

S. O’Brien, W. Modi, 1988 .

Advances in Brief Reduced Risk of AIDS Lymphoma in Individuals Heterozygous for the CCR 5D 32 Mutation 1

J. Goedert, M. Carrington, J. Margolick, 1999 .

Distribution of two HIV-1-resistant polymorphisms (SDF1-3'A and CCR2-64I) in East Asian and world populations and its implication in AIDS epidemiology.

L. Jin, Jingchun Luo, S. O’Brien, 1999, American journal of human genetics.

The ancestral carnivore karyotype (2n = 38) lives today in ringtails.

S. O’Brien, W. Nash, P. Perelman, 2008, The Journal of heredity.

Whole-Genome Identification, Phylogeny, and Evolution of the Cytochrome P450 Family 2 (CYP2) Subfamilies in Birds

S. O’Brien, E. Jarvis, A. Antunes, 2016, Genome biology and evolution.

Genomic microsatellites as evolutionary chronometers: a test in wild cats.

D. Goldstein, S. O’Brien, M. Menotti-Raymond, 2002, Genome research.

Murine retroviral restriction genes Fv-4 and Akvr-1 are alleles of a single locus

S. O’Brien, M. Gardner, J. Estes, 1983, Journal of virology.

The long and short of nuclear mitochondrial DNA (Numt) lineages.

J. Stephens, S. O’Brien, J. Lopez, 1997, Trends in ecology & evolution.

An STR forensic typing system for genetic individualization of domestic cat (Felis catus) samples.

S. O’Brien, J. Butler, M. Menotti-Raymond, 2005, Journal of forensic sciences.

Prospects for Comparative Genome Analyses Among Mammals

S. O’Brien, L. Lyons, 1996 .

Genetic analysis in mammals: past, present, and future.

S. O’Brien, 1986, Basic life sciences.

Chromosomal mapping of enzyme loci in the domestic cat: GSR to C2, ADA and ITPA to A3, and LDHA-ACP2 to D1.

S. O’Brien, W. Nash, H. Seuánez, 1986, Cytogenetics and cell genetics.

A molecular solution to the riddle of the giant panda's phylogeny

S. O’Brien, W. Nash, D. Wildt, 1985, Nature.

Conservation Genetics of the Felidae

S. O’Brien, 1996 .

Nuclear gene sequences confirm an ancient link between New Zealand's short-tailed bat and South American noctilionoid bats.

S. O’Brien, W. Murphy, E. Teeling, 2003, Molecular Phylogenetics and Evolution.

Inherited Motor Neuron Disease in Domestic Cats: A Model of Spinal Muscular Atrophy

S. O’Brien, J. Fyfe, W. Murphy, 2005, Pediatric Research.

A common HLA-DPA1 variant is a major determinant of hepatitis B virus clearance in Han Chinese.

S. O’Brien, C. Winkler, P. An, 2011, The Journal of infectious diseases.

Conservation Genetics of the Cheetah: Genetic History and Implications for Conservation

S. O’Brien, M. Menotti-Raymond, W. Johnson, 2018, Cheetahs: Biology and Conservation.

CCL3L1 and HIV/AIDS susceptibility

Kristen K. Dang, K. Shianna, D. Goldstein, 2009, Nature Medicine.

Phylogeographic Subspecies Recognition in Leopards (Panthera pardus): Molecular Genetic Variation

S. O’Brien, J. Seidensticker, S. Miththapala, 1996 .

Development of microsatellite markers in the guanaco, Lama guanicoe: utility for South American camelids

S. O’Brien, W. Johnson, V. David, 2000, Molecular ecology.

The future of the giant panda

S. O’Brien, J. Knight, 1987, Nature.

Linkage disequilibrium in admixed populations: applications in gene mapping.

J. Stephens, D. Briscoe, S. O’Brien, 1994, The Journal of heredity.

Molecular phylogeny of the red panda (Ailurus fulgens).

S. O’Brien, J. Slattery, Stephen J. O'brien, 1995, The Journal of heredity.

Conservation genetics of the koala (Phascolarctos cinereus): low mitochondrial DNA variation amongst southern Australian populations.

S. O’Brien, N. Yuhki, J. Graves, 1997, Genetical research.

Dissociative anaesthesia in free-ranging male koalas and selected marsupials in captivity.

S. O’Brien, D. Wildt, M. Bush, 1990, Australian veterinary journal.

Genetic Variations Affecting Serum Carcinoembryonic Antigen Levels and Status of Regional Lymph Nodes in Patients with Sporadic Colorectal Cancer from Southern China

S. O’Brien, C. Winkler, Jianfeng Xu, 2014, PloS one.

Infection Influence Recovery from Hepatitis B Virus Mannose Binding Lectin Genotypes

S. O’Brien, C. Thio, G. Kirk, 2005 .

Genetic factors leading to chronic Epstein-Barr virus infection and nasopharyngeal carcinoma in South East China: Study design, methods and feasibility

S. O’Brien, C. Winkler, J. Lautenberger, 2006, Human Genomics.

The Role of the Carcinoembryonic Antigen Receptor in Colorectal Cancer Progression

S. O’Brien, E. Tolkunova, A. Tomilin, 2017 .

Evolutionary conservation of ten microsatellite loci in four species of Felidae.

S. O’Brien, M. Menotti-Raymond, S. O'Brien, 1995, The Journal of heredity.

The Evolutionary Dynamics of the Lion Panthera leo Revealed by Host and Viral Population Genomics

C. Packer, S. O’Brien, A. Antunes, 2008, PLoS genetics.

Genome-wide Mycobacterium tuberculosis variation (GMTV) database: a new tool for integrating sequence variations and epidemiology

Vadim M Govorun, Elena S Kostryukova, S. O’Brien, 2014, BMC Genomics.

AIDS: a role for host genes.

S. O’Brien, 1998, Hospital practice.

Risk factors for symptomatic hyperlactatemia and lactic acidosis among combination antiretroviral therapy-treated adults in Botswana: results from a clinical trial.

Svetlana K. Eden, S. O’Brien, C. Winkler, 2012, AIDS research and human retroviruses.

Genetic Introgression and the Survival of Florida Panther Kittens.

J. Nichols, S. O’Brien, W. Johnson, 2010, Biological conservation.

Molecular evolution of mitochondrial 12S RNA and cytochrome b sequences in the pantherine lineage of Felidae.

J. Stephens, S. O’Brien, W. Modi, 1995, Molecular biology and evolution.

Rescue and maturation in vitro of follicular oocytes collected from nondomestic felid species.

S. O’Brien, D. Wildt, A. Donoghue, 1991, Biology of Reproduction.

Mitochondrial Phylogeography Illuminates the Origin of the Extinct Caspian Tiger and Its Relationship to the Amur Tiger

S. O’Brien, D. Macdonald, A. Roca, 2009, PloS one.

Koalas (Phascolarctos cinereus) From Queensland Are Genetically Distinct From 2 Populations in Victoria.

S. O’Brien, A. Roca, J. Graves, 2016, The Journal of heredity.

Seroprevalence of Bartonella infection in American free-ranging and captive pumas (Felis concolor) and bobcats (Lynx rufus).

S. O’Brien, V. Kramer, K. Murphy, 2004, Veterinary Research.

Bone-associated gene evolution and the origin of flight in birds

S. O’Brien, E. Jarvis, A. Antunes, 2016, BMC Genomics.

Conservation Genetics of the Cheetah: Lessons Learned and New Opportunities

S. O’Brien, W. Johnson, C. Driscoll, 2017, The Journal of heredity.

Ultracontinuous Single Haplotype Genome Assemblies for the Domestic Cat (Felis catus) and Asian Leopard Cat (Prionailurus bengalensis)

S. O’Brien, W. Murphy, W. Warren, 2020, The Journal of heredity.

Structure and patterns of sequence variation in the mitochondrial DNA control region of the great cats.

S. O’Brien, W. Johnson, E. Eizirik, 2001, Mitochondrion.

[Paternity assignment of giant panda by microsatellite genotyping].

S. O’Brien, F. Shen, V. David, 2003, Yi chuan = Hereditas.

Proceedings in Phylogeography and Genetic Ancestry of Tigers (Panthera tigris) in China and Across Their Range

James L. D. Smith, S. O’Brien, W. Johnson, 2006 .

Does genetic introgression improve female reproductive performance? A test on the endangered Florida panther

S. O’Brien, B. Bolker, W. Johnson, 2011, Oecologia.

A rhesus macaque radiation hybrid map and comparative analysis with the human genome.

Richa Agarwala, Alejandro A Schäffer, Robert Stephens, 2005, Genomics.

Feline Lymphomas: Immunological and Cytochemical Characterization1

S. O’Brien, J. Abkowitz, J. Ihle, 2006 .

Development of MHC-Linked Microsatellite Markers in the Domestic Cat and Their Use to Evaluate MHC Diversity in Domestic Cats, Cheetahs, and Gir Lions.

S. O’Brien, M. Menotti-Raymond, V. David, 2014, The Journal of heredity.

High levels of atmospheric carbon dioxide necessary for the termination of global glaciation

S. O’Brien, W. Murphy, M. Springer, 2022 .

Immunologic profile of highly exposed yet HIV type 1-seronegative men.

W. John Boscardin, M. Carrington, S. O’Brien, 2002, AIDS research and human retroviruses.

Influence of seasonal migration on geographic distribution of mitochondrial DNA haplotypes in humpback whales

S. O’Brien, S. O'Brien, J. Calambokidis, 1990, Nature.

Molecular evolution and the role of oxidative stress in the expansion and functional diversification of cytosolic glutathione transferases

S. O’Brien, A. Antunes, W. Johnson, 2010, BMC Evolutionary Biology.

The Genome Russia project: closing the largest remaining omission on the world Genome map

S. O’Brien, V. Brukhin, Taras K. Oleksyk, 2015, GigaScience.

Genome-Wide Evolutionary Analysis of Natural History and Adaptation in the World’s Tigers

James L. D. Smith, S. O’Brien, D. Miquelle, 2018, Current Biology.

AKvr-1, A DOMINANT MURINE LEUKEMIA VIRUS RESTRICTION GENE, SEGREGATES IN LEUKEMIA-PRONE WILD MICE

B. K. Pal, S. O’Brien, S. Rasheed, 1980 .

Chromosome-length genome assemblies and cytogenomic analyses of pangolins reveal remarkable chromosome counts and plasticity

Erez Lieberman Aiden, S. O’Brien, A. Omer, 2023, Chromosome Research.

Isolation and characterization of microsatellite markers in pangolins (Mammalia, Pholidota, Manis spp.)

S. O’Brien, A. Antunes, W. Johnson, 2007 .

A common proviral integration region, fit-1, in T-cell tumors induced by myc-containing feline leukemia viruses.

S. O’Brien, A. Hasegawa, H. Tsujimoto, 1993, Virology.

Gene mapping in the spider monkey (Ateles paniscus chamek).

S. O’Brien, H. Seuánez, G. Alves, 1994, The Journal of heredity.

African horse sickness and African carnivores.

S. O’Brien, S. O'Brien, J. Mcnutt, 1995, Veterinary microbiology.

Developmental changes in pituitary-gonadal function in free-ranging lions (Panthera leo leo) of the Serengeti Plains and Ngorongoro Crater.

C. Packer, S. O’Brien, A. Pusey, 1991, Journal of reproduction and fertility.

Nonpathogenic Lion and Puma Lentiviruses Impart Resistance to Superinfection by Virulent Feline Immunodeficiency Virus

Stephen J O'Brien, Sue VandeWoude, S. O’Brien, 2002, Journal of acquired immune deficiency syndromes.

Intersection of Population Genetics and Species Conservation

S. O’Brien, 1998 .

Are pangolins scapegoats of the COVID‐19 outbreak‐CoV transmission and pathology evidence?

S. O’Brien, S. Choo, A. Antunes, 2020, Conservation Letters.

Patterns of size homoplasy at 10 microsatellite loci in pumas (Puma concolor).

M. Culver, S. O’Brien, M. Menotti-Raymond, 2001, Molecular biology and evolution.

Assignment of the feline α-l-iduronidase gene to chromosome D4

S. O’Brien, R. Desnick, E. Schuchman, 1989 .

The Cheetah's Conservation Controversy

Stephen J. O'Brien, S. O’Brien, 1994, Conservation Biology.

Genomic dispersal of the ets gene family during metazoan evolution.

S. O’Brien, J. Lautenberger, D. Watson, 1992, Oncogene.

Geneticists Converge on Divergent Mammals - an Overview of Comparative Mammalian Genetics

J. Graves, S. O’Brien, 1989 .

DNA recombination and natural selection pressure sustain genetic sequence diversity of the feline MHC class I genes

S. O’Brien, N. Yuhki, 1990, The Journal of experimental medicine.

Draft de novo Genome Assembly of the Elusive Jaguarundi, Puma yagouaroundi

S. O’Brien, A. F. Scott, A. Graphodatsky, 2021, The Journal of heredity.

Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding

Lawrence S. Hon, Tyler H. Garvin, M. Schatz, 2016, PLoS genetics.

SmileFinder: a resampling-based approach to evaluate signatures of selection from genome-wide sets of matching allele frequency data in two or more diploid populations

S. O’Brien, A. Roca, S. Massey, 2015, GigaScience.

Correction: Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding

Lawrence S. Hon, Tyler H. Garvin, M. Schatz, 2016, PLoS genetics.

Cookiecutter: a tool for kmer-based read filtering and extraction

Ekaterina Starostina, Gaik Tamazian, Pavel Dobrynin, 2015, bioRxiv.

Conserved chromosomal positions of dual domains of the ets protooncogene in cats, mice, and humans.

S. O’Brien, W. Nash, W. Nash, 1986, Proceedings of the National Academy of Sciences of the United States of America.

Polymorphisms in the 3′ untranslated region of the IκB/MAD-3 (NFKBI) gene located on chromosome 14

S. O’Brien, D. Glavač, M. Dean, 1994, Human Genetics.

Skeletal muscle deformity and neuronal disorder in Trio exchange factor-deficient mouse embryos.

S. O’Brien, R. Bronson, R. Segal, 2000, Proceedings of the National Academy of Sciences of the United States of America.

Chromosomal localization of satellite DNA sequences among 22 species of felids and canids (Carnivora).

S. O’Brien, R. Wayne, W. Modi, 1988, Cytogenetics and cell genetics.

Chromosomal mapping of beta-globin and albino loci in the domestic cat. A conserved mammalian chromosome group.

S. O’Brien, W. Nash, C. Winkler, 1986, The Journal of heredity.

Commentary: Unbiasing Genome-Based Analyses of Selection: An Example Using Iconic Shark Species

S. O’Brien, M. Stanhope, A. Antunes, 2021, Frontiers in Marine Science.

A tumor necrosis factor-alpha-inducible promoter variant of interferon-gamma accelerates CD4+ T cell depletion in human immunodeficiency virus-1-infected individuals.

J. Margolick, J. Phair, S. O’Brien, 2003, Journal of Infectious Diseases.

The human endonexin II (ENX2) gene is located at 4q28----q32.

S. O’Brien, M. Jaye, H. Seuánez, 1989, Cytogenetics and cell genetics.

Artifacts of the 1.9x feline genome assembly derived from the feline-specific satellite sequence.

S. O’Brien, J. Pontius, 2009, The Journal of heredity.

Databasewhole genome sequence for SNP discovery across domestic cat breeds

J. Mullikin, S. O’Brien, N. Hansen, 2010 .

The promise of comparative genomics in mammals : Genome

J. Graves, S. O’Brien, W. Nash, 1999 .

The Population Origins and Expansion of Feral Cats in Australia.

S. O’Brien, M. Menotti-Raymond, A. Yurchenko, 2016, The Journal of heredity.

Genetic ancestry of the extinct Javan and Bali tigers.

S. O’Brien, D. Macdonald, G. K. Bar-Gal, 2015, The Journal of heredity.

The Genome-Wide Analysis of Carcinoembryonic Antigen Signaling by Colorectal Cancer Cells Using RNA Sequencing

S. O’Brien, Alexander A. Shishkin, I. Evsyukov, 2016, PloS one.

Genetic markers for oncogenes, growth factors, and cystic fibrosis.

M. Drumm, M. Iannuzzi, S. O’Brien, 1989, Haematology and blood transfusion.

Two-dimensional protein electrophoresis in phylogenetic studies.

S. O’Brien, D. Goldman, 1993, Methods in enzymology.

Bvr-1, a restriction locus of a type C RNA virus in the feline cellular genome: identification, location, and phenotypic characterization in cat X mouse somatic cell hybrids.

S. O’Brien, 1976, Proceedings of the National Academy of Sciences of the United States of America.

Phylogeographic patterns of feline immunodeficiency virus genetic diversity in the domestic cat.

S. O’Brien, D. Macdonald, E. Brown, 1998, Virology.

Assignment of the cat immunoglobulin heavy chain genes IGHM and IGHG to chromosome B3q26 and T cell receptor chain gene TCRG to A2q12-->q13 by fluorescence in situ hybridization.

S. O’Brien, H. Satoh, A. Hasegawa, 1997, Cytogenetics and Cell Genetics.

Development and characterization of microsatellite loci in the endangered oyster mussel Epioblasma capsaeformis (Bivalvia: Unionidae)

Nathan A. Johnson, Jess W. Jones, M. Culver, 2004 .

Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication

Bronwen L. Aken, C. Alkan, S. Searle, 2014, Proceedings of the National Academy of Sciences.

Multistage genomewide association study identifies a locus at 1q41 associated with rate of HIV-1 disease progression to clinical AIDS.

J. Goedert, J. Margolick, S. O’Brien, 2010, Journal of Infectious Diseases.

Defining and Mapping Mammalian Coat Pattern Genes: Multiple Genomic Regions Implicated in Domestic Cat Stripes and Spots

A. Schäffer, S. O’Brien, K. Narfström, 2010, Genetics.

Evolution of CRISPs associated with toxicoferan-reptilian venom and mammalian reproduction.

S. O’Brien, A. Antunes, W. Johnson, 2012, Molecular biology and evolution.

Genetic ancestry of the extinct Javan and Bali tigers.

S. O’Brien, D. Macdonald, G. K. Bar-Gal, 2015, Journal of Heredity.

Giant Pandas: Analysis of demographic and genetic trends for developing a captive breeding masterplan for the giant panda

S. O’Brien, He-min Zhang, V. David, 2006 .

Genomic legacy of the African cheetah, Acinonyx jubatus

M. Diekhans, Jun Wang, S. O’Brien, 2015, Genome Biology.

The fishes of Genome 10K.

D. Haussler, S. O’Brien, B. Venkatesh, 2012, Marine genomics.

Every genome sequence needs a good map.

S. O’Brien, J. Pontius, H. Lewin, 2009, Genome research.

Precision nomenclature for the new genomics

Stephen J O'Brien, Harris A Lewin, Jennifer A Marshall Graves, 2019, GigaScience.

Evaluation of nonviral risk factors for nasopharyngeal carcinoma in a high‐risk population of Southern China

S. O’Brien, C. Winkler, Xiuchan Guo, 2009, International journal of cancer.

Stewardship of human biospecimens, DNA, genotype, and clinical data in the GWAS era.

S. O’Brien, 2009, Annual review of genomics and human genetics.

In the Light of Evolution III: Two Centuries of Darwin Sackler Colloquium: From wild animals to domestic pets, an evolutionary view of domestication

S. O’Brien, C. Driscoll, Daniel D. MacDonald, 2009 .

Automated Single-Strand Conformation Polymorphism Reveals Low Diversity of a Major Histocompatibility Complex Class II Gene in the Threatened New Zealand Sea Lion

S. O’Brien, N. Yuhki, G. Lento, 2003 .

The genomics generation

S. O’Brien, 1993, Current Biology.

A suite of genetic markers useful in assessing wildcat (Felis silvestris ssp.)-domestic cat (Felis silvestris catus) admixture.

S. O’Brien, D. Macdonald, C. Driscoll, 2011, The Journal of heredity.

Guidelines for Naming Nonprimate APOBEC3 Genes and Proteins

S. O’Brien, M. Malim, M. Emerman, 2008, Journal of Virology.

A population-based study to investigate host genetic factors associated with hepatitis B infection and pathogenesis in the Chinese population

S. O’Brien, C. Winkler, P. An, 2008, BMC infectious diseases.