C. Landry

发表

Deep transcriptome annotation enables the discovery and functional characterization of cryptic small proteins

Michelle S. Scott, Mylène Brunelle, Jean-François Lucier, 2017, eLife.

A genome-wide view of the spectrum of spontaneous mutations in yeast

W. J. Dickinson, M. Lynch, D. Hartl, 2008, Proceedings of the National Academy of Sciences.

beditor: A Computational Workflow for Designing Libraries of Guide RNAs for CRISPR-Mediated Base Editing

C. Landry, Rohan Dandage, Philippe C. Després, 2019, genetics.

The role of structural pleiotropy and regulatory evolution in the retention of heteromers of paralogs

Isabelle Gagnon-Arsenault, C. Landry, Nozomu Yachie, 2019, bioRxiv.

The role of structural pleiotropy and regulatory evolution in the retention of heteromers of paralogs

Isabelle Gagnon-Arsenault, C. Landry, Nozomu Yachie, 2019, bioRxiv.

Turnover of protein phosphorylation evolving under stabilizing selection

Alan M. Moses, Luca Freschi, Christian R. Landry, 2014, Front. Genet..

Yeasts from temperate forests

G. Bell, C. Landry, R. Dimitrov, 2022, Yeast.

Exploring the northern limit of the distribution of Saccharomyces cerevisiae and Saccharomyces paradoxus in North America.

Jean-Baptiste Leducq, Christian R Landry, C. Landry, 2014, FEMS yeast research.

Local climatic adaptation in a widespread microorganism

G. Bell, C. Landry, A. K. Dubé, 2014, Proceedings of the Royal Society B: Biological Sciences.

An in Vivo Map of the Yeast Protein Interactome

C. Landry, H. Bussey, S. Michnick, 2008, Science.

Molecular mechanisms of paralogous compensation and the robustness of cellular networks.

C. Landry, A. DeLuna, Diana Ascencio, 2014, Journal of experimental zoology. Part B, Molecular and developmental evolution.

C. Landry, Johan Hallin, Rohan Dandage, 2020, Evolutionary applications.

Paralog dependency indirectly affects the robustness of human cells

C. Landry, Rohan Dandage, 2019, bioRxiv.

Paralog dependency indirectly affects the robustness of human cells

C. Landry, Rohan Dandage, 2019, Molecular systems biology.

Gene duplication can impart fragility, not robustness, in the yeast protein interaction network

Isabelle Gagnon-Arsenault, C. Landry, Diana Ascencio, 2017, Science.

Multi-scale perturbations of protein interactomes reveal their mechanisms of regulation, robustness and insights into genotype-phenotype maps.

C. Landry, Guillaume Diss, H. Vignaud, 2016, Briefings in functional genomics.

A systematic approach for the genetic dissection of protein complexes in living cells.

Isabelle Gagnon-Arsenault, Guillaume Diss, Christian R Landry, 2013, Cell reports.

The yeast galactose network as a quantitative model for cellular memory.

Scott A. Rifkin, C. Landry, S. Rifkin, 2015, Molecular bioSystems.

Turnover of ribosome-associated transcripts from de novo ORFs produces gene-like characteristics available for de novo gene emergence in wild yeast populations

Isabelle Gagnon-Arsenault, C. Landry, O. Namy, 2019, Genome research.

Molecular characterization of the evolution of phagosomes

C. Landry, S. Michnick, P. Thibault, 2010, Molecular systems biology.

Transcriptome sequences spanning key developmental states as a resource for the study of the cestode Schistocephalus solidus, a threespine stickleback parasite

C. Landry, I. Barber, F. Hebert, 2016, GigaScience.

Mapping Gene-Microbe Interactions: Insights from Functional Genomics Co-culture Experiments between Saccharomyces cerevisiae and Pseudomonas spp

C. Landry, M. Filteau, G. N’guyen, 2020, bioRxiv.

Hybridization is a recurrent evolutionary stimulus in wild yeast speciation

C. Landry, Chris Eberlein, A. Fijarczyk, 2019, Nature Communications.

Weak functional constraints on phosphoproteomes.

C. Landry, S. Michnick, E. Levy, 2009, Trends in genetics : TIG.

Genome-wide Protein-protein Interaction Screening by Protein-fragment Complementation Assay (PCA) in Living Cells

C. Landry, A. K. Dubé, Jean-Baptiste Leducq, 2015, Journal of visualized experiments : JoVE.

Genetic Properties Influencing the Evolvability of Gene Expression

Scott A. Rifkin, W. J. Dickinson, D. Hartl, 2007, Science.

BUBR1 Pseudokinase Domain Promotes Kinetochore PP2A-B56 Recruitment, Spindle Checkpoint Silencing, and Chromosome Alignment.

Christian R. Landry, Philippe Thebault, C. Landry, 2020, Cell reports.

Systematic identification of signal integration by protein kinase A

Francisco Torres-Quiroz, Nicolas Bisson, Isabelle Gagnon-Arsenault, 2015, Proceedings of the National Academy of Sciences.

The genomics of wild yeast populations sheds light on the domestication of man's best (micro) friend

C. Landry, Chris Eberlein, Jean-Baptiste Leducq, 2015, Molecular ecology.

Genome-wide scan reveals that genetic variation for transcriptional plasticity in yeast is biased towards multi-copy and dispensable genes.

Duccio Cavalieri, Julia Oh, Christian R Landry, 2006, Gene.

Frequent Assembly of Chimeric Complexes in the Protein Interaction Network of an Interspecies Yeast Hybrid

Isabelle Gagnon-Arsenault, C. Landry, L. Foster, 2020, bioRxiv.

A toolkit of protein-fragment complementation assays for studying and dissecting large-scale and dynamic protein-protein interactions in living cells.

C. Landry, S. Michnick, Vincent Messier, 2010, Methods in enzymology.

Evidence for the Robustness of Protein Complexes to Inter-Species Hybridization

Alexandre K. Dubé, Christian R. Landry, Isabelle Gagnon-Arsenault, 2012, PLoS genetics.

Protein-fragment complementation assays for large-scale analysis, functional dissection and dynamic studies of protein-protein interactions in living cells.

C. Landry, S. Michnick, Vincent Messier, 2011, Methods in molecular biology.

Protein abundance is key to distinguish promiscuous from functional phosphorylation based on evolutionary information

Emmanuel D Levy, Christian R Landry, Stephen W Michnick, 2012, Philosophical Transactions of the Royal Society B: Biological Sciences.

Protein context shapes the specificity of domain-peptide interactions in vivo

C. Landry, Jean-Philippe Lambert, G. Gish, 2020 .

The specificity of SRC Homology 3 (SH3) domain interactions is modulated by their protein context in vivo

C. Landry, Jean-Philippe Lambert, G. Gish, 2020, bioRxiv.

Asymmetrical dose-responses shape the evolutionary trade-off between antifungal resistance and nutrient use

C. Landry, Philippe C. Després, Angel F. Cisneros, 2021, bioRxiv.

Expression attenuation as a mechanism of robustness to gene duplication in protein complexes

Isabelle Gagnon-Arsenault, C. Landry, A. DeLuna, 2020, bioRxiv.

The genotype-phenotype maps of systems biology and quantitative genetics: distinct and complementary.

Scott A. Rifkin, C. Landry, S. Rifkin, 2012, Advances in experimental medicine and biology.

Systematic perturbation of yeast essential genes using base editing

C. Landry, M. Seki, Philippe C. Després, 2019, bioRxiv.

The high turnover of ribosome-associated transcripts from de novo ORFs produces gene-like characteristics available for de novo gene emergence in wild yeast populations

Isabelle Gagnon-Arsenault, C. Landry, O. Namy, 2018 .

The Last Enzyme of the De Novo Purine Synthesis Pathway 5-aminoimidazole-4-carboxamide Ribonucleotide Formyltransferase/IMP Cyclohydrolase (ATIC) Plays a Central Role in Insulin Signaling and the Golgi/Endosomes Protein Network*

C. Landry, S. Hébert, S. Fortier, 2015, Molecular & Cellular Proteomics.

The parasite Schistocephalus solidus secretes proteins with putative host manipulation functions

C. Landry, L. Foster, Halim Maaroufi, 2020, Parasites & Vectors.

The BUBR1 pseudokinase domain promotes efficient kinetochore PP2A-B56 recruitment to regulate spindle checkpoint silencing and chromosome alignment

C. Landry, Angel F. Cisneros, S. Elowe, 2019, bioRxiv.

The effect of hybridization on transposable element accumulation in an undomesticated fungal species

C. Landry, G. Charron, M. Hénault, 2020, bioRxiv.

The effect of hybridization on transposable element accumulation in an undomesticated fungal species

C. Landry, G. Charron, M. Hénault, 2020, eLife.

Alternative life histories shape brain gene expression profiles in males of the same population

C. Landry, B. Letcher, H. Hofmann, 2005, Proceedings of the Royal Society B: Biological Sciences.

Asymmetrical dose-responses shape the evolutionary trade-off between antifungal resistance and nutrient use

C. Landry, Philippe C. Després, Angel F. Cisneros, 2022, bioRxiv.

Extended Linkers Improve the Detection of Protein-protein Interactions (PPIs) by Dihydrofolate Reductase Protein-fragment Complementation Assay (DHFR PCA) in Living Cells.

Isabelle Gagnon-Arsenault, C. Landry, Philippe C. Després, 2018, Molecular & cellular proteomics : MCP.

1 Key considerations for measuring allelic expression on a genomic scale 1 using high-throughput sequencing 2 3

C. Nusbaum, C. Russ, D. Hartl, 2013 .

RNAseq Analysis Highlights Specific Transcriptome Signatures of Yeast and Mycelial Growth Phases in the Dutch Elm Disease Fungus Ophiostoma novo-ulmi

C. Landry, L. Bernier, J. Laroche, 2015, G3: Genes, Genomes, Genetics.

Ecological and evolutionary genomics of Saccharomyces cerevisiae

D. Hartl, C. Landry, J. Townsend, 2006, Molecular ecology.

The Rapid Evolution of an Ohnolog Contributes to the Ecological Specialization of Incipient Yeast Species

C. Landry, A. K. Dubé, Chris Eberlein, 2017, Molecular biology and evolution.

The calcineurin signaling network evolves via conserved kinase‐phosphatase modules that transcend substrate identity (586.3)

Ruedi Aebersold, Bernd Bodenmiller, Stefanie Wanka, 2014, Molecular cell.

Are long-lived trees poised for evolutionary change? Single locus effects in the evolution of gene expression networks in spruce.

C. Landry, J. MacKay, Jukka-Pekka Verta, 2013, Molecular ecology.

Evolutionary trade-off and mutational bias could favor transcriptional over translational divergence within paralog pairs

C. Landry, Simon Aubé, Lou Nielly-Thibault, 2022, bioRxiv.

Differences Between the Raw Material and the Products of de Novo Gene Birth Can Result from Mutational Biases

C. Landry, Lou Nielly-Thibault, 2019, Genetics.

A systems biology approach to explore the impact of maple tree dormancy release on sap variation and maple syrup quality

C. Landry, N. Martin, M. Filteau, 2018, bioRxiv.

SRC homology 3 domains: multifaceted binding modules.

C. Landry, François J M Chartier, Nicolas Bisson, 2022, Trends in biochemical sciences.

Evolutionary rescue by compensatory mutations is constrained by genomic and environmental backgrounds

Isabelle Gagnon-Arsenault, C. Landry, A. K. Dubé, 2015, Molecular systems biology.

Modulation of the yeast protein interactome in response to DNA damage.

Isabelle Gagnon-Arsenault, C. Landry, Guillaume Diss, 2014, Journal of proteomics.

Perturbing proteomes at single residue resolution using base editing

C. Landry, M. Seki, Philippe C. Després, 2020, Nature Communications.

Exit of spore dormancy transforms the yeast cytoplasm and the solubility of its proteome

C. Landry, L. Foster, Kyung-Mee Moon, 2022 .

Lifestyles shape genome size and gene content in fungal pathogens

C. Landry, R. Hamelin, A. Fijarczyk, 2022, bioRxiv.

Differences between the de novo proteome and its non-functional precursor can result from neutral constraints on its birth process, not necessarily from natural selection alone

C. Landry, Lou Nielly-Thibault, 2018, bioRxiv.

Evolutionary trajectories are contingent on mitonuclear interactions

Isabelle Gagnon-Arsenault, C. Landry, A. K. Dubé, 2022, bioRxiv.

Recent advances in ecological genomics: from phenotypic plasticity to convergent and adaptive evolution and speciation.

C. Landry, N. Aubin-Horth, 2014, Advances in experimental medicine and biology.

The Canadian Fungal Research Network: current challenges and future opportunities.

C. Landry, A. Sellam, L. Cowen, 2020, Canadian journal of microbiology.

Diverse perspectives on interdisciplinarity from Members of the College of the Royal Society of Canada

Eric E. Smith, Sylvie A. Lamoureux, C. Landry, 2020 .

Asymmetrical dose-responses shape the evolutionary trade-off between antifungal resistance and nutrient use

C. Landry, Philippe C. Després, Angel F. Cisneros, 2022, bioRxiv.

Machine learning approach for discrimination of genotypes based on bright-field cellular images

C. Landry, Yutaka Saito, M. Seki, 2021, npj Systems Biology and Applications.

Lifestyles shape genome size and gene content in fungal pathogens

C. Landry, R. Hamelin, A. Fijarczyk, 2022, bioRxiv.

Hybridization drives mitochondrial DNA degeneration and metabolic shift in a species with biparental mitochondrial inheritance

C. Landry, G. Charron, M. Hénault, 2022, bioRxiv.

Epistasis between promoter activity and coding mutations shapes gene evolvability

Isabelle Gagnon-Arsenault, C. Landry, J. Pelletier, 2022, bioRxiv.

Double Selection Enhances the Efficiency of Target-AID and Cas9-Based Genome Editing in Yeast

C. Landry, Philippe C. Després, Nozomu Yachie, 2018, G3: Genes, Genomes, Genetics.

Identifying features of genome evolution to exploit cancer vulnerabilities.

C. Landry, Rohan Dandage, 2021, Cell systems.

MTALTND4, a second protein coded by nd4 impacts mitochondrial bioenergetics

M. Brunet, X. Roucou, C. Landry, 2022, bioRxiv.

Correlation between protein abundance and sequence conservation: what do recent experiments say?

C. Landry, Angel F. Cisneros, Camille Bédard, 2022, Current Opinion in Genetics & Development.

The Dihydrofolate Reductase Protein-Fragment Complementation Assay: A Survival-Selection Assay for Large-Scale Analysis of Protein-Protein Interactions.

C. Landry, S. Michnick, E. Levy, 2016, Cold Spring Harbor protocols.

Epistasis between promoter activity and coding mutations shapes gene evolvability

Isabelle Gagnon-Arsenault, C. Landry, J. Pelletier, 2022, bioRxiv.

Breaking dormancy in spores of budding yeast transforms its cytoplasm and the solubility of its proteome

C. Landry, L. Foster, Kyung-Mee Moon, 2022, bioRxiv.

Chromatin- and Transcription-Related Factors Repress Transcription from within Coding Regions throughout the Saccharomyces cerevisiae Genome

T. Hughes, C. Landry, F. Winston, 2008, PLoS biology.

Lachancea quebecensis sp. nov., a yeast species consistently isolated from tree bark in the Canadian province of Québec.

C. Landry, Joseph Schacherer, G. Charron, 2015, International journal of systematic and evolutionary microbiology.

Major host transitions are modulated through transcriptome‐wide reprogramming events in Schistocephalus solidus, a threespine stickleback parasite

C. Landry, I. Barber, F. Hebert, 2017, Molecular ecology.

Major host transitions are modulated through transcriptome-wide reprograming events in Schistocephalus solidus, a threespine stickleback parasite

C. Landry, I. Barber, F. Hebert, 2016, bioRxiv.

Identification of candidate mimicry proteins involved in parasite-driven phenotypic changes

C. Landry, Mahesh Panchal, I. Barber, 2015, Parasites & Vectors.

Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces

Justin C. Fay, C. Landry, J. Fay, 2022, bioRxiv.

Integrative avenues for exploring the dynamics and evolution of protein interaction networks.

Francisco Torres-Quiroz, Luca Freschi, Guillaume Diss, 2013, Current opinion in biotechnology.

How Perfect Can Protein Interactomes Be?

Emmanuel D. Levy, Stephen W. Michnick, Christian R. Landry, 2009, Science Signaling.

Population genomics reveals structure at the individual, host‐tree scale and persistence of genotypic variants of the undomesticated yeast Saccharomyces paradoxus in a natural woodland

C. Landry, James B. Anderson, Dahlia Kasimer, 2017, Molecular ecology.

Compensatory cis-trans Evolution and the Dysregulation of Gene Expression in Interspecific Hybrids of Drosophila

A. Clark, D. Hartl, C. Landry, 2005, Genetics.

Extracting Insight from Noisy Cellular Networks

C. Landry, S. Michnick, E. Levy, 2013, Cell.

Deep transcriptome annotation suggests that small and large proteins encoded in the same genes often cooperate

Michelle S. Scott, Mylène Brunelle, Jean-François Lucier, 2017, bioRxiv.

Found in translation: functions and evolution of a recently discovered alternative proteome.

X. Roucou, C. Landry, Xiangfu Zhong, 2015, Current opinion in structural biology.

The parasite Schistocephalus solidus secretes 1 proteins with putative host manipulation functions 2 Short title : the secretome of a putative host manipulative parasite 3

C. Landry, L. Foster, Halim Maaroufi, 2021 .

Characterization of Spindle Checkpoint Kinase Mps1 Reveals Domain with Functional and Structural Similarities to Tetratricopeptide Repeat Motifs of Bub1 and BubR1 Checkpoint Kinases*

T. Blundell, C. Landry, L. Freschi, 2011, The Journal of Biological Chemistry.

Systems-level analysis and evolution of the phototransduction network in Drosophila

Jun S. Liu, Cristian I. Castillo-Davis, D. Hartl, 2007, Proceedings of the National Academy of Sciences of the United States of America.

Identification of the fitness determinants of budding yeast on a natural substrate

C. Landry, G. Charron, M. Filteau, 2017, The ISME Journal.

Identification of the fitness determinants of budding yeast on a natural substrate

C. Landry, G. Charron, M. Filteau, 2016, The ISME Journal.

The Genome Sequence of the Jean-Talon Strain, an Archeological Beer Yeast from Québec, Reveals Traces of Adaptation to Specific Brewing Conditions

C. Landry, A. Fijarczyk, G. Charron, 2020, G3.

The genome sequence of the Jean-Talon strain, an archeological tetraploid beer yeast from Québec

C. Landry, A. Fijarczyk, G. Charron, 2020, bioRxiv.

Testing the Genomic Shock Hypothesis Using Transposable Element Expression in Yeast Hybrids

C. Landry, Johan Hallin, M. Hénault, 2021, Frontiers in Fungal Biology.

Key considerations for measuring allelic expression on a genomic scale using high‐throughput sequencing

C. Nusbaum, C. Russ, D. Hartl, 2010, Molecular ecology.

beditor: A computational workflow for designing libraries of guide RNAs for CRISPR base editing

Nozomu Yachie, Philippe Després, Rohan Dandage, 2018, bioRxiv.

Chromosomal variation segregates within incipient species and correlates with reproductive isolation

C. Landry, G. Charron, Jean-Baptiste Leducq, 2014, Molecular ecology.

Perturbing proteomes at single residue resolution using base editing

C. Landry, M. Seki, Philippe C. Després, 2019, Nature Communications.

The Genetic Landscape of Transcriptional Networks in a Combined Haploid/Diploid Plant System

C. Landry, J. MacKay, Jukka-Pekka Verta, 2014, bioRxiv.

Evolutionary biology through the lens of budding yeast comparative genomics

C. Landry, E. Durand, A. Marchant, 2017, Nature Reviews Genetics.

Mitochondrial Recombination Reveals Mito–Mito Epistasis in Yeast

C. Landry, John F. Wolters, G. Charron, 2018, Genetics.

Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production

C. Landry, J. Fay, P. Gonçalves, 2017, Biotechnology for Biofuels.

A collection of barcoded natural isolates of Saccharomyces paradoxus to study microbial evolutionary ecology

Isabelle Gagnon-Arsenault, C. Landry, A. K. Dubé, 2018, MicrobiologyOpen.

Yeast Population Genomics Goes Wild: The Case of Saccharomyces paradoxus

C. Landry, E. Durand, Chris Eberlein, 2017 .

Evidence of Natural Hybridization in Brazilian Wild Lineages of Saccharomyces cerevisiae

C. Landry, C. Rosa, Pedro Almeida, 2016, Genome biology and evolution.

Speciation driven by hybridization and chromosomal plasticity in a wild yeast

G. Bell, C. Landry, Chris Eberlein, 2015, Nature Microbiology.

Metabolic variation in natural populations of wild yeast

G. Bell, C. Landry, A. Burt, 2015, Ecology and evolution.

Evolutionary Trajectories are Contingent on Mitonuclear Interactions

Isabelle Gagnon-Arsenault, C. Landry, A. K. Dubé, 2023, bioRxiv.

Complex Ancestries of Lager-Brewing Hybrids Were Shaped by Standing Variation in the Wild Yeast Saccharomyces eubayanus

C. Landry, C. T. Hittinger, Q. Langdon, 2016, PLoS genetics.

What is needed for next-generation ecological and evolutionary genomics?

Christian R Landry, C. Landry, L. Bernatchez, 2012, Trends in ecology & evolution.

Direct Phosphorylation of SRC Homology 3 Domains by Tyrosine Kinase Receptors Disassembles Ligand-Induced Signaling Networks.

C. Landry, G. Gish, N. Doucet, 2018, Molecular cell.

The neutral rate of whole-genome duplication varies among yeast species and their hybrids

C. Landry, A. Fijarczyk, G. Charron, 2021, Nature Communications.

Molecular and cellular bases of adaptation to a changing environment in microorganisms

C. Landry, Clara Bleuven, 2016, Proceedings of the Royal Society B: Biological Sciences.

Where Do Phosphosites Come from and Where Do They Go after Gene Duplication?

C. Landry, L. Freschi, Guillaume Diss, 2012, International journal of evolutionary biology.

WhereDoPhosphositesComefromand WhereDoTheyGoafter Gene Duplication

C. Landry, L. Freschi, Guillaume Diss, 2012 .

Moving from transcriptional to phospho-evolution: generalizing regulatory evolution?

Alan M. Moses, Alan M Moses, Christian R Landry, 2010, Trends in genetics : TIG.

Spontaneous whole-genome duplication restores fertility in interspecific hybrids

C. Landry, G. Charron, M. Hénault, 2019, Nature Communications.

Hybridization and introgression drive genome evolution of Dutch elm disease pathogens

C. Landry, J. Chapuis, R. Hamelin, 2020, Nature Ecology & Evolution.

Phosphorylation network rewiring by gene duplication

Luca Freschi, Mathieu Courcelles, Pierre Thibault, 2011, Molecular systems biology.

qPCA: a scalable assay to measure the perturbation of protein-protein interactions in living cells.

C. Landry, L. Freschi, A. K. Dubé, 2013, Molecular bioSystems.

The rate of whole-genome duplication can be accelerated by hybridization

C. Landry, A. Fijarczyk, G. Charron, 2020, bioRxiv.

Interspecific hybrids show a reduced adaptive potential under DNA damaging conditions

C. Landry, Carla Bautista, S. Marsit, 2020, bioRxiv.

Mitotic phosphotyrosine network analysis reveals that tyrosine phosphorylation regulates Polo-like kinase 1 (PLK1)

C. Landry, P. Eyers, D. Byrne, 2016, Science Signaling.

Detecting Functional Divergence after Gene Duplication through Evolutionary Changes in Posttranslational Regulatory Sequences

Alan M. Moses, Bob Strome, Christian R. Landry, 2014, PLoS Comput. Biol..

Heterogeneous Mutation Rates and Spectra in Yeast Hybrids

C. Landry, A. Fijarczyk, G. Charron, 2021, bioRxiv.

Heterogeneous mutation rates and spectra within and between species of yeast and their hybrids

C. Landry, A. Fijarczyk, G. Charron, 2021 .

Functional Divergence and Evolutionary Turnover in Mammalian Phosphoproteomes

Luca Freschi, Christian R. Landry, C. Landry, 2014, PLoS genetics.

Genome clashes in hybrids: insights from gene expression

D. Hartl, C. Landry, J. Ranz, 2007, Heredity.

Indel arrays: an affordable alternative for genotyping.

K. Gunderson, C. Landry, C. Queitsch, 2007, The Plant journal : for cell and molecular biology.

Highly efficient CRISPR gene editing in yeast enabled by double selection

Nozomu Yachie, Philippe Després, Alexandre K. Dubé, 2018, bioRxiv.

Cascading transcriptional effects of a naturally occurring frameshift mutation in Saccharomyces cerevisiae

D. Hartl, C. Landry, D. Cavalieri, 2008, Molecular ecology.

Regulation plays a multifaceted role in the retention of gene duplicates

C. Landry, Johan Hallin, 2019, PLoS biology.

Mitochondrial Recombination and Introgression during Speciation by Hybridization

C. Landry, B. Shapiro, G. Charron, 2017, Molecular biology and evolution.

Chromatin regulators shape the genotype–phenotype map

C. Landry, S. Rifkin, 2010, Molecular systems biology.

Systems biology spins off a new model for the study of canalization.

C. Landry, 2009, Trends in ecology & evolution.

Protein context shapes the specificity of SH3 domain-mediated interactions in vivo

C. Landry, Jean-Philippe Lambert, G. Gish, 2021, Nature Communications.

Evolution of Genomic Expression

D. Hartl, C. Landry, B. Lemos, 2007 .

Expression attenuation as a mechanism of robustness against gene duplication

Isabelle Gagnon-Arsenault, C. Landry, A. DeLuna, 2021, Proceedings of the National Academy of Sciences.

Dissection of expression-quantitative trait locus and allele specificity using a haploid/diploid plant system - insights into compensatory evolution of transcriptional regulation within populations.

C. Landry, J. MacKay, Jukka-Pekka Verta, 2016, The New phytologist.

Barcode fusion genetics-protein-fragment complementation assay (BFG-PCA): tools and resources that expand the potential for binary protein interaction discovery

C. Landry, M. Seki, Philippe C. Després, 2021, bioRxiv.

Proteomic Characterization of Phagosomal Membrane Microdomains During Phagolysosome Biogenesis and Evolution*

Nicholas J. Carruthers, C. Landry, G. Lajoie, 2012, Molecular & Cellular Proteomics.

Transcriptional divergence plays a role in the rewiring of protein interaction networks after gene duplication.

Isabelle Gagnon-Arsenault, Guillaume Diss, Samuel Rochette, 2013, Journal of proteomics.

Hybridization is a recurrent evolutionary stimulus in wild yeast speciation

C. Landry, Chris Eberlein, A. Fijarczyk, 2019, Nature Communications.

Purification of Yeast Spores to Investigate Their Dynamics of Activation

C. Landry, Samuel Plante, 2020, Current protocols in microbiology.

Large-scale genetic variation of the symbiosis-required megaplasmid pSymA revealed by comparative genomic analysis of Sinorhizobium meliloti natural strains

C. Landry, D. Cavalieri, A. Becker, 2005, BMC Genomics.

Breaking spore dormancy in budding yeast transforms the cytoplasm and the solubility of the proteome

C. Landry, L. Foster, Samuel Plante, 2023, PLoS biology.

C. Landry, Samuel Plante, 2020, bioRxiv.

A systems biology approach to explore the impact of maple tree dormancy release on sap variation and maple syrup quality

C. Landry, N. Martin, M. Filteau, 2018, bioRxiv.

Feedback regulation between autophagy and PKA

C. Landry, M. Filteau, F. Torres-Quiroz, 2015, Autophagy.

Machine learning approach for discrimination of genotypes based on bright-field cellular images

C. Landry, Yutaka Saito, M. Seki, 2021, NPJ systems biology and applications.

Dissection of the role of a SH3 domain in the evolution of binding preference of paralogous proteins

C. Landry, A. K. Dubé, David Bradley, 2023, bioRxiv.

Competition experiments in a soil microcosm reveal the impact of genetic and biotic factors on natural yeast populations

C. Landry, Philippe C. Després, M. Filteau, 2020, The ISME Journal.

A small protein coded within the mitochondrial canonical gene nd4 regulates mitochondrial bioenergetics

M. Brunet, Jean-François Jacques, X. Roucou, 2023, BMC Biology.

Ecological annotation of genes and genomes through ecological genomics

C. Landry, CHRISTIAN R. LANDRY, NADIA AUBIN‐HORTH, 2007, Molecular ecology.

Protein-Fragment Complementation Assays for Large-Scale Analysis, Functional Dissection, and Spatiotemporal Dynamic Studies of Protein-Protein Interactions in Living Cells.

C. Landry, S. Michnick, E. Levy, 2016, Cold Spring Harbor protocols.

A Cellular Roadmap for the Plant Kingdom

Christian R. Landry, C. Landry, 2011, Science.

Ecological genomics : ecology and the evolution of genes and genomes

C. Landry, N. Aubin‐Horth, 2014 .

Haploid transcriptome analysis reveals allelelic gene expression variants, co-expressed gene groups, and linkages between expression and copy number variation

C. Landry, Isabelle Giguére, J. MacKay, 2011, BMC Proceedings.

Evolutionary trade-off and mutational bias could favor transcriptional over translational divergence within paralog pairs

C. Landry, Simon Aubé, Lou Nielly-Thibault, 2023, bioRxiv.

Yeast proteins do not practice social distancing as species hybridize

C. Landry, Caroline M Berger, 2021, Current Genetics.

Combining the Dihydrofolate Reductase Protein-Fragment Complementation Assay with Gene Deletions to Establish Genotype-to-Phenotype Maps of Protein Complexes and Interaction Networks.

C. Landry, Guillaume Diss, 2016, Cold Spring Harbor protocols.

The genomic landscape of transposable elements in yeast hybrids is shaped by structural variation and genotype-specific modulation of transposition rate

C. Landry, G. Charron, M. Hénault, 2023, bioRxiv.

Signaling Through Cooperation

Emmanuel D Levy, Christian R Landry, Stephen W Michnick, 2010, Science.

Quantification of dynamic protein complexes using Renilla luciferase fragment complementation applied to protein kinase A activities in vivo

C. Landry, S. Michnick, M. Bouvier, 2007, Proceedings of the National Academy of Sciences.

‘Good genes as heterozygosity’: the major histocompatibility complex and mate choice in Atlantic salmon (Salmo salar)

C. Landry, P. Duchesne, L. Bernatchez, 2001, Proceedings of the Royal Society of London. Series B: Biological Sciences.

Dissection of the role of a SH3 domain in the evolution of binding preference of paralogous proteins

C. Landry, A. K. Dubé, David Bradley, 2023, bioRxiv.

Cross-feeding affects the target of resistance evolution to an antifungal drug

C. Landry, A. K. Dubé, A. Fijarczyk, 2023, bioRxiv.

MHC studies in nonmodel vertebrates: what have we learned about natural selection in 15 years?

C. Landry, L. Bernatchez, C. Landry, 2003, Journal of evolutionary biology.

The substrate quality of CK2 target sites has a determinant role on their function and evolution

Isabelle Gagnon-Arsenault, C. Landry, David Bradley, 2023, bioRxiv.

When nuclear‐encoded proteins and mitochondrial RNAs do not get along, species split apart

C. Landry, M. Hénault, 2017, EMBO reports.

Hybridization and introgression drive genome evolution of Dutch elm disease pathogens

C. Landry, J. Chapuis, R. Hamelin, 2020, Nature Ecology & Evolution.

Integrative avenues for exploring the dynamics and evolution of protein interaction networks.

C. Landry, L. Freschi, Jean-Baptiste Leducq, 2013, Current opinion in biotechnology.

C. Landry, S. Fortier, R. Faure, 2015, Molecular & Cellular Proteomics.

What is needed for next-generation ecological and evolutionary genomics?

C. Landry, L. Bernatchez, S. Pavey, 2012, Trends in ecology & evolution.

Cross-feeding affects the target of resistance evolution to an antifungal drug

C. Landry, A. K. Dubé, A. Fijarczyk, 2023, bioRxiv.

The fitness cost of spurious phosphorylation

C. Landry, Rohan Dandage, A. K. Dubé, 2023, bioRxiv.

Extended Linkers Improve the Detection of Protein-protein Interactions (PPIs) by Dihydrofolate Reductase Protein-fragment Complementation Assay (DHFR PCA) in Living Cells*

Isabelle Gagnon-Arsenault, C. Landry, Philippe C. Després, 2017, Molecular & Cellular Proteomics.

Asymmetrical dose responses shape the evolutionary trade-off between antifungal resistance and nutrient use

C. Landry, Philippe C. Després, Angel F. Cisneros, 2022, Nature Ecology & Evolution.

Molecular Dependency Impacts on the Compensating Ability of Paralogs: A Response to Veitia.

C. Landry, Guillaume Diss, 2017, Trends in genetics : TIG.

The calcineurin signaling network evolves via conserved kinase-phosphatase modules that transcend substrate identity.

R. Aebersold, C. Landry, M. Cyert, 2014, Molecular cell.

1 BFG-PCA : tools and resources that expand the potential for binary 2 protein interaction discovery 3 4

C. Landry, Philippe C. Després, Nozomu Yachie, 2021 .

Extended linkers improve the detection of protein-protein interactions (PPIs) by dihydrofolate reductase protein-fragment complementation assay (DHFR PCA) in living cells

Isabelle Gagnon-Arsenault, C. Landry, Philippe C. Després, 2018, Molecular & Cellular Proteomics.

Deep transcriptome annotation enables the discovery and functional characterization of cryptic small proteins

Michelle S. Scott, Mylène Brunelle, Jean-François Lucier, 2017, eLife.

Mutational biases favor complexity increases in protein interaction networks after gene duplication.

C. Landry, Angel F. Cisneros, Lou Nielly-Thibault, 2024, Molecular systems biology.

A role for the putative error-prone polymerase REV1 in DNA damage and antifungal drug resistance in Candida albicans

Isabelle Gagnon-Arsenault, C. Landry, Deeva Uthayakumar, 2024, bioRxiv.

Hybrid adaptation is hampered by Haldane’s sieve

Isabelle Gagnon-Arsenault, C. Landry, Devin P. Bendixsen, 2023, bioRxiv.