J. Lucas

发表

Gene expression signatures diagnose influenza and other symptomatic respiratory viral infections in humans.

L. Carin, Rob Lambkin-Williams, A. Hero, 2009, Cell host & microbe.

Bayesian inference of the number of factors in gene-expression analysis: application to human virus challenge studies

Alfred O. Hero, David B. Dunson, Bo Chen, 2010, BMC Bioinformatics.

High-Dimensional Sparse Factor Modeling: Applications in Gene Expression Genomics

M. West, J. Nevins, C. Carvalho, 2008, Journal of the American Statistical Association.

The Bayesian Elastic Net: Classifying Multi-Task Gene-Expression Data

Lawrence Carin, David E. Carlson, Alfred O. Hero, 2009 .

Bayesian Gaussian Copula Factor Models for Mixed Data

Jared S. Murray, L. Carin, D. Dunson, 2011, Journal of the American Statistical Association.

LATENT PROTEIN TREES

Ricardo Henao, L. Carin, G. Ginsburg, 2011, 1108.2471.

A Bayesian Analysis Strategy for Cross-Study Translation of Gene Expression Biomarkers

M. West, C. Carvalho, J. Lucas, 2009, Statistical applications in genetics and molecular biology.

A Host Transcriptional Signature for Presymptomatic Detection of Infection in Humans Exposed to Influenza H1N1 or H3N2

L. Carin, Rob Lambkin-Williams, A. Hero, 2013, PloS one.

Sticky Hidden Markov Modeling of Comparative Genomic Hybridization

Lawrence Carin, Lan Du, Joseph E. Lucas, 2010, IEEE Transactions on Signal Processing.

High-Dimensional Longitudinal Genomic Data: An analysis used for monitoring viral infections

Alfred O. Hero, David B. Dunson, Lawrence Carin, 2012, IEEE Signal Processing Magazine.

Predicting Viral Infection From High-Dimensional Biomarker Trajectories

L. Carin, D. Dunson, A. Zaas, 2011, Journal of the American Statistical Association.

A pathway-based classification of human breast cancer

Michael L. Gatza, J. Nevins, J. Lucas, 2010, Proceedings of the National Academy of Sciences.

Metabolic network failures in Alzheimer's disease: A biochemical road map

Michael W. Weiner, Shannon L. Risacher, Andrew J. Saykin, 2017, Alzheimer's & Dementia.

Trans-study projection of genomic biomarkers in analysis of oncogene deregulation and breast cancer

M. West, J. Nevins, D. Merl, 2018, Oxford Handbooks Online.

Diagnosis of Partial Body Radiation Exposure in Mice Using Peripheral Blood Gene Expression Profiles

H. Dressman, J. Nevins, J. Lucas, 2010, PloS one.

Cross-Study Projections of Genomic Biomarkers: An Evaluation in Cancer Genomics

M. West, C. Carvalho, J. Lucas, 2009, PloS one.

A genomic strategy to elucidate modules of oncogenic pathway signaling networks.

Jeffrey T. Chang, M. West, J. Nevins, 2009, Molecular cell.

The Genomic Analysis of Lactic Acidosis and Acidosis Response in Human Cancers

M. West, J. Nevins, M. Dewhirst, 2008, PLoS genetics.

In: Bayesian Inference for Gene Expression and Proteomics,

M. West, J. Nevins, C. Carvalho, 2022 .

Bayesian Joint Analysis of Heterogeneous Data

L. Carin, D. Dunson, J. Lucas, 2012 .

Efficient model-based clustering with coalescents: Application to multiple outcomes using medical records data

Ricardo Henao, J. Lucas, 2016, 1608.03191.

Analysis of High-Dimensional Longitudinal Genomic Data for Monitoring Viral Infection

Ricardo Henao, L. Carin, D. Dunson, 2011 .

Sparse latent factor models with interactions: Analysis of gene expression data

J. Lucas, V. D. Mayrink, 2013, 1312.1818.

A Host-Based RT-PCR Gene Expression Signature to Identify Acute Respiratory Viral Infection

Lawrence Carin, Geoffrey S Ginsburg, Alfred O Hero, 2013, Science Translational Medicine.

Automated, Quantitative Analysis of Histopathological Staining in Nuclei

Joseph E. Lucas, Joseph Geradts, Ricardo Henao, 2014, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

Sex Differences in Cognitive Decline in Subjects with High Likelihood of Mild Cognitive Impairment due to Alzheimer’s disease

N. Samatova, J. Lucas, K. Shpanskaya, 2018, Scientific Reports.

Blood Gene Expression Signatures Predict Invasive Candidiasis

A. Zaas, G. Ginsburg, J. Lucas, 2010, Science Translational Medicine.

Targeted metabolomics and medication classification data from participants in the ADNI1 cohort

Gabi Kastenmüller, Shannon L Risacher, Andrew J Saykin, 2017, Scientific Data.

Statistical Applications in Genetics and Molecular Biology

M. West, C. Carvalho, J. Lucas, 2009 .

Gene Expression-Based Classifiers Identify Staphylococcus aureus Infection in Mice and Humans

S. Kingsmore, A. Zaas, C. Woods, 2013, PloS one.

Tie2+ Bone Marrow Endothelial Cells Regulate Hematopoietic Stem Cell Regeneration Following Radiation Injury

J. Lucas, D. Kirsch, J. Chute, 2013, Stem cells.

ACLY and ACC1 Regulate Hypoxia-Induced Apoptosis by Modulating ETV4 via α-ketoglutarate

J. Lucas, D. Cyr, S. Murphy, 2015, PLoS genetics.

Bayesian Modeling of Space-Time Properties of Infectious Disease in a College Student Population

L. Carin, D. Dunson, A. Zaas, 2013 .

Nasopharyngeal Protein Biomarkers of Acute Respiratory Virus Infection

Ricardo Henao, Rob Lambkin-Williams, A. Hero, 2017, EBioMedicine.

Cancer Genomics by Jointly Analysing Aneuploidy and Gene Expression

J. Lucas, Lingling Zheng, 2018 .

Biological pathway selection through Bayesian integrative modeling

H. Dressman, J. Lucas, J. Chute, 2014, Statistical applications in genetics and molecular biology.

Aspirin exposure reveals novel genes associated with platelet function and cardiovascular events.

W. Kraus, G. Ginsburg, J. Lucas, 2013, Journal of the American College of Cardiology.

An electronic health record based model predicts statin adherence, LDL cholesterol, and cardiovascular disease in the United States Military Health System

J. Lucas, D. Voora, Taylor C Bazemore, 2017, PloS one.

Characterization of Serum Proteins Associated with IL28B Genotype among Patients with Chronic Hepatitis C

J. Lucas, D. Cyr, M. A. Moseley, 2011, PloS one.

Plasma proteomics of patients with non-valvular atrial fibrillation on chronic anti-coagulation with warfarin or a direct factor Xa inhibitor

J. Lucas, D. Cyr, R. Becker, 2012, Thrombosis and Haemostasis.

Bayesian factor models for the detection of coherent patterns in gene expression data

J. Lucas, V. D. Mayrink, 2015 .

Genomic analysis of response to lactic acidosis in human cancers

M. West, J. Nevins, M. Dewhirst, 2008 .

Metabolomic signature as a predictor of liver disease events in patients with HIV/HCV co-infection.

Laura G. Dubois, J. Lucas, M. A. Moseley, 2020, The Journal of infectious diseases.

A Translatable Predictor of Human Radiation Exposure

H. Dressman, J. Lucas, R. Terbrueggen, 2014, PloS one.

Correction: Dusp3 and Psme3 Are Associated with Murine Susceptibility to Staphylococcus aureus Infection and Human Sepsis

Eric P. Skaar, C. Woods, J. Lucas, 2014, PLoS Pathogens.

Dusp3 and Psme3 Are Associated with Murine Susceptibility to Staphylococcus aureus Infection and Human Sepsis

C. Woods, J. Lucas, D. Cyr, 2014, PLoS pathogens.

Bayesian modeling of temporal properties of infectious disease in a college student population

David B. Dunson, Lawrence Carin, Geoffrey S. Ginsburg, 2014 .

Identification of Altered Metabolomic Profiles Following a Panchakarma-based Ayurvedic Intervention in Healthy Subjects: The Self-Directed Biological Transformation Initiative (SBTI)

E. Schadt, J. Lucas, S. Peterson, 2016, Scientific Reports.

Host gene expression classifiers diagnose acute respiratory illness etiology

Lawrence Carin, Marshall Nichols, Anna Mazur, 2016, Science Translational Medicine.

Latent Factor Analysis to Discover Pathway-Associated Putative Segmental Aneuploidies in Human Cancers

Joseph E. Lucas, Hsiu-Ni Kung, Jen-Tsan A. Chi, 2010, PLoS Comput. Biol..

Functional interaction between responses to lactic acidosis and hypoxia regulates genomic transcriptional outputs.

Jianli Wu, J. Lucas, J. Chi, 2012, Cancer research.

A Network of Substrates of the E3 Ubiquitin Ligases MDM2 and HUWE1 Control Apoptosis Independently of p53

Ricardo Henao, M. Dewhirst, J. Lucas, 2013, Science Signaling.

A Network of Substrates of the E3 Ubiquitin Ligases MDM2 and HUWE1 Control Apoptosis Independently of p53

Ricardo Henao, M. Dewhirst, J. Lucas, 2013, Science Signaling.

SIGNATURE: A workbench for gene expression signature analysis

William T. Barry, Joseph E. Lucas, Jeffrey T. Chang, 2011, BMC Bioinformatics.

Detection of Viruses Via Statistical Gene Expression Analysis

Alfred O. Hero, Lawrence Carin, David E. Carlson, 2011, IEEE Transactions on Biomedical Engineering.

Patient Clustering with Uncoded Text in Electronic Medical Records

Lawrence Carin, Joseph E. Lucas, Ricardo Henao, 2013, AMIA.

Comparing reference-based RNA-Seq mapping methods for non-human primate data

Marshall Nichols, Geoffrey S Ginsburg, G. Ginsburg, 2014, BMC Genomics.

Clinical and Biological Relevance of Genomic Heterogeneity in Chronic Lymphocytic Leukemia

J. Lucas, D. Friedman, J. Weinberg, 2013, PloS one.

Time-dependent changes in non-COX-1-dependent platelet function with daily aspirin therapy

G. Ginsburg, J. Lucas, D. Voora, 2012, Journal of Thrombosis and Thrombolysis.

Uncover Cancer Genomics by Jointly Analysing Aneuploidy and Gene Expression

J. Lucas, Lingling Zheng, Lingling Zheng, 2012 .

Sparse Statistical Modelling in Gene Expression Genomics

Carlos M. Carvalho, Quanli Wang, Andrea Bild, 2006 .

Metaprotein expression modeling for label-free quantitative proteomics

Keyur Patel, Joseph E. Lucas, Francisco Dieguez, 2012, BMC Bioinformatics.

A flexible statistical model for alignment of label-free proteomics data – incorporating ion mobility and product ion information

Ricardo Henao, J. Lucas, M. A. Moseley, 2013, BMC Bioinformatics.

Hierarchical factor modeling of proteomics data

Lawrence Carin, Joseph E. Lucas, Ricardo Henao, 2012, 2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).

Development of a novel preclinical model of pneumococcal pneumonia in nonhuman primates.

A. Zaas, C. Woods, G. Ginsburg, 2014, American journal of respiratory cell and molecular biology.

Bayesian joint analysis of heterogeneous genomics data

Lawrence Carin, Priyadip Ray, Joseph E. Lucas, 2014, Bioinform..

Electronic Health Record Analysis via Deep Poisson Factor Models

Lawrence Carin, James Lu, Joseph E. Lucas, 2016, J. Mach. Learn. Res..

Gene Expression Profiles Link Respiratory Viral Infection, Platelet Response to Aspirin, and Acute Myocardial Infarction

W. Kraus, A. Zaas, C. Woods, 2015, PloS one.

Abstract 16293: A Whole Blood RNA Signature Accurately Classifies Multiple Measures of Platelet Function on Aspirin in Healthy Volunteers and Highlights a Common Underlying Pathway

G. Ginsburg, J. Lucas, D. Voora, 2010 .

Comparing reference-based RNA-Seq mapping methods for non-human primate data

G. Ginsburg, J. Lucas, T. Burke, 2014, BMC Genomics.

A comparison of models for predicting early hospital readmissions

Joseph Futoma, Jonathan Morris, Joseph Lucas, 2015, J. Biomed. Informatics.

BFRM : Software for Bayesian Factor Regression Models

Carlos M. Carvalho, Quanli Wang, Mike West, 2007 .

Sex Differences in Cognitive Decline in Subjects with High Likelihood of Mild Cognitive Impairment due to Alzheimer’s disease

N. Samatova, J. Lucas, K. Shpanskaya, 2018, Scientific Reports.

Multiplex protein analysis to determine fibrosis stage and progression in patients with chronic hepatitis C.

J. Lucas, W. Irving, I. Guha, 2014, Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association.

A Multitask Point Process Predictive Model

Vinayak A. Rao, Lawrence Carin, Wenzhao Lian, 2015, ICML.

Response: Improving Development of the Molecular Signature for Diagnosis of Acute Respiratory Viral Infections

L. Carin, A. Hero, A. Zaas, 2010 .

Genome‐wide association analysis of clinical vs. nonclinical origin provides insights into Saccharomyces cerevisiae pathogenesis

J. Lucas, D. R. Georgianna, J. Lucas, 2011, Molecular ecology.

Statistical Estimation of Statistical Mechanical Models: Helix-Coil Theory and Peptide Helicity Prediction

Joseph E. Lucas, Scott C. Schmidler, Terrence G. Oas, 2007, J. Comput. Biol..

A genomic strategy to elucidate modules of oncogenic pathway signaling networks.

Jeffrey T. Chang, Michael L. Gatza, M. West, 2009, Molecular cell.

Identification of Altered Metabolomic Profiles Following a Panchakarma-based Ayurvedic Intervention in Healthy Subjects: The Self-Directed Biological Transformation Initiative (SBTI)

J. Lucas, M. Moseley, Lisa St. John-Williams, 2016, Scientific Reports.