Haiyuan Yu
发表
Sean R. Collins,
M. Gerstein,
E. O’Shea,
2006,
Nature.
M. Gerstein,
S. Teichmann,
Haiyuan Yu,
2004,
Nature.
Haiyuan Yu,
Alberto Paccanaro,
T. Nepusz,
2012,
Nature Methods.
M. Gerstein,
M. Vidal,
Haiyuan Yu,
2004,
Genome research.
M. Gerstein,
A. Emili,
N. Krogan,
2003,
Science.
M. Gerstein,
A. Paccanaro,
Haiyuan Yu,
2005
.
M. Gerstein,
A. Paccanaro,
Haiyuan Yu,
2005,
Genome research.
A. Barabasi,
T. Moore,
Julie M. Sahalie,
2008,
Science.
Haiyuan Yu,
N. Gulbahce,
Xiujuan Wang,
2011,
Briefings in functional genomics.
M. Gerstein,
Haiyuan Yu,
D. Greenbaum,
2004,
Trends in genetics : TIG.
M. Vidal,
Haiyuan Yu,
K. Venkatesan,
2009,
Molecular systems biology.
M. Gerstein,
J. Karro,
Haiyuan Yu,
2004,
Nucleic acids research.
Haiyuan Yu,
Xiujuan Wang,
Xiaomu Wei,
2012,
Nature Biotechnology.
S. L. Wong,
Lan V. Zhang,
Sharyl L. Wong,
2004,
Science.
Haiyuan Yu,
Xiaomu Wei,
Michael J. Meyer,
2017,
Nature Methods.
M. Vidal,
Haiyuan Yu,
K. Venkatesan,
2009
.
M. Vidal,
Haiyuan Yu,
K. Venkatesan,
2009,
Nature Methods.
M. Gerstein,
Haiyuan Yu,
2006,
Proceedings of the National Academy of Sciences.
M. Gerstein,
Haiyuan Yu,
N. Luscombe,
2003,
Trends in genetics : TIG.
Haiyuan Yu,
P. Stenson,
D. Cooper,
2014,
Human mutation.
Gabor T. Marth,
Uday S. Evani,
H. Kang,
2013,
Science.
K. Roeder,
B. Devlin,
Haiyuan Yu,
2020,
Molecular Autism.
M. Gerstein,
J. Qian,
Haiyuan Yu,
2003,
BMC Genomics.
Mark Gerstein,
Haiyuan Yu,
Michael R. Seringhaus,
2007,
Science.
Mark Gerstein,
Haiyuan Yu,
Lixia Jiang,
2005,
Genes & development.
Julie M. Sahalie,
M. Vidal,
Haiyuan Yu,
2008,
Nature Methods.
M. Vidal,
Haiyuan Yu,
K. Venkatesan,
2009,
Nature Methods.
M. Gerstein,
M. Rubin,
Haiyuan Yu,
2022,
bioRxiv.
Haiyuan Yu,
P. Stenson,
D. Cooper,
2020,
bioRxiv.
Shayne D. Wierbowski,
A. Clark,
Haiyuan Yu,
2019,
Nature Communications.
S. L. Wong,
Lan V. Zhang,
Sharyl L. Wong,
2022
.
A. Regev,
M. Vidal,
Haiyuan Yu,
2008,
Genome research.
Julie M. Sahalie,
M. Vidal,
Haiyuan Yu,
2022
.
A. Clark,
Haiyuan Yu,
A. Grimson,
2013,
American journal of human genetics.
K. Gunsalus,
Julie M. Sahalie,
M. Vidal,
2009,
Nature Methods.
M. Gerstein,
Ning Sun,
Hongyu Zhao,
2003,
Plant Physiology.
David E Hill,
Marc Vidal,
Tong Hao,
2011
.
Haiyuan Yu,
Siqi Liang,
Robert Fragoza,
2018,
Current opinion in systems biology.
Matthew Mort,
Peter D. Stenson,
Xiaomu Wei,
2014,
PLoS genetics.
K. Roeder,
L. Klei,
B. Devlin,
2018,
Nature Genetics.
Haiyuan Yu,
P. Stenson,
D. Cooper,
2017,
Genome Biology.
Minoru Yoshida,
Yu Xia,
Frederick P. Roth,
2016,
Cell.
Haiyuan Yu,
M. Wiedmann,
R. Orsi,
2014,
Front. Cell. Infect. Microbiol..
Mark Gerstein,
Haiyuan Yu,
Paul Bertone,
2006,
Genes & development.
Mark Gerstein,
Haiyuan Yu,
Michael Snyder,
2006,
Nucleic acids research.
M. Gerstein,
M. Vidal,
Haiyuan Yu,
2004
.
, and Protein – DNA Regulogs Annotation Transfer Between Genomes : Protein – Protein Interologs data
M. Gerstein,
M. Vidal,
Haiyuan Yu,
2004
.
Mark Gerstein,
Dov Greenbaum,
Yu Xia,
2003,
Annual review of biochemistry.
M. Gerstein,
V. Trifonov,
Haiyuan Yu,
2006,
Genome Biology.
Jason A. Papin,
Roger L. Chang,
Haiyuan Yu,
2016,
Molecular bioSystems.
M. Gerstein,
Haiyuan Yu,
W. Krebs,
2002
.
Shayne D. Wierbowski,
Haiyuan Yu,
Zhengdong D. Zhang,
2020,
Nature Metabolism.
Gary D Bader,
Shayne D. Wierbowski,
Graham L. Cromar,
2020,
Cell systems.
Haiyuan Yu,
S. Zhang,
Jin Liang,
2019,
Molecular & Cellular Proteomics.
Haiyuan Yu,
L. Mao,
Jun Pan,
2019,
OncoTargets and therapy.
Ethan J. Sanford,
Haiyuan Yu,
M. Smolka,
2019,
bioRxiv.
M. Gerstein,
M. Rubin,
Haiyuan Yu,
2018,
bioRxiv.
Shayne D. Wierbowski,
Haiyuan Yu,
Xiaomu Wei,
2019,
bioRxiv.
Shayne D. Wierbowski,
M. Vidal,
Haiyuan Yu,
2020,
Proceedings of the National Academy of Sciences.
Shayne D. Wierbowski,
Haiyuan Yu,
F. Cheng,
2022,
Research square.
Haiyuan Yu,
Tuancheng Feng,
Fenghua Hu,
2020,
EMBO reports.
Shayne D. Wierbowski,
M. Vidal,
Haiyuan Yu,
2020
.
Shayne D. Wierbowski,
Haiyuan Yu,
F. Cheng,
2022,
Research square.
Gary D Bader,
Nichollas E. Scott,
Haiyuan Yu,
2017
.
Haiyuan Yu,
Junnian Zheng,
P. Hou,
2022,
Oncogene.
M. Gerstein,
Haiyuan Yu,
D. Engelman,
2004
.
Haiyuan Yu,
T. Hao,
Changyu Fan,
2011,
BMC Genomics.
Haiyuan Yu,
Robert Fragoza,
J. Schimenti,
2020,
bioRxiv.
Ethan J. Sanford,
J. Christopher Fromme,
Haiyuan Yu,
2020,
bioRxiv.
Gary D Bader,
Shayne D. Wierbowski,
A. Emili,
2018
.
Haiyuan Yu,
K. Yugandhar,
C. Furman,
2021,
Nucleic acids research.
M. Gerstein,
M. Rubin,
Haiyuan Yu,
2022,
bioRxiv.
Haiyuan Yu,
Robert Fragoza,
Tuancheng Feng,
2022,
The Journal of biological chemistry.
Shayne D. Wierbowski,
Haiyuan Yu,
F. Cheng,
2022,
Nature Biotechnology.
Sheng Qian,
Haiyuan Yu,
Siqi Liang,
2019,
bioRxiv.
Haiyuan Yu,
K. Yugandhar,
C. Furman,
2021,
bioRxiv.
Haiyuan Yu,
Li Yao,
A. K. Leung,
2022,
Human molecular genetics.
Haiyuan Yu,
Junnian Zheng,
Zhongwei Li,
2022,
Oncogene.
Mark Gerstein,
Yang Liu,
Yu Xia,
2004,
Quarterly Reviews of Biophysics.
Gary D. Bader,
Gary D Bader,
Somasekar Seshagiri,
2009,
PLoS biology.
Haiyuan Yu,
Kumar Yugandhar,
Shagun Gupta,
2019,
Computational and structural biotechnology journal.
M. Daly,
N. Camp,
Haiyuan Yu,
2018,
Cancer research.
Matthew Mort,
Alberto Paccanaro,
Haiyuan Yu,
2016,
Human mutation.
Haiyuan Yu,
Jishnu Das,
Michael J. Meyer,
2015,
Cell systems.
Mark Gerstein,
Sandra Cohen,
Mark A. Rubin,
2018,
bioRxiv.
M. Gerstein,
Haiyuan Yu,
M. Snyder,
2006
.
Haiyuan Yu,
Wenjie Luo,
Fenghua Hu,
2021,
Life Science Alliance.
Haiyuan Yu,
Kai Xu,
M. Ding,
2018,
Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie.
Haiyuan Yu,
Siqi Liang,
Gary R. Whittaker,
2020,
bioRxiv.
Haiyuan Yu,
F. Cheng,
Yadi Zhou,
2021,
medRxiv.
Integrated network analysis reveals distinct regulatory roles of transcription factors and microRNAs
Haiyuan Yu,
Andrew G Clark,
Andrew Grimson,
2016,
RNA.
Haiyuan Yu,
Jin Liang,
J. Lis,
2022,
Nature Biotechnology.
Haiyuan Yu,
Jin Liang,
J. Lis,
2021,
bioRxiv.
Sebastià Franch-Expósito,
Sergi Castellví-Bel,
Haiyuan Yu,
2016,
bioRxiv.
Shayne D. Wierbowski,
Haiyuan Yu,
Jin Liang,
2019,
Nature Genetics.
Mark Gerstein,
Falk Schubert,
Yu Xia,
2005,
Data Analysis and Visualization in Genomics and Proteomics.
Mark Gerstein,
Valery Trifonov,
Haiyuan Yu,
2007,
PLoS Comput. Biol..
Haiyuan Yu,
Jishnu Das,
Haiyuan Yu,
2012,
BMC Systems Biology.
Beth L. Pruitt,
Deepak Srivastava,
Haiyuan Yu,
2016,
Cell.
Mark Gerstein,
Haiyuan Yu,
Philip M. Kim,
2011,
Genes & development.
Mark Gerstein,
Valery Trifonov,
Haiyuan Yu,
2006,
Bioinform..
Haiyuan Yu,
M. Gerstein,
M. Gerstein,
2005,
Proceedings. 2005 IEEE International Joint Conference on Neural Networks, 2005..
Michael Snyder,
Haiyuan Yu,
Xiaowei Zhu,
2006,
Methods in enzymology.
Mark Gerstein,
Jiang Qian,
Nicholas M. Luscombe,
2003,
Bioinform..
Mark Gerstein,
Yuval Kluger,
Haiyuan Yu,
2003,
BioTechniques.
D. Conrad,
Haiyuan Yu,
Robert Fragoza,
2021,
bioRxiv.
Haiyuan Yu,
Robert Fragoza,
Najla Al-Sweel,
2021,
Nature Communications.
M. Gerstein,
Ning Sun,
Hongyu Zhao,
2003
.
Haiyuan Yu,
Junnian Zheng,
Ziyang Xu,
2021,
Journal of Cancer.
Haiyuan Yu,
Xiujuan Wang,
S. Helfand,
2015,
Genes & development.
Haiyuan Yu,
Kai Xu,
M. Ding,
2018,
Journal of Cancer.
Haiyuan Yu,
Xiujuan Wang,
Bram Thijssen,
2013,
PLoS Comput. Biol..
Sheng Zhang,
Alden King-Yung Leung,
Marcus B. Smolka,
2019,
Molecular & Cellular Proteomics.
Mark Gerstein,
Ronald Jansen,
Gustavo Stolovitzky,
2007,
Bioinform..
Haiyuan Yu,
Ronald Jansen,
Mark Gerstein,
2007
.
A. Barabasi,
Julie M. Sahalie,
A. Vazquez,
2008,
Nature Methods.
Haiyuan Yu,
Paul Dominic B Olinares,
Haiyuan Yu,
2011,
Molecular & Cellular Proteomics.
Ethan J. Sanford,
J. Christopher Fromme,
Haiyuan Yu,
2021,
The EMBO journal.
Xiaomu Wei,
Haiyuan Yu,
Jin Liang,
2017,
bioRxiv.
Haiyuan Yu,
F. Cheng,
Yadi Zhou,
2021,
Alzheimer's research & therapy.
Minoru Yoshida,
Frederick P Roth,
Xiaomu Wei,
2013,
Science Signaling.
Haiyuan Yu,
Jishnu Das,
Haiyuan Yu,
2015,
Molecular cell.
Mark Gerstein,
Nathaniel Echols,
W G Krebs,
2002,
Proteins.
Haiyuan Yu,
Xiujuan Wang,
Michael J. Meyer,
2013,
Bioinform..
Haiyuan Yu,
K. Yugandhar,
Dapeng Xiong,
2021,
Proteomics.
Ethan J. Sanford,
J. Christopher Fromme,
Haiyuan Yu,
2021,
EMBO reports.
Vitor Marcel Faca,
Ethan J. Sanford,
Jennifer Tieu,
2020,
Scientific Reports.
Gary D Bader,
Nichollas E. Scott,
Haiyuan Yu,
2017,
Cell systems.
Gary D Bader,
Nichollas E. Scott,
Haiyuan Yu,
2017
.
Jonathan D. Wren,
Haiyuan Yu,
Siqi Liang,
2020,
Bioinform..
Haiyuan Yu,
Siqi Liang,
Haiyuan Yu,
2019,
bioRxiv.
Shayne D. Wierbowski,
Haiyuan Yu,
F. Cheng,
2022
.
Haiyuan Yu,
Jishnu Das,
Robert Fragoza,
2014,
Molecular bioSystems.
David E Hill,
Marc Vidal,
Laurence Pelletier,
2016,
Molecular systems biology.
Sheng Qian,
Haiyuan Yu,
Siqi Liang,
2019,
PLoS Comput. Biol..
Haiyuan Yu,
Dapeng Xiong,
Qiuye Zhao,
2021,
Current opinion in structural biology.
Shayne D. Wierbowski,
Haiyuan Yu,
S. Lipkin,
2021,
Nature Methods.
Shayne D. Wierbowski,
Haiyuan Yu,
S. Lipkin,
2020
.
Haiyuan Yu,
Zhenyu Li,
Yuanlei Hu,
2000
.
Emil Alexov,
Swagata Pahari,
Siqi Liang,
2020,
International journal of molecular sciences.
Kumar Yugandhar,
Ting-Yi Wang,
Haiyuan Yu,
2019,
Nature Methods.
Haiyuan Yu,
F. Cheng,
Yadi Zhou,
2021,
Alzheimer's Research & Therapy.
Haiyuan Yu,
Jishnu Das,
M. Smolka,
2020,
iScience.
Mark Gerstein,
Martin H. Schultz,
Kevin Y. Yip,
2006,
Bioinform..
Shayne D. Wierbowski,
Haiyuan Yu,
Siqi Liang,
2022,
Current opinion in structural biology.
Florentina Bunea,
Haiyuan Yu,
Jishnu Das,
2015,
BMC Genomics.
Haiyuan Yu,
P. Stenson,
D. Cooper,
2017,
Genome Biology.
Haiyuan Yu,
K. Yugandhar,
Dapeng Xiong,
2021
.
Haiyuan Yu,
Yadi Zhou,
J. Loscalzo,
2023
.
Emil Alexov,
Swagata Pahari,
Haiyuan Yu,
2020,
Bioinform..
A. Barabasi,
T. Moore,
Julie M. Sahalie,
2008,
Science.
Haiyuan Yu,
Michael J. Meyer,
Philip Geske,
2016,
Bioinform..
M. Gerstein,
A. Emili,
N. Krogan,
2009,
Radiology.
Kevin Y. Yip,
H. Kang,
M. Gerstein,
2015
.
Michael R. Seringhaus,
M. Gerstein,
Haiyuan Yu,
2007,
Science.
M. Gerstein,
J. Qian,
Haiyuan Yu,
2001,
Journal of molecular biology.
M. Gerstein,
Haiyuan Yu,
D. Engelman,
2005
.
W G Krebs,
M Gerstein,
M. Gerstein,
2001,
Nucleic acids research.
Haiyuan Yu,
Yu Xia,
Xiaomu Wei,
2022
.
Shayne D. Wierbowski,
Haiyuan Yu,
A. K. Leung,
2023,
bioRxiv.
M. Gerstein,
A. Paccanaro,
Haiyuan Yu,
2006,
Bioinform..
Kaitlyn M. Gayvert,
Haiyuan Yu,
Jishnu Das,
2014,
Cancer informatics.
Kaitlyn M. Gayvert,
M. Wegkamp,
Haiyuan Yu,
2015,
BMC Genomics.
M. Gerstein,
Haiyuan Yu,
N. Luscombe,
2003
.
M. Gerstein,
A. Emili,
N. Krogan,
2003
.
Atina G. Coté,
M. Vidal,
Haiyuan Yu,
2016
.
Shayne D. Wierbowski,
Haiyuan Yu,
Jin Liang,
2020,
Nature Genetics.
Haiyuan Yu,
N. Gulbahce,
Xiujuan Wang,
2011,
Briefings in functional genomics.
Haiyuan Yu,
Sagar R. Shah,
Mauricio I. Paramo,
2023,
Annual review of genetics.
Shayne D. Wierbowski,
Haiyuan Yu,
Siqi Liang,
2018,
Current opinion in systems biology.
M. Gerstein,
A. Paccanaro,
Haiyuan Yu,
2022
.
Julie M. Sahalie,
M. Vidal,
Haiyuan Yu,
2022
.
Julie M. Sahalie,
M. Vidal,
Haiyuan Yu,
2011,
Nature methods.
Haiyuan Yu,
Alberto Paccanaro,
T. Nepusz,
2012,
Nature Methods.
M. Daly,
N. Camp,
Haiyuan Yu,
2018,
Cancer research.
Gary D Bader,
Shayne D. Wierbowski,
Graham L. Cromar,
2020,
Cell systems.
Shayne D. Wierbowski,
Haiyuan Yu,
K. Yugandhar,
2019,
Nature Methods.
Haiyuan Yu,
Alberto Paccanaro,
T. Nepusz,
2012,
Nature Methods.
Haiyuan Yu,
A. Clark,
You Chen,
2022,
Neuron.
Julie M. Sahalie,
Haiyuan Yu,
K. Venkatesan,
2008
.
M. Gerstein,
M. Vidal,
Haiyuan Yu,
2004,
Genome research.
Gabor T. Marth,
Uday S. Evani,
H. Kang,
2013,
Science.
M. Gerstein,
A. Paccanaro,
Haiyuan Yu,
2006,
Bioinform..
Atina G. Coté,
M. Vidal,
Haiyuan Yu,
2016,
Molecular systems biology.