D. Figeys

发表

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

Gary D Bader, M. Tyers, M. Mann, 2002, Nature.

Large-scale mapping of human protein–protein interactions by mass spectrometry

M. Moran, M. Robinson, Y. Ho, 2007, Molecular systems biology.

Peptide-Centric Approaches Provide an Alternative Perspective To Re-Examine Quantitative Proteomic Data.

D. Figeys, Zhibin Ning, Xu Zhang, 2016, Analytical chemistry.

Visualization and Phospholipid Identification (VaLID): online integrated search engine capable of identifying and visualizing glycerophospholipids with given mass

Gary W. Slater, Stephen Fai, Nico Valenzuela, 2012, Bioinform..

Proteomics in 2002: a year of technical development and wide-ranging applications.

D. Figeys, 2003, Analytical chemistry.

Adapting arrays and lab‐on‐a‐chip technology for proteomics

D. Figeys, 2002, Proteomics.

Use of the fluorescent intercalating dyes POPO-3, YOYO-3 and YOYO-1 for ultrasensitive detection of double-stranded DNA separated by capillary electrophoresis with hydroxypropylmethyl cellulose and non-cross-linked polyacrylamide

D. Figeys, N. Dovichi, E. Arriaga, 1994 .

Identification of protein-protein interactions by mass spectrometry coupled techniques.

Daniel Figeys, Fred Elisma, D. Figeys, 2008, Advances in biochemical engineering/biotechnology.

Identification and quantitation of changes in the platelet activating factor family of glycerophospholipids over the course of neuronal differentiation by high-performance liquid chromatography electrospray ionization tandem mass spectrometry.

D. Figeys, M. Ethier, Jeffrey C. Smith, 2007, Analytical chemistry.

Lipidomics era: accomplishments and challenges.

Daniel Figeys, Alexandre P. Blanchard, Fred Elisma, 2010, Mass spectrometry reviews.

Improvement of the quantification accuracy and throughput for phosphoproteome analysis by a pseudo triplex stable isotope dimethyl labeling approach.

Daniel Figeys, Mingliang Ye, Hanfa Zou, 2011, Analytical chemistry.

Using neurolipidomics to identify phospholipid mediators of synaptic (dys)function in Alzheimer's Disease

Stephen Fai, Steffany A. L. Bennett, Daniel Figeys, 2013, Front. Physiol..

Activation of the Cdc42p GTPase by cyclin‐dependent protein kinases in budding yeast

Daniel Figeys, Brenda J Andrews, Dongqing Huang, 2007, The EMBO journal.

Comparison of different search engines using validated MS/MS test datasets

Alexandre V. Podtelejnikov, Daniel Figeys, Paul J. Taylor, 2005 .

RapidAIM: a culture- and metaproteomics-based Rapid Assay of Individual Microbiome responses to drugs

D. Figeys, Zhibin Ning, Xu Zhang, 2020, Microbiome.

An in vitro model maintaining taxon-specific functional activities of the gut microbiome

D. Figeys, Zhibin Ning, Xu Zhang, 2019, Nature Communications.

Metaproteomic and Metabolomic Approaches for Characterizing the Gut Microbiome

D. Figeys, Zhibin Ning, Xu Zhang, 2019, Proteomics.

Studying the dynamics of the gut microbiota using metabolically stable isotopic labeling and metaproteomics

D. Figeys, Zhibin Ning, Xu Zhang, 2020, bioRxiv.

Bottom-Up Proteomics (2013-2015): Keeping up in the Era of Systems Biology.

D. Figeys, Zhibin Ning, Xu Zhang, 2016, Analytical chemistry.

Protein identification by solid phase microextraction—capillary zone electrophoresis—microelectrospray—tandem mass spectrometry

R. Aebersold, J. Yates, D. Figeys, 1996, Nature Biotechnology.

Combining different 'omics' technologies to map and validate protein-protein interactions in humans.

D. Figeys, 2004, Briefings in functional genomics & proteomics.

Missense Mutation in APOC3 within the C-terminal Lipid Binding Domain of Human ApoC-III Results in Impaired Assembly and Secretion of Triacylglycerol-rich Very Low Density Lipoproteins

D. Figeys, W. Jia, Hulping Zhou, 2011, The Journal of Biological Chemistry.

Advancements in top-down proteomics.

D. Figeys, M. Abu-Farha, Zhibin Ning, 2012, Analytical chemistry.

The functional diversity of protein lysine methylation

D. Figeys, S. Lanouette, V. Mongeon, 2014, Molecular systems biology.

Advancing functional and translational microbiome research using meta-omics approaches

D. Figeys, Xu Zhang, Leyuan Li, 2019, Microbiome.

A microfabricated device for rapid protein identification by microelectrospray ion trap mass spectrometry.

R. Aebersold, D. Figeys, D Figeys, 1997, Analytical chemistry.

Nanoflow solvent gradient delivery from a microfabricated device for protein identifications by electrospray ionization mass spectrometry.

R. Aebersold, D. Figeys, D Figeys, 1998, Analytical chemistry.

Systematic determination of ion score cutoffs based on calculated false positive rates: application for identifying ubiquitinated proteins by tandem mass spectrometry.

Daniel Figeys, D. Figeys, Julian Vasilescu, 2008, Journal of mass spectrometry : JMS.

Analytical aspects of proteomics: 2009-2010.

D. Figeys, M. Abu-Farha, Zhibin Ning, 2011, Analytical chemistry.

Fine tuning of proteomic technologies to improve biological findings: advancements in 2011-2013.

D. Figeys, Zhibin Ning, J. Mayne, 2014, Analytical chemistry.

Human Proteinpedia enables sharing of human protein data

Y. L. Ramachandra, Christine A. Miller, J. Bader, 2008, Nature Biotechnology.

Mapping the human protein interactome

D. Figeys, 2008, Cell Research.

Glycoproteomic reactor for human plasma.

D. Figeys, H. Zou, Julian Vasilescu, 2009, Journal of proteome research.

Two‐Dimensional Gel Electrophoresis and Mass Spectrometry for Proteomic Studies: State‐of‐the‐Art

D. Figeys, 2001 .

Proteomics: the basic overview.

D. Figeys, 2005, Methods of biochemical analysis.

Proteomics: the Basic Overview Protein Identification by Mass Spectrometry 20 Hybrid Instruments 26 Bioinformatics for the Identification of Proteins Based on Ms/ms 46 Current Challenges in Proteomics 49 Classical Proteomics 49 Gel-free Analysis: an Alternative Differential Display 50 Fourier Transo

D. Figeys, 2004 .

Two‐Dimensional Gel Electrophoresis and Mass Spectrometry for Proteomic Studies: State‐of‐the‐Art

D. Figeys, 2001 .

An enhanced microfluidic chip coupled to an electrospray Qstar mass spectrometer for protein identification

D. Figeys, Devanand M. Pinto, Y. Ning, 2000, Electrophoresis.

Gelsolin regulates cisplatin sensitivity in human head‐and‐neck cancer

D. Figeys, B. Tsang, M. Abedini, 2014, International journal of cancer.

Large-scale characterization of intact N-glycopeptides using an automated glycoproteomic method.

Daniel Figeys, Mingliang Ye, Hanfa Zou, 2014, Journal of proteomics.

Proteomic analysis of ubiquitinated proteins from human MCF-7 breast cancer cells by immunoaffinity purification and mass spectrometry.

Daniel Figeys, D. Figeys, M. Ethier, 2005, Journal of proteome research.

The proteomic reactor facilitates the analysis of affinity-purified proteins by mass spectrometry: application for identifying ubiquitinated proteins in human cells.

D. Figeys, M. Ethier, Julian Vasilescu, 2007, Journal of proteome research.

Identification of Chromatin-Binding Protein Complexes

D. Figeys, A. Doucet, 2014 .

HysTag—A Novel Proteomic Quantification Tool Applied to Differential Display Analysis of Membrane Proteins From Distinct Areas of Mouse Brain*

Matthias Mann, Daniel Figeys, Jesper V Olsen, 2004, Molecular & Cellular Proteomics.

Myosin Phosphatase Modulates the Cardiac Cell Fate by Regulating the Subcellular Localization of Nkx2.5 in a Wnt/Rho–Associated Protein Kinase–Dependent Pathway

D. Figeys, Jean-Philippe Lambert, Barbora Malecova, 2013, Circulation research.

Activity‐based profiling of the proteasome pathway during hepatitis C virus infection

D. Figeys, Zhibin Ning, S. Yao, 2015, Proteomics.

Microsome-associated lumenal lipid droplets in the regulation of lipoprotein secretion

D. Figeys, Hulping Zhou, Z. Yao, 2013, Current opinion in lipidology.

GRK2 Fine-Tunes Circadian Clock Speed and Entrainment via Transcriptional and Post-translational Control of PERIOD Proteins.

D. Figeys, Cheng-Kang Chiang, Bo Xu, 2015, Cell reports.

A Regulatory Network Involving β‐Catenin, e‐Cadherin, PI3k/Akt, and Slug Balances Self‐Renewal and Differentiation of Human Pluripotent Stem Cells In Response to Wnt Signaling

D. Figeys, S. Bennett, Lisheng Wang, 2015, Stem cells.

An enhanced chemically defined SILAC culture system for quantitative proteomics study of human embryonic stem cells

D. Figeys, Lisheng Wang, Ruijun Tian, 2011, Proteomics.

Exploring the Microbiome-Wide Lysine Acetylation, Succinylation, and Propionylation in Human Gut Microbiota.

D. Figeys, K. Cheng, Zhibin Ning, 2021, Analytical chemistry.

Exploring the microbiome-wide lysine acetylation, succinylation and propionylation in human gut microbiota

D. Figeys, Zhibin Ning, Xu Zhang, 2020 .

iMetaLab Suite: A one‐stop toolset for metaproteomics

Caitlin M. A. Simopoulos, D. Figeys, K. Cheng, 2022, iMeta.

Comprehensive Assessment of Functional Effects of Commonly Used Sugar Substitute Sweeteners on Ex Vivo Human Gut Microbiome

D. Figeys, Zhibin Ning, Xu Zhang, 2022, Microbiology spectrum.

Metaproteomics reveals growth phase-dependent responses of an in vitro gut microbiota to metformin.

D. Figeys, Zhibin Ning, Xu Zhang, 2020, Journal of the American Society for Mass Spectrometry.

Shedding of cancer susceptibility candidate 4 by the convertases PC7/furin unravels a novel secretory protein implicated in cancer progression

D. Figeys, N. Seidah, J. Mayne, 2020, Cell Death & Disease.

Proteome analysis: Biological assay or data archive?

S. Gygi, R. Aebersold, D. Figeys, 1998, Electrophoresis.

Towards an integrated analytical technology for the generation of multidimensional protein expression maps.

S. Gygi, D. Figeys, D. Goodlett, 1998, Journal of protein chemistry.

A charge-suppressing strategy for probing protein methylation.

D. Figeys, Zhibin Ning, J. Mayne, 2016, Chemical communications.

New ammunition for the proteomic reactor: strong anion exchange beads and multiple enzymes enhance protein identification and sequence coverage

D. Figeys, Jean-Philippe Lambert, Weimin Hou, 2010, Analytical and bioanalytical chemistry.

Data-dependent modulation of solid-phase extraction capillary electrophoresis for the analysis of complex peptide and phosphopeptide mixtures by tandem mass spectrometry: application to endothelial nitric oxide synthase.

R. Aebersold, D. Figeys, D. Goodlett, 1999, Analytical chemistry.

Analysis of low-abundance proteins using the proteomic reactor with pH fractionation.

D. Figeys, Jean-Philippe Lambert, Weimin Hou, 2010, Talanta.

FOCUS: PROTEOMICS On-Line Strong Cation Exchange -HPLC-ESI-MS/MS for Protein Identification and Process Optimization

D. Figeys, H. Duewel, T. Bihan, 2011 .

Techniques for the optimization of proteomic strategies based on head column stacking capillary electrophoresis.

D. Figeys, S. Locke, 2000, Analytical chemistry.

Analysis of protein interaction networks using mass spectrometry compatible techniques.

D. Figeys, M. Ethier, Julian Vasilescu, 2006, Analytica chimica acta.

The reproducible acquisition of comparative liquid chromatography/tandem mass spectrometry data from complex biological samples.

Brett G Larsen, Chris Orsi, D. Figeys, 2004, Rapid communications in mass spectrometry : RCM.

Elevated colonic microbiota-associated paucimannosidic and truncated N-glycans in pediatric ulcerative colitis

D. Figeys, Jianjun Li, K. Cheng, 2021, bioRxiv.

Elevated colonic microbiota-associated paucimannosidic and truncated N-glycans in pediatric ulcerative colitis.

D. Figeys, Jianjun Li, Zhibin Ning, 2021, Journal of proteomics.

18O labeling: a tool for proteomics.

D. Figeys, I. Stewart, T. Thomson, 2001, Rapid communications in mass spectrometry : RCM.

Methylmercury can induce Parkinson's-like neurotoxicity similar to 1-methyl-4- phenylpyridinium: a genomic and proteomic analysis on MN9D dopaminergic neuron cells.

D. Figeys, Zhibin Ning, H. Chan, 2015, The Journal of toxicological sciences.

Activation energy of single-stranded DNA moving through cross-linked polyacrylamide gels at 300 V/cm. Effect of temperature on sequencing rate in high-electric-field capillary gel electrophoresis.

D. Figeys, N. Dovichi, E. Arriaga, 1994, Journal of chromatography. A.

PCSK4-null sperm display enhanced protein tyrosine phosphorylation and ADAM2 proteolytic processing during in vitro capacitation.

D. Figeys, Julian Vasilescu, M. Mbikay, 2010, Fertility and sterility.

The precursor to the germ cell-specific PCSK4 proteinase is inefficiently activated in transfected somatic cells: evidence of interaction with the BiP chaperone

D. Figeys, A. Basak, M. Mbikay, 2011, Molecular and Cellular Biochemistry.

Development of a multiplexed microfluidic proteomic reactor and its application for studying protein-protein interactions.

X. D. Hoa, D. Figeys, Jean-Philippe Lambert, 2011, Analytical chemistry.

β‐Estradiol results in a proprotein convertase subtilisin/kexin type 9‐dependent increase in low‐density lipoprotein receptor levels in human hepatic HuH7 cells

D. Figeys, J. Mayne, M. Chrétien, 2015, The FEBS journal.

A New Chemical Probe for Phosphatidylinositol Kinase Activity

D. Figeys, Zhibin Ning, Neda Nasheri, 2014, Chembiochem : a European journal of chemical biology.

Identification of lysophosphatidylcholine (LPC) and platelet activating factor (PAF) from PC12 cells and mouse cortex using liquid chromatography/multi-stage mass spectrometry (LC/MS3).

D. Figeys, M. Ethier, Jeffrey C. Smith, 2008, Rapid communications in mass spectrometry : RCM.

Growth phase-dependent responses of an in vitro gut microbiome to metformin

D. Figeys, Zhibin Ning, Xu Zhang, 2020, bioRxiv.

Proteome profiling reveals regional protein alteration in cerebrum of common marmoset (Callithrix jacchus) exposed to methylmercury.

D. Figeys, Zhibin Ning, Megumi Yamamoto, 2016, Toxicology.

MFG-E8 Is Critical for Embryonic Stem Cell-Mediated T Cell Immunomodulation

D. Figeys, Lisheng Wang, M. Jinushi, 2015, Stem cell reports.

An economic and robust TMT labeling approach for high throughput proteomic and metaproteomic analysis

D. Figeys, Zhibin Ning, Xu Zhang, 2022, bioRxiv.

Mapping the switchboard of cellular biology by mass spectrometry

D. Figeys, 2002 .

RapidAIM 2.0: a high-throughput assay to study functional response of human gut microbiome to xenobiotics

D. Figeys, Zhibin Ning, Xu Zhang, 2022, bioRxiv.

Srf1 Is a Novel Regulator of Phospholipase D Activity and Is Essential to Buffer the Toxic Effects of C16:0 Platelet Activating Factor

D. Figeys, K. Baetz, Jean-Philippe Lambert, 2011, PLoS genetics.

Identification of Flow-dependent Endothelial Nitric-oxide Synthase Phosphorylation Sites by Mass Spectrometry and Regulation of Phosphorylation and Nitric Oxide Production by the Phosphatidylinositol 3-Kinase Inhibitor LY294002*

R. Aebersold, D. Figeys, D. Goodlett, 1999, The Journal of Biological Chemistry.

Differential proteomic analysis of synovial fluid from hip arthroplasty patients with a pseudotumor vs. Periprosthetic osteolysis

D. Figeys, Zhibin Ning, P. Beaulé, 2018, Journal of orthopaedic research : official publication of the Orthopaedic Research Society.

Examining the Effects of an Anti-Salmonella Bacteriophage Preparation, BAFASAL®, on Ex-Vivo Human Gut Microbiome Composition and Function Using a Multi-Omics Approach

D. Figeys, Zhibin Ning, Xu Zhang, 2021, bioRxiv.

Improved Recovery and Identification of Membrane Proteins from Rat Hepatic Cells using a Centrifugal Proteomic Reactor*

D. Figeys, Zhibin Ning, Weimin Hou, 2011, Molecular & Cellular Proteomics.

MetaProClust-MS1: an MS1 Profiling Approach for Large-Scale Microbiome Screening

Caitlin M. A. Simopoulos, D. Figeys, Zhibin Ning, 2022, mSystems.

Microbiome-wide characterization of post-translational 1 modifications 2 Identifying the modification profile from

D. Figeys, K. Cheng, Zhibin Ning, 2019 .

N-glycosylation analysis using the StrOligo algorithm.

D. Figeys, H. Perreault, M. Ethier, 2006, Methods in molecular biology.

Altered intestinal microbiota–host mitochondria crosstalk in new onset Crohn's disease

James Butcher, Mehrdad Hajibabaei, Daniel Figeys, 2016, Nature Communications.

Structural analysis of Atopobium parvulum SufS cysteine desulfurase linked to Crohn's disease

D. Figeys, Zhibin Ning, P. Giguère, 2022, FEBS letters.

Open: Mucosal‐luminal interface proteomics reveals biomarkers of pediatric inflammatory bowel disease‐associated colitis

D. Figeys, Zhibin Ning, Xu Zhang, 2018, The American Journal of Gastroenterology.

Proteomic Analysis of Cerebellum in Common Marmoset Exposed to Methylmercury.

D. Figeys, Zhibin Ning, Megumi Yamamoto, 2015, Toxicological sciences : an official journal of the Society of Toxicology.

Pairing Metagenomics and Metaproteomics to Pinpoint Ecological Niches and Metabolic Essentiality of Microbial Communities

D. Figeys, Yang‐Yu Liu, Leyuan Li, 2022, bioRxiv.

Alterations in neural stem cell quiescence and activation in the 3xTG-AD model of Alzheimer’s Disease

D. Figeys, B. Vanderhyden, R. Slack, 2022, bioRxiv.

Detecting protein-protein interactions/complex components using mass spectrometry coupled techniques.

D. Figeys, Zhibin Ning, Deeptee Seebun, 2014, Methods in molecular biology.

APols-Aided Protein Precipitation: A Rapid Method for Concentrating Proteins for Proteomic Analysis

D. Figeys, Zhibin Ning, Deeptee Seebun, 2014, The Journal of Membrane Biology.

Functional analysis of the missense APOC3 mutation Ala23Thr associated with human hypotriglyceridemia

D. Figeys, Hulping Zhou, Z. Yao, 2010, Journal of Lipid Research.

Associations Between Soluble LDLR and Lipoproteins in a White Cohort and the Effect of PCSK9 Loss-of-Function

D. Figeys, Zhibin Ning, J. Mayne, 2018, The Journal of clinical endocrinology and metabolism.

Assessing the Dark Field of Metaproteome

D. Figeys, K. Cheng, Zhibin Ning, 2022, Analytical chemistry.

Mass spectrometric analysis reveals remnants of host-pathogen molecular interactions at the starch granule surface in wheat endosperm.

D. Figeys, Jeffrey C. Smith, I. Altosaar, 2010, Phytopathology.

MetaLab-MAG: A Metaproteomic Data Analysis Platform for Genome-Level Characterization of Microbiomes from the Metagenome-Assembled Genomes Database

D. Figeys, K. Cheng, Zhibin Ning, 2022, Journal of proteome research.

Targeted lipidomics – advances in profiling lysophosphocholine and platelet‐activating factor second messengers

D. Figeys, Nicolas Valenzuela, Hongbin Xu, 2013, The FEBS journal.

Technological developments in lipidomics.

D. Figeys, F. Elisma, S. Bennett, 2008, Briefings in functional genomics & proteomics.

Quantitative proteomic analysis of Dunaliella salina upon acute arsenate exposure.

D. Figeys, Zhibin Ning, Ya Wang, 2016, Chemosphere.

High sensitivity identification of proteins by electrospray ionization tandem mass spectrometry: Initial com‐ parison between an ion trap mass spectrometer and a triple quadrupole mass spectrometer

R. Aebersold, D. Figeys, 1997, Electrophoresis.

PINK1-mediated phosphorylation of LETM1 regulates mitochondrial calcium transport and protects neurons against mitochondrial stress

David S. Park, D. Figeys, J. Woulfe, 2017, Nature Communications.

A simultaneous identification and quantification strategy for determination of sulfhydryl-containing metabolites in normal- and high-fat diet hamsters using stable isotope labeling combined with LC-MS.

D. Figeys, Kai Cheng, Jia Liu, 2021, Analytica chimica acta.

Assessing the impact of protein extraction methods for human gut metaproteomics.

Zhibin Ning, Xu Zhang, Leyuan Li, 2017, Journal of proteomics.

Molecular Systems Biology 6; Article number 448; doi:10.1038/msb.2010.104 Citation: Molecular Systems Biology 6:448

J. Greenblatt, D. Figeys, K. Baetz, 2022 .

Of proteins and DNA--proteomic role in the field of chromatin research.

D. Figeys, K. Baetz, Jean-Philippe Lambert, 2010, Molecular bioSystems.

Metabolic Reprogramming by Hexosamine Biosynthetic and Golgi N-Glycan Branching Pathways

D. Figeys, J. Dennis, J. Pawling, 2016, Scientific Reports.

Berberine and its structural analogs have differing effects on functional profiles of individual gut microbiomes

D. Figeys, Zhibin Ning, Xu Zhang, 2020, Gut microbes.

Proteomic analysis of ascending colon biopsies from a paediatric inflammatory bowel disease inception cohort identifies protein biomarkers that differentiate Crohn's disease from UC

D. Figeys, Zhibin Ning, Xu Zhang, 2016, Gut.

Profiling Kinase Activity during Hepatitis C Virus Replication Using a Wortmannin Probe.

D. Figeys, Zhibin Ning, Neda Nasheri, 2015, ACS infectious diseases.

Change in conductivity in non-cross-linked polyacrylamide capillary electrophoresis Effects of aging polyacrylamide and buffer composition

D. Figeys, N. Dovichi, 1996 .

Effect of the age of non-cross-linked polyacrylamide on the separation of DNA sequencing samples

D. Figeys, N. Dovichi, 1995 .

Mobility of single-stranded DNA as a function of cross-linker concentration in polyacrylamide capillary gel electrophoresis

D. Figeys, N. Dovichi, 1993 .

Identification of novel lipid droplet factors that regulate lipophagy and cholesterol efflux in macrophage foam cells

D. Figeys, K. Baetz, B. Vanderhyden, 2021, Autophagy.

The Tale of Two Domains

D. Figeys, F. Elisma, M. Abu-Farha, 2008, Molecular & Cellular Proteomics.

Death-associated Protein 4 Binds MST1 and Augments MST1-induced Apoptosis*

D. Figeys, J. Avruch, Yenshou Lin, 2002, The Journal of Biological Chemistry.

Microfabricated modules for sample handling, sample concentration and flow mixing: application to protein analysis by tandem mass spectrometry.

R. Aebersold, D. Figeys, 1999, Journal of biomechanical engineering.

Strategy to design improved proteomic experiments based on statistical analyses of the chemical properties of identified peptides.

D. Figeys, M. Ethier, 2005, Journal of proteome research.

Functional Dissection of the NuA4 Histone Acetyltransferase Reveals Its Role as a Genetic Hub and that Eaf1 Is Essential for Complex Integrity

Jean-Philippe Lambert, Leslie Mitchell, Daniel Figeys, 2008, Molecular and Cellular Biology.

Two-color cell array screen reveals interdependent roles for histone chaperones and a chromatin boundary regulator in histone gene repression.

T. Hughes, J. Greenblatt, D. Figeys, 2009, Molecular cell.

Multiple separations of DNA sequencing fragments with a non-cross-linked polyacrylamide-filled capillary: capillary electrophoresis at 300 V/cm

D. Figeys, N. Dovichi, 1995 .

Spatial and temporal depletion of ions from noncrosslinked denaturing polyacrylamide in capillary electrophoresis

D. Figeys, N. Dovichi, A. Renborg, 1994, Electrophoresis.

Pseudo-coulometric loading in capillary electrophoresis DNA sequencing.

D. Figeys, N. Dovichi, E. Arriaga, 1996, Journal of chromatography. A.

Widespread protein lysine acetylation in gut microbiome and its alterations in patients with Crohn’s disease

Zhibin Ning, Xu Zhang, Krystal Walker, 2020, Nature Communications.

Proteomics and Metaproteomics Add Functional, Taxonomic and Biomass Dimensions to Modeling the Ecosystem at the Mucosal-luminal Interface

Leyuan Li, Daniel Figeys, D. Figeys, 2020, Molecular & Cellular Proteomics.

pepFunk: a tool for peptide-centric functional analysis of metaproteomic human gut microbiome studies.

Xu Zhang, Caitlin M. A. Simopoulos, Zhibin Ning, 2020, Bioinformatics.

pepFunk, a tool for peptide-centric functional analysis in metaproteomic human gut microbiome studies

Caitlin M. A. Simopoulos, Zhibin Ning, Xu Zhang, 2019, bioRxiv.

An autocrine inflammatory forward-feedback loop after chemotherapy withdrawal facilitates the repopulation of drug-resistant breast cancer cells

D. Figeys, D. Allan, Lisheng Wang, 2017, Cell Death & Disease.

Lipin - The bridge between hepatic glycerolipid biosynthesis and lipoprotein metabolism.

D. Figeys, A. Blais, M. Bou Khalil, 2010, Biochimica et biophysica acta.

High throughput solid phase microextraction: A new alternative for analysis of cellular lipidome?

D. Figeys, J. Pawliszyn, Zhibin Ning, 2017, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

Biomarker assay translation from discovery to clinical studies in cancer drug development: quantification of emerging protein biomarkers.

Daniel Figeys, D. Figeys, Jean W. Lee, 2007, Advances in cancer research.

Analysis of human serum phosphopeptidome by a focused database searching strategy.

Jun Zhu, Daniel Figeys, Mingliang Ye, 2013, Journal of proteomics.

Recent developments in mass spectrometry-based quantitative phosphoproteomics.

D. Figeys, Jeffrey C. Smith, 2008, Biochemistry and cell biology = Biochimie et biologie cellulaire.

Proteomics technology in systems biology.

Daniel Figeys, D. Figeys, Jeffrey C. Smith, 2006, Molecular bioSystems.

Mass spectrometry for the study of protein-protein interactions.

M. Moran, D. Figeys, L. McBroom, 2001, Methods.

Discovery of substrates for a SET domain lysine methyltransferase predicted by multistate computational protein design.

Roberto A Chica, Zhibin Ning, Daniel Figeys, 2015, Structure.

Aging Disrupts the Circadian Patterns of Protein Expression in the Murine Hippocampus

D. Figeys, Zhibin Ning, Xu Zhang, 2020, Frontiers in Aging Neuroscience.

Regulation of the VHL/HIF-1 Pathway by DJ-1

David S. Park, Maxime W. C. Rousseaux, D. Figeys, 2014, The Journal of Neuroscience.

A Chemoenzymatic Method for Glycoproteomic N-glycan Type Quantitation.

D. Figeys, Jianjun Li, Zhibin Ning, 2019, Analytical chemistry.

A Chemoenzymatic Method for Glycoproteomic N-glycan Type Quantitation

D. Figeys, Jianjun Li, Zhibin Ning, 2019, bioRxiv.

Early postnatal defects in neurogenesis in the 3xTg mouse model of Alzheimer’s disease

D. Figeys, J. Mayne, R. Slack, 2023, Cell Death & Disease.

Perspective and Guidelines for Metaproteomics in Microbiome Studies.

Xu Zhang, Daniel Figeys, D. Figeys, 2019, Journal of proteome research.

β-Catenin and NF-κB co-activation triggered by TLR3 stimulation facilitates stem cell-like phenotypes in breast cancer

D. Figeys, W. Yang, L. Filion, 2014, Cell Death and Differentiation.

The tryptophan-rich domain of puroindoline is directly associated with the starch granule surface as judged by tryptic shaving and mass spectrometry

D. Figeys, Jeffrey C. Smith, I. Altosaar, 2010 .

Analysis of the subcellular phosphoproteome using a novel phosphoproteomic reactor.

Daniel Figeys, Hanfa Zou, Ruijun Tian, 2010, Journal of proteome research.

Ras Binding Triggers Ubiquitination of the Ras Exchange Factor Ras-GRF2

M. Moran, D. Figeys, Carmen L. de Hoog, 2001, Molecular and Cellular Biology.

Deep Metaproteomics Approach for the Study of Human Microbiomes.

Zhibin Ning, Xu Zhang, Daniel Figeys, 2017, Analytical chemistry.

Advancing functional and translational microbiome research using meta-omics approaches

D. Figeys, Xu Zhang, Leyuan Li, 2019, Microbiome.

Metaproteomics reveals associations between microbiome and intestinal extracellular vesicle proteins in pediatric inflammatory bowel disease

James Butcher, Zhibin Ning, Xu Zhang, 2018, Nature Communications.

A Novel Proteomics Approach for the Discovery of Chromatin-associated Protein Networks*S

D. Figeys, K. Baetz, Jean-Philippe Lambert, 2009, Molecular & Cellular Proteomics.

The Liver Connexin32 Interactome Is a Novel Plasma Membrane-Mitochondrial Signaling Nexus

D. Figeys, S. Bennett, Hulping Zhou, 2013, Journal of proteome research.

Exploring the effects of operational mode and microbial interactions on bacterial community assembly in a one-stage partial-nitritation anammox reactor using integrated multi-omics

D. Figeys, Xu Zhang, Tong Zhang, 2019, Microbiome.

Evaluating live microbiota biobanking using an ex vivo microbiome assay and metaproteomics

D. Figeys, Zhibin Ning, Xu Zhang, 2021, bioRxiv.

MetaLab 2.0 enables accurate post-translational modifications profiling in metaproteomics.

D. Figeys, Zhibin Ning, Xu Zhang, 2020, Journal of the American Society for Mass Spectrometry.

MetaLab 2.0 enables accurate post-translational modifications profiling in metaproteomics

D. Figeys, Zhibin Ning, Xu Zhang, 2020 .

Microbiome-wide characterization of post-translational modifications

D. Figeys, K. Cheng, Zhibin Ning, 2019, bioRxiv.

RapidAIM: a culture- and metaproteomics-based Rapid Assay of Individual Microbiome responses to drugs

D. Figeys, Zhibin Ning, Xu Zhang, 2019, Microbiome.

Evaluating in Vitro Culture Medium of Gut Microbiome with Orthogonal Experimental Design and a Metaproteomics Approach.

James Butcher, Zhibin Ning, Xu Zhang, 2018, Journal of proteome research.

Proteomic and Metaproteomic Approaches to Understand Host-Microbe Interactions.

Zhibin Ning, Xu Zhang, Leyuan Li, 2018, Analytical chemistry.

MetaLab: an automated pipeline for metaproteomic data analysis

D. Figeys, Zhibin Ning, Xu Zhang, 2017, Microbiome.

MetaPro-IQ: a universal metaproteomic approach to studying human and mouse gut microbiota

James Butcher, Zhibin Ning, Xu Zhang, 2016, Microbiome.

Novel approaches to map protein interactions.

D. Figeys, 2003, Current opinion in biotechnology.

A novel whole-cell lysate kinase assay identifies substrates of the p38 MAPK in differentiating myoblasts

A. Gingras, T. Pawson, D. Figeys, 2012, Skeletal Muscle.

MetaProClust-MS1: A tool for clustering metaproteomes using rapid MS1 profiling

Caitlin M. A. Simopoulos, D. Figeys, Zhibin Ning, 2021, bioRxiv.

Multiplexed proteomic reactor for the processing of proteomic samples.

D. Figeys, M. Ethier, Y. Sheng, 2007, Analytical chemistry.

The proteomic reactor: a microfluidic device for processing minute amounts of protein prior to mass spectrometry analysis.

D. Figeys, M. Ethier, H. Duewel, 2006, Journal of proteome research.

Quantitative analysis of SARS-CoV-2 RNA from wastewater solids in communities with low COVID-19 incidence and prevalence

D. Figeys, M. Servos, Xu Zhang, 2020, Water Research.

Rare Cell Proteomic Reactor Applied to Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC)-based Quantitative Proteomics Study of Human Embryonic Stem Cell Differentiation*

Li Li, Daniel Figeys, Ruijun Tian, 2010, Molecular & Cellular Proteomics.

Exploring the Yeast Acetylome Using Functional Genomics

Yolanda T. Chong, D. Figeys, B. Andrews, 2012, Cell.

Proteomics on a chip: Promising developments

D. Figeys, Devanand M. Pinto, D Figeys, 2001, Electrophoresis.

High sensitivity analysis of proteins and peptides by capillary electrophoresis‐tandem mass spectrometry: Recent developments in technology and applications

R. Aebersold, D. Figeys, 1998, Electrophoresis.

Proteogenomic characterization identifies clinically relevant subgroups of intrahepatic cholangiocarcinoma.

D. Figeys, Yongyong Shi, Xu Zhang, 2021, Cancer cell.

A functional ecological network based on metaproteomics responses of individual gut microbiomes to resistant starches

D. Figeys, Zhibin Ning, Xu Zhang, 2020, Computational and structural biotechnology journal.

Metaproteomic responses of in vitro gut microbiomes to resistant starches: the role of resistant starch type and inter-individual variations

D. Figeys, Zhibin Ning, Xu Zhang, 2020, bioRxiv.

Co-targeting Bulk Tumor and CSCs in Clinically Translatable TNBC Patient-Derived Xenografts via Combination Nanotherapy

D. Figeys, T. Alain, Lisheng Wang, 2019, Molecular Cancer Therapeutics.

Electrophoresis combined with novel mass spectrometry techniques: Powerful tools for the analysis of proteins and proteomes

S. Gygi, R. Aebersold, D. Figeys, 1998, Electrophoresis.

Restriction of histone gene transcription to S phase by phosphorylation of a chromatin boundary protein.

D. Figeys, B. Andrews, H. Friesen, 2011, Genes & development.

Regulation of Septin Dynamics by the Saccharomyces cerevisiae Lysine Acetyltransferase NuA4

D. Figeys, K. Baetz, Jean-Philippe Lambert, 2011, PloS one.

An emerging field: Post‐translational modification in microbiome

D. Figeys, Xu Zhang, Haonan Duan, 2022, Proteomics.

MetaPro-IQ: a universal metaproteomic approach to studying human and mouse gut microbiota

D. Figeys, Zhibin Ning, Xu Zhang, 2016, Microbiome.

MealTime-MS: A Machine Learning-Guided Real-Time Mass Spectrometry Analysis for Protein Identification and Efficient Dynamic Exclusion

D. Figeys, Zhibin Ning, M. Lavallée-Adam, 2020, bioRxiv.

MealTime-MS: A Machine Learning-Guided Real-Time Mass Spectrometry Analysis for Protein Identification and Efficient Dynamic Exclusion

Zhibin Ning, Daniel Figeys, Mathieu Lavallée-Adam, 2020, bioRxiv.

Separation and characterization of human microbiomes by metaproteomics

Zhibin Ning, Xu Zhang, Daniel Figeys, 2018, TrAC Trends in Analytical Chemistry.

Quantitative site-specific ADP-ribosylation profiling of DNA-dependent PARPs.

D. Figeys, L. Foster, Zhibin Ning, 2015, DNA repair.

mChIP-KAT-MS, a method to map protein interactions and acetylation sites for lysine acetyltransferases

Jean-Philippe Lambert, Zhibin Ning, Daniel Figeys, 2013, Proceedings of the National Academy of Sciences.

Single-cell genome expression analysis?

D. Figeys, 2002 .

Solid-Phase Extraction-Capillary Zone Electrophoresis-Mass Spectrometry Analysis of Low-Abundance Proteins

R. Aebersold, D. Figeys, 2001 .

Strategies and Methods for Proteome Analysis

S. Gygi, D. Figeys, D. Goodlett, 2000 .

The Use of 18O Labeling as a Tool for Proteomic Applications

Daniel Figeys, Ty Thomson, Ian I. Stewart, 2003 .

Tryptic digestion of ubiquitin standards reveals an improved strategy for identifying ubiquitinated proteins by mass spectrometry

Jean-Philippe Lambert, Daniel Figeys, D. Figeys, 2007, Proteomics.

Optimization of solid phase microextraction ‐ capillary zone electrophoresis ‐ mass spectrometry for high sensitivity protein identification

R. Aebersold, D. Figeys, Yanni Zhang, 1998, Electrophoresis.

Purification of trypsin for mass spectrometric identification of proteins at high sensitivity.

R. Aebersold, D. Figeys, Y. Zhang, 1998, Analytical biochemistry.

Towards a Modular Microfluidic System for Proteome Analysis by Mass Spectrometry

D. Figeys, 1998 .

Identification of proteins by capillary electrophoresis-tandem mass spectrometry. Evaluation of an on-line solid-phase extraction device.

R. Aebersold, D. Figeys, A. Ducret, 1997, Journal of chromatography. A.

A non-canonical monovalent zinc finger stabilizes the integration of Cfp1 into the H3K4 methyltransferase complex COMPASS

A. Shilatifard, D. Figeys, G. Skiniotis, 2019, Nucleic acids research.

Microbiota-directed biotherapeutics: considerations for quality and functional assessment

D. Figeys, Xu Zhang, Emily Ef Fekete, 2023, Gut microbes.

Phosphoproteomics in Drug Discovery and Development

M. Moran, Chris Orsi, D. Figeys, 2006 .

Combination of online enzyme digestion with stable isotope labeling for high‐throughput quantitative proteome analysis

D. Figeys, H. Zou, Fangjun Wang, 2012, Proteomics.

Therapeutic targeting of casein kinase 1δ/ε in an Alzheimer's disease mouse model.

D. Figeys, Zhibin Ning, J. Mayne, 2019, Journal of proteome research.

Therapeutic Targeting of Casein Kinase 1δ/ε in an Alzheimer’s Disease Mouse Model

D. Figeys, Zhibin Ning, J. Mayne, 2019, bioRxiv.

Proteomic analyses of the SMYD family interactomes identify HSP90 as a novel target for SMYD2.

D. Figeys, F. Elisma, M. Abu-Farha, 2011, Journal of molecular cell biology.

Pink1 regulates FKBP5 interaction with AKT/PHLPP and protects neurons from neurotoxin stress induced by MPP+

David S. Park, D. Figeys, R. Slack, 2019, Journal of neurochemistry.

An in vitro model maintaining taxon-specific functional activities of the gut microbiome

D. Figeys, Zhibin Ning, Xu Zhang, 2019, Nature Communications.

Functional proteomics: mapping protein-protein interactions and pathways.

Daniel Figeys, D. Figeys, 2002, Current opinion in molecular therapeutics.

Array and lab on a chip technology for protein characterization.

D. Figeys, 1999, Current opinion in molecular therapeutics.

An integrated microfluidics-tandem mass spectrometry system for automated protein analysis.

S. Gygi, D. Figeys, G. Mckinnon, 1998, Analytical chemistry.

iMetaLab 1.0: a web platform for metaproteomics data analysis

Xu Zhang, Kai Cheng, Bo Liao, 2018, Bioinform..

SARS-CoV-2 Protein in Wastewater Mirrors COVID-19 Prevalence.

D. Figeys, J. Mayne, T. Graber, 2020, medRxiv.

Associations between Cellular Energy and Pediatric Inflammatory Bowel Disease Patient Response to Treatment.

D. Figeys, Zhibin Ning, E. Benchimol, 2021, Journal of proteome research.

Deep characterization of the protein lysine acetylation in human gut microbiome and its alterations in patients with Crohn’s disease

D. Figeys, Zhibin Ning, Xu Zhang, 2019 .

Quantitative proteomic analysis of PCSK9 gain of function in human hepatic HuH7 cells.

D. Figeys, A. Prat, N. Seidah, 2011, Journal of proteome research.

Phosphoproteome Profiling Reveals Circadian Clock Regulation of Posttranslational Modifications in the Murine Hippocampus

D. Figeys, H. Zou, Zhibin Ning, 2017, Front. Neurol..

The Proteomic Landscape of the Suprachiasmatic Nucleus Clock Reveals Large-Scale Coordination of Key Biological Processes

Zhibin Ning, Daniel Figeys, Cheng-Kang Chiang, 2014, PLoS genetics.

Time-of-Day- and Light-Dependent Expression of Ubiquitin Protein Ligase E3 Component N-Recognin 4 (UBR4) in the Suprachiasmatic Nucleus Circadian Clock

D. Figeys, H. M. Cheng, Ruijun Tian, 2014, PloS one.

Studying the Temporal Dynamics of the Gut Microbiota Using Metabolic Stable Isotope Labeling and Metaproteomics.

D. Figeys, Zhibin Ning, Xu Zhang, 2020, Analytical chemistry.

Amyloid-β42 signals tau hyperphosphorylation and compromises neuronal viability by disrupting alkylacylglycerophosphocholine metabolism

David S. Park, Alexandre P. Blanchard, D. Figeys, 2009, Proceedings of the National Academy of Sciences.

Catching a resurgence: Increase in SARS-CoV-2 viral RNA identified in wastewater 48 h before COVID-19 clinical tests and 96 h before hospitalizations

D. Figeys, M. Servos, Xu Zhang, 2020, Science of The Total Environment.

Comparative proteomic analysis reveals metabolic variability of probiotic Enterococcus durans during aerobic and anaerobic cultivation.

D. Figeys, Xu Zhang, A. Brandelli, 2020, Journal of proteomics.

Quantitative phosphoproteomics reveals involvement of multiple signaling pathways in early phagocytosis by the retinal pigmented epithelium

D. Figeys, K. Palczewski, Zhibin Ning, 2017, The Journal of Biological Chemistry.

Protein identification by capillary zone electrophoresis/microelectrospray ionization-tandem mass spectrometry at the subfemtomole level.

R. Aebersold, D. Figeys, A. Ducret, 1996, Analytical chemistry.

Skeletal myosin light chain kinase regulates skeletal myogenesis by phosphorylation of MEF2C

D. Figeys, I. Skerjanc, N. Wiper-Bergeron, 2011, The EMBO journal.

Platelet activating factors are associated with depressive symptoms in coronary artery disease patients: a hypothesis-generating study

Alexandre P. Blanchard, D. Figeys, N. Herrmann, 2015, Neuropsychiatric disease and treatment.

Platelet-activating factors are associated with cognitive deficits in depressed coronary artery disease patients: a hypothesis-generating study

D. Figeys, N. Herrmann, Hongbin Xu, 2014, Journal of Neuroinflammation.

Platelet-activating factors are associated with cognitive deficits in depressed coronary artery disease patients: a hypothesis-generating study

D. Figeys, N. Herrmann, Hongbin Xu, 2014, Journal of Neuroinflammation.

Differential Lysis Approach Enables Selective Extraction of Taxon-Specific Proteins for Gut Metaproteomics.

D. Figeys, Zhibin Ning, Xu Zhang, 2020, Analytical chemistry.

Differential proteomic screen to evidence proteins ubiquitinated upon mitotic exit in cell-free extract of Xenopus laevis embryos.

D. Figeys, K. S. Lo, J. Gagné, 2008, Journal of proteome research.

Definition and characterization of a "trypsinosome" from specific peptide characteristics by nano-HPLC-MS/MS and in silico analysis of complex protein mixtures.

Daniel Figeys, Mark D Robinson, M. Robinson, 2004, Journal of proteome research.

On-line strong cation exchange μ-HPLC-ESI-MS/MS for protein identification and process optimization

D. Figeys, H. Duewel, T. Bihan, 2003, Journal of the American Society for Mass Spectrometry.

Nonsynonymous Mutations within APOB in Human Familial Hypobetalipoproteinemia

D. Figeys, Hulping Zhou, Z. Yao, 2009, The Journal of Biological Chemistry.

Differential regulation of wild-type and mutant alpha-synuclein binding to synaptic membranes by cytosolic factors

D. Figeys, P. Fraser, S. Bennett, 2008, BMC Neuroscience.

BAG2 Gene-mediated Regulation of PINK1 Protein Is Critical for Mitochondrial Translocation of PARKIN and Neuronal Survival*

David S. Park, Maxime W. C. Rousseaux, D. Figeys, 2015, The Journal of Biological Chemistry.

Proteomic analysis of minute amount of colonic biopsies by enteroscopy sampling.

D. Figeys, W. Jia, Hu Zhou, 2016, Biochemical and biophysical research communications.

The Functional Characteristics of Goat Cheese Microbiota from a One-Health Perspective

D. Figeys, F. Iavarone, A. Urbani, 2022, International journal of molecular sciences.

DJ-1 Interacts with and Regulates Paraoxonase-2, an Enzyme Critical for Neuronal Survival in Response to Oxidative Stress

David S. Park, Maxime W. C. Rousseaux, D. Figeys, 2014, PloS one.

Uncovering the Proteome Response of the Master Circadian Clock to Light Using an AutoProteome System*

Daniel Figeys, Ruijun Tian, D. Figeys, 2011, Molecular & Cellular Proteomics.

Revealing proteome-level functional redundancy in the human gut microbiome using ultra-deep metaproteomics

Caitlin M. A. Simopoulos, D. Figeys, Yang‐Yu Liu, 2021, bioRxiv.

Proteomics approaches in drug discovery.

D. Figeys, 2002, Analytical chemistry.

Positive mood-related gut microbiota in a long-term closed environment: a multiomics study based on the “Lunar Palace 365” experiment

D. Figeys, Leyuan Li, Chen Meng, 2023, Microbiome.

Site-specific characterization of cell membrane N-glycosylation with integrated hydrophilic interaction chromatography solid phase extraction and LC-MS/MS.

D. Figeys, H. Zou, M. Ye, 2014, Journal of proteomics.

Comprehensive assessment of functional effects of commonly used sweeteners on ex vivo human gut microbiome

D. Figeys, Zhibin Ning, Xu Zhang, 2022, bioRxiv.

Proteomics: from technology developments to biological applications.

D. Figeys, F. Elisma, M. Abu-Farha, 2009, Analytical chemistry.

From cells to peptides: "one-stop" integrated proteomic processing using amphipols.

D. Figeys, Zhibin Ning, Deeptee Seebun, 2013, Journal of proteome research.

Highly sensitive detection of S-nitrosylated proteins by capillary gel electrophoresis with laser induced fluorescence.

T. Aw, D. Figeys, Hulping Zhou, 2011, Journal of chromatography. A.

Phospholipase C Activity Affinity Purifies with the Torpedo Nicotinic Acetylcholine Receptor*

D. Figeys, J. Baenziger, Jeffrey C. Smith, 2010, The Journal of Biological Chemistry.

Proteomics: from gel based to gel free.

Jean-Philippe Lambert, Daniel Figeys, D. Figeys, 2005, Analytical chemistry.

Labeling of double-stranded DNA by ROX-dideoxycytosine triphosphate using terminal deoxynucleotidyl transferase and separation by capillary electrophoresis.

D. Figeys, N. Dovichi, A. Renborg, 1994, Analytical chemistry.

Proteomic reactors and their applications in biology

Zhibin Ning, Daniel Figeys, Fangjun Wang, 2011, The FEBS journal.

Phosphoproteome analysis of an early onset mouse model (TgCRND8) of Alzheimer's disease reveals temporal changes in neuronal and glia signaling pathways

Alexandre P. Blanchard, D. Figeys, H. Zou, 2013, Proteomics.

Mapping protein-protein interactions by mass spectrometry.

Daniel Figeys, D. Figeys, Julian Vasilescu, 2006, Current opinion in biotechnology.

Exploring the effects of operational mode and microbial interactions on bacterial community assembly in a one-stage partial-nitritation anammox reactor using integrated multi-omics

D. Figeys, Xu Zhang, Tong Zhang, 2019, Microbiome.

Butyrate's role in human health and the current progress towards its clinical application to treat gastrointestinal disease.

D. Figeys, A. Stintzi, K. Hodgkinson, 2022, Clinical nutrition.

Identification of lysines within membrane-anchored Mga2p120 that are targets of Rsp5p ubiquitination and mediate mobilization of tethered Mga2p90.

D. Figeys, Jeffrey C. Smith, D. Haines, 2009, Journal of molecular biology.

Development of Online pH Gradient-Eluted Strong Cation Exchange Nanoelectrospray-Tandem Mass Spectrometry for Proteomic Analysis Facilitating Basic and Histidine-Containing Peptides Identification.

D. Figeys, Hu Zhou, Yiming Yang, 2016, Analytical chemistry.

Proteomics in 2005/2006: developments, applications and challenges.

Jean-Philippe Lambert, Daniel Figeys, Fred Elisma, 2007, Analytical chemistry.

Lab-on-a-chip: a revolution in biological and medical sciences

D. Figeys, Figeys, Pinto, 2000, Analytical chemistry.

An emerging field: Post‐translational modification in microbiome

D. Figeys, Xu Zhang, Haonan Duan, 2022, PROTEOMICS.

N-Glycopeptide Reduction with Exoglycosidases Enables Accurate Characterization of Site-Specific N-Glycosylation.

D. Figeys, Zhibin Ning, Rui Chen, 2016, Analytical chemistry.

Lyso-form fragment ions facilitate the determination of stereospecificity of diacyl glycerophospholipids.

D. Figeys, S. Bennett, Weimin Hou, 2011, Rapid communications in mass spectrometry : RCM.

Large-scale characterization of intact N-glycopeptides using an automated glycoproteomic method.

D. Figeys, M. Ye, Rui Chen, 2014, Journal of proteomics.

Detergent-Assisted Glycoprotein Capture: A Versatile Tool for In-Depth N-Glycoproteome Analysis.

D. Figeys, Rui Chen, Hanfa Zou, 2016, Journal of proteome research.

Missense Mutation in APOC3 within the C-terminal Lipid Binding Domain of Human ApoC-III Results in Impaired Assembly and Secretion of Triacylglycerol-rich Very Low Density Lipoproteins

D. Figeys, W. Jia, Hulping Zhou, 2011, The Journal of Biological Chemistry.

Lipidomics era: accomplishments and challenges.

Alexandre P. Blanchard, D. Figeys, F. Elisma, 2010, Mass spectrometry reviews.

Bottom-Up Proteomics (2013-2015): Keeping up in the Era of Systems Biology.

D. Figeys, Zhibin Ning, Xu Zhang, 2016, Analytical chemistry.

Microfabricated device coupled with an electrospray ionization quadrupole time-of-flight mass spectrometer: protein identifications based on enhanced-resolution mass spectrometry and tandem mass spectrometry data.

R. Aebersold, D. Figeys, C. Lock, 1998, Rapid communications in mass spectrometry : RCM.

Nonsynonymous Mutations within APOB in Human Familial Hypobetalipoproteinemia

D. Figeys, Hulping Zhou, Z. Yao, 2009, The Journal of Biological Chemistry.

Improved Recovery and Identification of Membrane Proteins from Rat Hepatic Cells using a Centrifugal Proteomic Reactor*

D. Figeys, Zhibin Ning, Weimin Hou, 2011, Molecular & Cellular Proteomics.

The Influence of Protein Secretomes of Enterococcus durans on ex vivo Human Gut Microbiome.

D. Figeys, Xu Zhang, J. Mayne, 2023, Probiotics and antimicrobial proteins.

A differential phosphoproteomic analysis of retinoic acid-treated P19 cells.

Daniel Figeys, D. Figeys, M. Ethier, 2007, Journal of proteome research.

A charge-suppressing strategy for probing protein methylation.

D. Figeys, Zhibin Ning, J. Mayne, 2016, Chemical communications.

Predicting Glycerophosphoinositol Identities in Lipidomic Datasets Using VaLID (Visualization and Phospholipid Identification)—An Online Bioinformatic Search Engine

Graeme S. V. McDowell, Alexandre P. Blanchard, D. Figeys, 2014, BioMed research international.

In Vitro Metabolic Labeling of Intestinal Microbiota for Quantitative Metaproteomics.

James Butcher, Zhibin Ning, Xu Zhang, 2016, Analytical chemistry.

Proteomic analysis of ubiquitinated proteins employing mass spectrometry-based techniques

D. Figeys, J. Vasilescu, Alexandre Blais, 2010 .

MetaLab: an automated pipeline for metaproteomic data analysis

Zhibin Ning, Xu Zhang, Leyuan Li, 2017, Microbiome.

From cells to peptides: "one-stop" integrated proteomic processing using amphipols.

D. Figeys, Zhibin Ning, Deeptee Seebun, 2013, Journal of proteome research.

Co-targeting Bulk Tumor and CSCs in Clinically Translatable TNBC Patient-Derived Xenografts via Combination Nanotherapy

D. Figeys, T. Alain, Lisheng Wang, 2019, Molecular Cancer Therapeutics.

Two-color cell array screen reveals interdependent roles for histone chaperones and a chromatin boundary regulator in histone gene repression.

T. Hughes, J. Greenblatt, D. Figeys, 2009, Molecular cell.

A Novel Proteomics Approach for the Discovery of Chromatin-associated Protein Networks*S

D. Figeys, K. Baetz, Jean-Philippe Lambert, 2009, Molecular & Cellular Proteomics.