A. Zhang

Aidong Zhang, Chun Tang, Murali Ramanathan, 2001, Proceedings 2nd Annual IEEE International Symposium on Bioinformatics and Bioengineering (BIBE 2001).

Identifying Affinity Classes of Inorganic Materials Binding Sequences via a Graph-Based Model

Aidong Zhang, Nan Du, Marc R. Knecht, 2015, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

A Framework for Identifying Affinity Classes of Inorganic Materials Binding Peptide Sequences

Aidong Zhang, Nan Du, Paras N. Prasad, 2013, BCB.

Multi-agent Model Analysis of the Containment Strategy for Avian Influenza (AI) in South Korea

Aidong Zhang, Woochang Hwang, Murali Ramanathan, 2008, 2008 IEEE International Conference on Bioinformatics and Biomedicine.

Boost Feature Subset Selection: A New Gene Selection Algorithm for Microarray Dataset

Aidong Zhang, Xian Xu, A. Zhang, 2006, International Conference on Computational Science.

Virtual Gene: Using Correlations Between Genes to Select Informative Genes on Microarray Datasets

Aidong Zhang, Xian Xu, A. Zhang, 2005, Trans. Comp. Sys. Biology.

On mining cross-graph quasi-cliques

Jian Pei, Aidong Zhang, Daxin Jiang, 2005, KDD '05.

Protein complex identification through Markov clustering with firefly algorithm on dynamic protein-protein interaction networks

Witold Pedrycz, Fei Wang, Xiujuan Lei, 2016, Inf. Sci..

Survey: Functional Module Detection from Protein-Protein Interaction Networks

Xiaomei Quan, Aidong Zhang, Zhijun Liu, 2014, IEEE Transactions on Knowledge and Data Engineering.

Selecting informative genes from microarray dataset by incorporating gene ontology

Aidong Zhang, Xian Xu, A. Zhang, 2005, Fifth IEEE Symposium on Bioinformatics and Bioengineering (BIBE'05).

Semantic integration to identify overlapping functional modules in protein interaction networks

Aidong Zhang, Young-Rae Cho, Woochang Hwang, 2007, BMC Bioinformatics.

Clustering Methods in a Protein–Protein Interaction Network

Aidong Zhang, Young-Rae Cho, Chuan Lin, 2007 .

A graph-based cluster ensemble method to detect protein functional modules from multiple information sources

Yuan Zhang, Kebin Jia, Liang Ge, 2012, BCB.

Improved Ant Colony Optimization for Detecting Functional Modules in Protein-Protein Interaction Networks

Aidong Zhang, Zhijun Liu, Chunnian Liu, 2012, ICICA.

Ant Colony Optimization with Multi-Agent Evolution for Detecting Functional Modules in Protein-Protein Interaction Networks

Aidong Zhang, Zhijun Liu, Chunnian Liu, 2012, ICICA.

Semi-supervised learning protein complexes from protein interaction networks

Lei Shi, Aidong Zhang, A. Zhang, 2010, 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

CASCADE: a novel quasi all paths-based network analysis algorithm for clustering biological interactions

Aidong Zhang, Young-Rae Cho, Woochang Hwang, 2008, BMC Bioinformatics.

A novel functional module detection algorithm for protein-protein interaction networks

Aidong Zhang, Young-Rae Cho, Woochang Hwang, 2006, Algorithms for Molecular Biology.

BFO-FMD: bacterial foraging optimization for functional module detection in protein–protein interaction networks

Aidong Zhang, Junzhong Ji, Cuicui Yang, 2018, Soft Comput..

ACC-FMD: ant colony clustering for functional module detection in protein-protein interaction networks

Aidong Zhang, Zhijun Liu, Chunnian Liu, 2015, Int. J. Data Min. Bioinform..

HAM-FMD: Mining functional modules in protein-protein interaction networks using ant colony optimization and multi-agent evolution

Aidong Zhang, Zhijun Liu, Chunnian Liu, 2013, Neurocomputing.

Omics Informatics: From Scattered Individual Software Tools to Integrated Workflow Management Systems

Aidong Zhang, Tianle Ma, A. Zhang, 2017, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Aidong Zhang, Chun Tang, Murali Ramanathan, 2003, Computational Biology and Genome Informatics.

An iterative strategy for pattern discovery in high-dimensional data sets

Aidong Zhang, Chun Tang, A. Zhang, 2002, CIKM '02.

Interactive visualization and analysis for gene expression data

Aidong Zhang, Chun Tang, Li Zhang, 2002, Proceedings of the 35th Annual Hawaii International Conference on System Sciences.

2K09 and thereafter : the coming era of integrative bioinformatics, systems biology and intelligent computing for functional genomics and personalized medicine research

Yunlong Liu, A Keith Dunker, Ruzena Bajcsy, 2010, BMC Genomics.

A framework for robust differential network modular structure discovery from RNA-seq data

Aidong Zhang, Tianle Ma, A. Zhang, 2016, 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Integrate multi-omics data with biological interaction networks using Multi-view Factorization AutoEncoder (MAE)

Aidong Zhang, Tianle Ma, A. Zhang, 2019, BMC Genomics.

Finding informative genes for prostate cancer: a general framework of integrating heterogeneous sources

Jing Gao, Liang Ge, Aidong Zhang, 2012, BCB.

Finding Informative Genes from Multiple Microarray Experiments: A Graph-based Consensus Maximization Model

Liang Ge, Aidong Zhang, Nan Du, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine.

AN ARTIFICIAL FISH SWARM BASED SUPERVISED GENE RANK AGGREGATION ALGORITHM FOR INFORMATIVE GENES STUDIES

Aidong Zhang, Nan Du, Supriya D. Mahajan, 2011 .

Protein Interaction Networks: Computational Analysis

Aidong Zhang, A. Zhang, 2009 .

Cluster analysis for gene expression data: a survey

Aidong Zhang, Daxin Jiang, Chun Tang, 2004, IEEE Transactions on Knowledge and Data Engineering.

Dynamic tracking of functional gene modules in treated juvenile idiopathic arthritis

A. Zhang, Nan Du, K. Jiang, 2015, Genome Medicine.

Efficient Modularization of Weighted Protein Interaction Networks using k-Hop Graph Reduction

Aidong Zhang, Woochang Hwang, Young-Rae Cho, 2006, Sixth IEEE Symposium on BioInformatics and BioEngineering (BIBE'06).

A Novel Semi-Supervised Deep Learning Framework for Affective State Recognition on EEG Signals

Aidong Zhang, Kang Li, Xiaoyi Li, 2014, 2014 IEEE International Conference on Bioinformatics and Bioengineering.

Predicting essential proteins based on RNA-Seq, subcellular localization and GO annotation datasets

Jie Zhao, Xiujuan Lei, Aidong Zhang, 2018, Knowl. Based Syst..

Incorporating Biological Knowledge with Factor Graph Neural Network for Interpretable Deep Learning pdf

Aidong Zhang, Tianle Ma, A. Zhang, 2019, ArXiv.

A two-step approach for clustering proteins based on protein interaction profile

Aidong Zhang, Pengjun Pei, A. Zhang, 2005, Fifth IEEE Symposium on Bioinformatics and Bioengineering (BIBE'05).

VizCluster and its Application on Classifying Gene Expression Data

Aidong Zhang, Yuqing Song, Chun Tang, 2004, Distributed and Parallel Databases.

Mining gene–sample–time microarray data: a coherent gene cluster discovery approach

Jian Pei, Aidong Zhang, Daxin Jiang, 2007, Knowledge and Information Systems.

AffinityNet: semi-supervised few-shot learning for disease type prediction pdf

Aidong Zhang, Tianle Ma, A. Zhang, 2018, AAAI.

Modularization of Protein Interaction Networks by Incorporating Gene Ontology Annotations

Aidong Zhang, Young-Rae Cho, Woochang Hwang, 2007, 2007 IEEE Symposium on Computational Intelligence and Bioinformatics and Computational Biology.

Prediction of Protein Function Using Common-Neighbors in Protein-Protein Interaction Networks

Aidong Zhang, Daxin Jiang, Chuan Lin, 2006, Sixth IEEE Symposium on BioInformatics and BioEngineering (BIBE'06).

ACOEC-FD: Ant Colony Optimization for Learning Brain Effective Connectivity Networks From Functional MRI and Diffusion Tensor Imaging

Aidong Zhang, Junzhong Ji, Jinduo Liu, 2019, Front. Neurosci..

BFO-FMD: bacterial foraging optimization for functional module detection in protein–protein interaction networks

A. Zhang, Junzhong Ji, Cuicui Yang, 2017, Soft Computing.

Affinity network fusion and semi-supervised learning for cancer patient clustering.

Aidong Zhang, Tianle Ma, A. Zhang, 2018, Methods.

Privacy Preserving Calculation of Fisher Criterion Score for Informative Gene Selection

Sheng Zhong, Aidong Zhang, Suxin Guo, 2014, 2014 IEEE International Conference on Bioinformatics and Bioengineering.

Detecting mutual functional gene clusters from multiple related diseases

Yuan Zhang, Aidong Zhang, Nan Du, 2013, 2013 IEEE International Conference on Bioinformatics and Biomedicine.

A link prediction based unsupervised rank aggregation algorithm for informative gene selection

Aidong Zhang, Kang Li, Nan Du, 2012, 2012 IEEE International Conference on Bioinformatics and Biomedicine.

SS-ClusterTree: a subspace clustering based indexing algorithm over high-dimensional image features

De Xu, Aidong Zhang, Hongli Xu, 2008, CIVR '08.

Predicting the associations between microbes and diseases by integrating multiple data sources and path-based HeteSim scores

Xiujuan Lei, Aidong Zhang, Chunyan Fan, 2019, Neurocomputing.

Algorithms for Efficient Mining of Statistically Significant Attribute Association Information pdf

Aidong Zhang, Pritam Chanda, Murali Ramanathan, 2012, ArXiv.

Modeling of environmental and genetic interactions with AMBROSIA, an information-theoretic model synthesis method

A Zhang, M Ramanathan, P. Chanda, 2011, Heredity.

A Computational Model of Mitigating Disease Spread in Spatial Networks

Aidong Zhang, Kang Li, Murali Ramanathan, 2011, Int. J. Artif. Life Res..

Identification of critical location on a microstructural bone network

Aidong Zhang, Kang Li, Murali Ramanathan, 2010, 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

On handling negative transfer and imbalanced distributions in multiple source transfer learning

Jing Gao, Liang Ge, Aidong Zhang, 2014, SDM.

OMS-TL: a framework of online multiple source transfer learning

Liang Ge, Aidong Zhang, Jing Gao, 2013, CIKM.

An Ensemble Model for Mobile Device based Arrhythmia Detection

Jing Gao, Aidong Zhang, Kang Li, 2013, BCB.

On handling negative transfer and imbalanced distributions in multiple source transfer learning

Jing Gao, Liang Ge, Aidong Zhang, 2014, SDM.

Bridging centrality: graph mining from element level to group level

Aidong Zhang, Woochang Hwang, Murali Ramanathan, 2008, KDD.

A two-stage search strategy for detecting multiple loci associated with rheumatoid arthritis

Aidong Zhang, Pritam Chanda, Murali Ramanathan, 2009, BMC proceedings.

Clustering and overlapping modules detection in PPI network based on IBFO

Shuang Wu, Xiujuan Lei, Liang Ge, 2013, Proteomics.

VizStruct: exploratory visualization for gene expression profiling

Aidong Zhang, Murali Ramanathan, Li Zhang, 2004, Bioinform..

Bone disease prediction and phenotype discovery using feature representation over electronic health records

Hui Li, Aidong Zhang, Xiaoyi Li, 2015, BCB.

Identifying informative risk factors and predicting bone disease progression via deep belief networks.

Aidong Zhang, Xiaoyi Li, Hui Li, 2014, Methods.

A Semi-Supervised Learning Approach to Integrated Salient Risk Features for Bone Diseases

Hui Li, Aidong Zhang, Xiaoyi Li, 2013, BCB.

Detecting functional modules in dynamic protein-protein interaction networks using Markov Clustering and Firefly Algorithm

Fei Wang, Xiujuan Lei, Aidong Zhang, 2014, 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Functional Influence-Based Approach to Identify Overlapping Modules in Biological Networks

Aidong Zhang, Young-Rae Cho, A. Zhang, 2010, Link Mining.

flowNet: Flow-Based Approach for Efficient Analysis of Complex Biological Networks

Lei Shi, Aidong Zhang, Young-Rae Cho, 2009, 2009 Ninth IEEE International Conference on Data Mining.

Artificial bee colony clustering with self-adaptive crossover and stepwise search for brain functional parcellation in fMRI data

Aidong Zhang, Xuewu Zhao, Junzhong Ji, 2018, Soft Computing.

Identification of dynamic protein complexes based on fruit fly optimization algorithm

Xiujuan Lei, Aidong Zhang, Hamido Fujita, 2016, Knowl. Based Syst..

Improved artificial bee colony algorithm and its application in data clustering

Xiujuan Lei, Aidong Zhang, Xu Huang, 2010, 2010 IEEE Fifth International Conference on Bio-Inspired Computing: Theories and Applications (BIC-TA).

Prediction and Informative Risk Factor Selection of Bone Diseases

Hui Li, Aidong Zhang, Xiaoyi Li, 2013, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Information-theoretic metrics for visualizing gene-environment interactions.

Aidong Zhang, Pritam Chanda, Murali Ramanathan, 2007, American journal of human genetics.

3D bone microarchitecture modeling and fracture risk prediction

Hui Li, Aidong Zhang, Xiaoyi Li, 2012, BCB.

Mining of Attribute Interactions Using Information Theoretic Metrics

Aidong Zhang, Pritam Chanda, Young-Rae Cho, 2009, 2009 IEEE International Conference on Data Mining Workshops.

A Deep Learning Approach to Link Prediction in Dynamic Networks

Hui Li, Jing Gao, Aidong Zhang, 2014, SDM.

BoneNET: a network model of bone microstructure and dynamics

Aidong Zhang, Murali Ramanathan, Taehyong Kim, 2013, Int. J. Data Min. Bioinform..

Computational Framework for Microstructural Bone Dynamics Model and Its Evaluation

Aidong Zhang, Woochang Hwang, Murali Ramanathan, 2010, 2010 IEEE International Conference on BioInformatics and BioEngineering.

iOPTICS-GSO for identifying protein complexes from dynamic PPI networks

A. Zhang, Fang-Xiang Wu, Xiu-juan Lei, 2017, BMC Medical Genomics.

Damage isolation via strategic self-destruction: A case study in 2D random networks

Aidong Zhang, Woochang Hwang, Murali Ramanathan, 2009 .

Analysis of Differentially-Expressed Genes

A. Zhang, 2006 .

A generative model of identifying informative proteins from dynamic PPI networks

Yuan Zhang, A. Zhang, Ke-bin Jia, 2014, Science China Life Sciences.

A graph-based integrative method of detecting consistent protein functional modules from multiple data sources

Yuan Zhang, Kebin Jia, Liang Ge, 2015, Int. J. Data Min. Bioinform..

ANN Based Protein Function Prediction Using Integrated Protein-Protein Interaction Data

Lei Shi, Aidong Zhang, Young-Rae Cho, 2009, 2009 International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing.

A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge

Lei Shi, Aidong Zhang, Young-Rae Cho, 2008, BMC Bioinformatics.

A topological measurement for weighted protein interaction network

Aidong Zhang, Pengjun Pei, A. Zhang, 2005, 2005 IEEE Computational Systems Bioinformatics Conference (CSB'05).

PREDICTION OF PROTEIN FUNCTION FROM CONNECTIVITY OF PROTEIN INTERACTION NETWORKS

Aidong Zhang, Young-Rae Cho, A. Zhang, 2010 .

Matching Titles with Cross Title Web-Search Enrichment and Community Detection

Rohini K. Srihari, Aidong Zhang, Hung Q. Ngo, 2014, Proc. VLDB Endow..

A Network Modeling Approach for the Spatial Distribution and Structure of Bone Mineral Content

A. Zhang, M. Ramanathan, L. Bone, 2014, The AAPS Journal.

Mining coherent gene clusters from gene-sample-time microarray data

Jian Pei, Aidong Zhang, Daxin Jiang, 2004, KDD.

DHC: a density-based hierarchical clustering method for time series gene expression data

Jian Pei, Aidong Zhang, Daxin Jiang, 2003, Third IEEE Symposium on Bioinformatics and Bioengineering, 2003. Proceedings..

DRN: Bringing Greedy Layer-Wise Training into Time Dimension

Hui Li, Jing Gao, Aidong Zhang, 2015, 2015 IEEE International Conference on Data Mining.

Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins

Aidong Zhang, Young-Rae Cho, A. Zhang, 2010, BMC Bioinformatics.

Discovering Frequent Patterns of Functional Associations in Protein Interaction Networks for Function Prediction

Aidong Zhang, Young-Rae Cho, A. Zhang, 2008, 2008 IEEE International Conference on Bioinformatics and Biomedicine.

Predicting Protein Function by Frequent Functional Association Pattern Mining in Protein Interaction Networks

Aidong Zhang, Young-Rae Cho, A. Zhang, 2010, IEEE Transactions on Information Technology in Biomedicine.

Visualized Classification of Multiple Sample Types

Aidong Zhang, Murali Ramanathan, Li Zhang, 2002, BIOKDD.

Bridging Centrality: Identifying Bridging Nodes in Scale-free Networks

Aidong Zhang, Young-Rae Cho, Woochang Hwang, 2006 .

Integrate multi-omic data using affinity network fusion (ANF) for cancer patient clustering

Aidong Zhang, Tianle Ma, A. Zhang, 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Towards Detecting Protein Complexes from Protein Interaction Data

Aidong Zhang, Pengjun Pei, A. Zhang, 2006, International Conference on Computational Science.

Secure Inter-Domain Forwarding Loop Test in Software Defined Networks

Sheng Zhong, Yuan Zhang, Aidong Zhang, 2020, IEEE Transactions on Dependable and Secure Computing.

Privacy-preserving Kruskal-Wallis test

Sheng Zhong, Aidong Zhang, Suxin Guo, 2013, Comput. Methods Programs Biomed..

Integrated feature subset selection/extraction with applications in bioinformatics

Aidong Zhang, Xian Xu, A. Zhang, 2006 .

Advanced Analysis of Gene Expression Microarray Data

Aidong Zhang, A. Zhang, 2006, Science, Engineering, and Biology Informatics.

Virtual Gene: A Gene Selection Algorithm for Sample Classification on Microarray Datasets

Aidong Zhang, Xian Xu, A. Zhang, 2005, International Conference on Computational Science.

Feature Selection Model for Diagnosis, Electronic Medical Records and Geographical Data Correlation

Pietro Hiram Guzzi, Giuseppe Tradigo, Aidong Zhang, 2016, BCB.

Restructuring Protein Interaction Networks to Reveal Structural Hubs and Functional Organizations

Aidong Zhang, Young-Rae Cho, A. Zhang, 2009, 2009 IEEE International Conference on Bioinformatics and Biomedicine.

An ACO based functional module detection algorithm for protein interaction networks

Lei Shi, Aidong Zhang, A. Zhang, 2011, BCB '11.

The interaction index, a novel information-theoretic metric for prioritizing interacting genetic variations and environmental factors

Aidong Zhang, Pritam Chanda, Murali Ramanathan, 2009, European Journal of Human Genetics.

Affective state recognition from EEG with deep belief networks

Yuan Zhang, Aidong Zhang, Kang Li, 2013, 2013 IEEE International Conference on Bioinformatics and Biomedicine.

VizStruct for visualization of genome-wide SNP analyses

Aidong Zhang, Murali Ramanathan, Kavitha Bhasi, 2006, Bioinform..

Pseudo Cold Start Link Prediction with Multiple Sources in Social Networks

Liang Ge, Aidong Zhang, A. Zhang, 2012, SDM.

A novel functional module detection algorithm for protein-protein interaction networks

A. Zhang, M. Ramanathan, W. Hwang, 2006, Algorithms for Molecular Biology.

Towards interactive exploration of gene expression patterns

Jian Pei, Aidong Zhang, Daxin Jiang, 2003, SKDD.

The clustering model and algorithm of PPI network based on propagating mechanism of artificial bee colony

Xiujuan Lei, Liang Ge, Aidong Zhang, 2013, Inf. Sci..

Clustering PPI Data Based on Bacteria Foraging Optimization Algorithm

Shuang Wu, Xiujuan Lei, Liang Ge, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine.

Optimizing Flow-based Modularization by Iterative Centroid Search in Protein Interaction Networks

Aidong Zhang, Young-Rae Cho, Woochang Hwang, 2007, 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering.

Identification of Overlapping Functional Modules in Protein Interaction Networks: Information Flow-based Approach

A. Zhang, W. Hwang, Young-Rae Cho, 2006, Sixth IEEE International Conference on Data Mining - Workshops (ICDMW'06).

Critical protein detection in dynamic PPI networks with multi-source integrated deep belief nets

Yuan Zhang, Kebin Jia, Aidong Zhang, 2013, 2013 IEEE International Conference on Bioinformatics and Biomedicine.

Co-regulated Protein Functional Modules with Varying Activities in Dynamic PPI Networks

Yuan Zhang, Kebin Jia, Aidong Zhang, 2013 .

Clustering PPI data based on Improved functional-flow model through Quantum-behaved PSO

Xiujuan Lei, Lei Shi, Aidong Zhang, 2012, Int. J. Data Min. Bioinform..

A Privacy Preserving Markov Model for Sequence Classification

Sheng Zhong, Aidong Zhang, Suxin Guo, 2013, BCB.

A system for geoanalysis of clinical and geographical data

Pietro Hiram Guzzi, Giuseppe Tradigo, Aidong Zhang, 2014, HealthGIS '14.

On the Analysis of Diseases and Their Related Geographical Data

Giuseppe Tradigo, Aidong Zhang, Pierangelo Veltri, 2017, IEEE Journal of Biomedical and Health Informatics.

An ant colony optimization algorithm for learning brain effective connectivity network from fMRI data

Aidong Zhang, Peipeng Liang, Junzhong Ji, 2016, 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Enhanced visualization of time series through higher fourier harmonics

Aidong Zhang, Murali Ramanathan, Li Zhang, 2003, BIOKDD.

Gene Co-Adaboost: a semi-supervised approach for classifying gene expression data

Aidong Zhang, Kang Li, Nan Du, 2011, BCB '11.

A collective NMF method for detecting protein functional module from multiple data sources

Yuan Zhang, Kebin Jia, Liang Ge, 2012, BCB.

Fourier harmonic approach for visualizing temporal patterns of gene expression data

Aidong Zhang, Murali Ramanathan, Li Zhang, 2003, Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003.

An interactive approach to mining gene expression data

Jian Pei, Aidong Zhang, Daxin Jiang, 2005, IEEE Transactions on Knowledge and Data Engineering.

Prediction and Informative Risk Factor Selection of Bone Diseases

A. Zhang, M. Ramanathan, Xiaoyi Li, 2015, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Spatial modeling of bone microarchitecture

Hui Li, Aidong Zhang, Kang Li, 2012, Electronic Imaging.

Influence based analysis of community consistency in dynamic networks

Yuan Zhang, A. Zhang, Xiaoyi Li, 2016, 2016 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM).

Progression Analysis of Community Strengths in Dynamic Networks

Jing Gao, Aidong Zhang, Nan Du, 2013, 2013 IEEE 13th International Conference on Data Mining.

Feature Extraction from Microarray Expression Data by Integration of Semantic Knowledge

Aidong Zhang, Young-Rae Cho, Woochang Hwang, 2007, Sixth International Conference on Machine Learning and Applications (ICMLA 2007).

iOPTICS-GSO for identifying protein complexes from dynamic PPI networks

Xiujuan Lei, Aidong Zhang, Fang-Xiang Wu, 2017, BMC Medical Genomics.

Mining multiple phenotype structures underlying gene expression profiles

Aidong Zhang, Chun Tang, A. Zhang, 2003, CIKM '03.

Interactive exploration of coherent patterns in time-series gene expression data

Jian Pei, Aidong Zhang, Daxin Jiang, 2003, KDD '03.

Reconstructing context-specific gene regulatory network and identifying modules and network rewiring through data integration.

A. Zhang, Tianle Ma, 2017, Methods.

Functional Flow Simulation Based Analysis of Protein Interaction Network

Lei Shi, Aidong Zhang, Young-Rae Cho, 2010, 2010 IEEE International Conference on BioInformatics and BioEngineering.

Evolutionary analysis of functional modules in dynamic PPI networks

Yuan Zhang, Jing Gao, Aidong Zhang, 2012, BCB.

De-noise biological network from heterogeneous sources via link propagation

Jing Gao, Aidong Zhang, Nan Du, 2012, 2012 IEEE International Conference on Bioinformatics and Biomedicine.

Protein Interaction Networks: Computational Analysis

A. Zhang, 2009 .

Functional module detection by functional flow pattern mining in protein interaction networks

Lei Shi, Aidong Zhang, Young-Rae Cho, 2008, BMC Bioinformatics.

Multi-view Factorization AutoEncoder with Network Constraints for Multi-omic Integrative Analysis

Aidong Zhang, Tianle Ma, A. Zhang, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Risk Factor Analysis Based on Deep Learning Models

Jing Gao, Aidong Zhang, Qiuling Suo, 2016, BCB.

A generative framework for prediction and informative risk factor selection of bone diseases

A. Zhang, M. Ramanathan, Xiaoyi Li, 2013, 2013 IEEE International Conference on Bioinformatics and Biomedicine.

GPX: Interactive Mining of Gene Expression Data

Jian Pei, Aidong Zhang, Daxin Jiang, 2004, VLDB.