K. Weeks

发表

Accurate SHAPE-directed RNA structure determination

D. Mathews, Katherine E Deigan, Tian W Li, 2009, Proceedings of the National Academy of Sciences.

RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE).

K. Weeks, Edward J Merino, K. Wilkinson, 2005, Journal of the American Chemical Society.

Principles for understanding the accuracy of SHAPE-directed RNA structure modeling.

D. Mathews, K. Weeks, N. Dokholyan, 2013, Biochemistry.

QuShape: rapid, accurate, and best-practices quantification of nucleic acid probing information, resolved by capillary electrophoresis.

K. Weeks, O. Favorov, F. Karabiber, 2013, RNA.

Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknots

D. Mathews, K. Weeks, Stanislav Bellaousov, 2013, Proceedings of the National Academy of Sciences.

The mechanisms of RNA SHAPE chemistry.

K. Weeks, J. Cate, J. Dunkle, 2012, Journal of the American Chemical Society.

ShapeFinder: a software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis.

Morgan C. Giddings, N. Guex, K. Weeks, 2008, RNA.

Selective 2′-hydroxyl acylation analyzed by protection from exoribonuclease (RNase-detected SHAPE) for direct analysis of covalent adducts and of nucleotide flexibility in RNA

K. Weeks, Kady-Ann Steen, Nathan A. Siegfried, 2011, Nature Protocols.

Statistical analysis of SHAPE-directed RNA secondary structure modeling.

K. Weeks, F. Ding, N. Dokholyan, 2013, Biochemistry.

Architecture and Secondary Structure of an Entire HIV-1 RNA Genome

Kristen K. Dang, K. Weeks, Kristen K Dang, 2009, Nature.

Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution

K. Weeks, Edward J Merino, K. Wilkinson, 2006, Nature Protocols.

Three-Dimensional RNA Structure Refinement by Hydroxyl Radical Probing

Christopher A. Lavender, K. Weeks, F. Ding, 2012, Nature Methods.

A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry.

K. Weeks, S. Mortimer, 2007, Journal of the American Chemical Society.

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme.

Katarzyna J Purzycka, K. Weeks, Zhichao Miao, 2017, RNA.

High-Throughput SHAPE Analysis Reveals Structures in HIV-1 Genomic RNA Strongly Conserved across Distinct Biological States

Morgan C. Giddings, N. Guex, D. Mathews, 2008, PLoS biology.

SHAPE-directed RNA secondary structure prediction.

K. Weeks, J. Low, Justin T. Low, 2010, Methods.

Sharing and archiving nucleic acid structure mapping data.

Craig L. Zirbel, R. Knight, D. Mathews, 2011, RNA.

Advances in RNA structure analysis by chemical probing.

K. Weeks, 2010, Current opinion in structural biology.

The genetic code as expressed through relationships between mRNA structure and protein function

K. Weeks, Nathan A. Siegfried, David M. Mauger, 2013, FEBS Letters.

A collapsed non-native RNA folding state

Karen L. Buchmueller, K. Weeks, A. Webb, 2000, Nature Structural Biology.

RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction.

Feng Ding, Kristian Rother, Thomas Hermann, 2012, RNA.

structure prediction : A CASP-like evaluation of RNA three-dimensional RNA-Puzzles

Christopher A. Lavender, K. Weeks, E. Westhof, 2012 .

On the significance of an RNA tertiary structure prediction.

Feng Ding, Kevin M Weeks, Nikolay V Dokholyan, 2010, RNA.

Principles for targeting RNA with drug-like small molecules

K. Weeks, Christine E. Hajdin, K. D. Warner, 2018, Nature Reviews Drug Discovery.

Multiple conformations are a conserved and regulatory feature of the RB1 5′ UTR

K. Weeks, A. Laederach, Nathaniel J. Moorman, 2015, RNA.

Van't Hoff enthalpies without baselines

K. Weeks, K M Weeks, D. M. John, 2000, Protein science : a publication of the Protein Society.

Robust and generic RNA modeling using inferred constraints: a structure for the hepatitis C virus IRES pseudoknot domain.

Feng Ding, Kevin M Weeks, Nikolay V Dokholyan, 2010, Biochemistry.

The Mrs1 Splicing Factor Binds the bI3 Group I Intron at Each of Two Tetraloop-Receptor Motifs

K. Weeks, Caia D. S. Duncan, C. D. S. Duncan, 2010, PloS one.

Photoluminescence–Voltage (PL–V) Hysteresis of Perovskite Solar Cells

K. Weeks, Zhihua Xu, Taryn De Rosia, 2017 .

Ribosome RNA assembly intermediates visualized in living cells.

K. Weeks, Jennifer L. McGinnis, 2014, Biochemistry.

Anti-cooperative assembly of the SRP19 and SRP68/72 components of the signal recognition particle.

K. Weeks, H. Fried, T. Maity, 2008, The Biochemical journal.

Functionally conserved architecture of hepatitis C virus RNA genomes

K. Weeks, S. Lemon, Michael Golden, 2015, Proceedings of the National Academy of Sciences.

Direct identification of base-paired RNA nucleotides by correlated chemical probing

K. Weeks, N. Dokholyan, A. Krokhotin, 2017, RNA.

RNA base-pairing complexity in living cells visualized by correlated chemical probing

K. Weeks, Patrick S. Irving, Samuel W. Olson, 2019, Proceedings of the National Academy of Sciences.

Direct detection of RNA modifications and structure using single-molecule nanopore sequencing

K. Weeks, W. Timp, Peter Smibert, 2020, bioRxiv.

Identifying proximal RNA interactions from cDNA-encoded crosslinks with ShapeJumper.

K. Weeks, A. Laederach, Thomas W Christy, 2021, PLoS computational biology.

Quantitative prediction of variant effects on alternative splicing in MAPT using endogenous pre-messenger RNA structure probing

D. Mathews, K. Weeks, Lela Lackey, 2022, eLife.

An RNA structure-mediated, posttranscriptional model of human α-1-antitrypsin expression

K. Weeks, Lela Lackey, A. Laederach, 2017, Proceedings of the National Academy of Sciences.

Guidelines for SHAPE Reagent Choice and Detection Strategy for RNA Structure Probing Studies.

K. Weeks, Chase A. Weidmann, Steven Busan, 2019, Biochemistry.

Facile conversion of aptamers into sensors using a 2'-ribose-linked fluorophore.

K. Weeks, Edward J Merino, Edward J. Merino, 2005, Journal of the American Chemical Society.

Fluorogenic resolution of ligand binding by a nucleic acid aptamer.

K. Weeks, Edward J Merino, Edward J. Merino, 2003, Journal of the American Chemical Society.

High-Throughput Analysis of RNA Structure and Ribonucleoprotein Assembly

K. Weeks, Jennifer L. McGinnis, Caia D. S. Duncan, 2016 .

Genomic RNA Elements Drive Phase Separation of the SARS-CoV-2 Nucleocapsid

Rachel S. G. Sealfon, Manolis Kellis, O. Troyanskaya, 2020, Molecular Cell.

Crystal structures, reactivity and inferred acylation transition states for 2'-amine substituted RNA.

Costin M. Gherghe, K. Weeks, J. Krahn, 2005, Journal of the American Chemical Society.

Global 5′-UTR RNA structure regulates translation of a SERPINA1 mRNA

K. Weeks, Lela Lackey, A. Laederach, 2022, Nucleic acids research.

Double-stranded RNA drives SARS-CoV-2 nucleocapsid protein to undergo phase separation at specific temperatures

Rachel S. G. Sealfon, O. Troyanskaya, K. Weeks, 2022, Nucleic acids research.

Structure-first identification of conserved RNA elements that regulate dengue virus genome architecture and replication

K. Weeks, M. Boerneke, S. Horner, 2022, bioRxiv.

Validating the fragment-based drug discovery strategy for targeting biological RNAs: Lead fragments specifically bind and remodel the TPP riboswitch

K. Weeks, A. Ferré-D’Amaré, Alison G. Smith, 2014 .

Double-stranded RNA drives SARS-CoV-2 nucleocapsid protein to undergo phase separation at specific temperatures

Rachel S. G. Sealfon, O. Troyanskaya, K. Weeks, 2021, bioRxiv.

Model-Free RNA Sequence and Structure Alignment Informed by SHAPE Probing Reveals a Conserved Alternate Secondary Structure for 16S rRNA

Ge Zhang, Ronny Lorenz, Ivo L. Hofacker, 2015, PLoS Comput. Biol..

SHAPE-enabled fragment-based ligand discovery for RNA

K. Weeks, A. Serganov, O. Favorov, 2022, Proceedings of the National Academy of Sciences of the United States of America.

RNA-Ligand Interactions Quantified by Surface Plasmon Resonance with Reference Subtraction.

K. Weeks, J. Arney, 2022, Biochemistry.

Accurate detection of chemical modifications in RNA by mutational profiling (MaP) with ShapeMapper 2

K. Weeks, Steven Busan, 2018, RNA.

SHAPE reveals transcript-wide interactions, complex structural domains, and protein interactions across the Xist lncRNA in living cells

Kaoru Inoue, K. Weeks, J. M. Calabrese, 2016, Proceedings of the National Academy of Sciences.

RNA binding assays for Tat-derived peptides: implications for specificity.

D. Crothers, K. Weeks, Kevin M. Weeks, 1992, Biochemistry.

Tagging DNA mismatches by selective 2'-amine acylation.

K. Weeks, D. M. John, 2000, Chemistry & biology.

Fragments of the HIV-1 Tat protein specifically bind TAR RNA.

D M Crothers, D. Crothers, T. Steitz, 1990, Science.

The cellular environment stabilizes adenine riboswitch RNA structure.

K. Weeks, Jennifer L. McGinnis, G. Pielak, 2013, Biochemistry.

Tris-borate is a poor counterion for RNA: a cautionary tale for RNA folding studies.

Karen L. Buchmueller, K. Weeks, 2004, Nucleic acids research.

Discovery of a large-scale, cell-state-responsive allosteric switch in the 7SK RNA using DANCE-MaP.

K. Weeks, D. Margolis, Anne-Marie Turner, 2022, Molecular cell.

Large-scale allosteric switch in the 7SK RNA regulates transcription in response to growth and stress

K. Weeks, D. Margolis, Anne-Marie Turner, 2021, bioRxiv.

Small structural costs for evolution from RNA to RNP-based catalysis.

K. Weeks, Ivelitza Garcia, 2003, Journal of molecular biology.

Major groove accessibility of RNA.

D. Crothers, K. Weeks, Donald M. Crothers, 1993, Science.

Functional classification of long non-coding RNAs by kmer content

Kaoru Inoue, Peter J Mucha, Kevin M Weeks, 2018, Nature Genetics.

Analysis of RNA-protein networks with RNP-MaP defines functional hubs on RNA

K. Weeks, J. M. Calabrese, Chase A. Weidmann, 2020, Nature biotechnology.

Selective 2′-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysis

Kevin M Weeks, Steven Busan, K. Weeks, 2015, Nature Protocols.

Structure-independent and quantitative ligation of single-stranded DNA.

Kevin M Weeks, Tian W Li, K. Weeks, 2006, Analytical biochemistry.

mRNA structure determines specificity of a polyQ-driven phase separation

Amy S. Gladfelter, Sua Myong, Erin M. Langdon, 2017, Science.

Detection of RNA-Protein Interactions in Living Cells with SHAPE.

K. Weeks, J. M. Calabrese, M. J. Smola, 2015, Biochemistry.

Definition of a high-affinity Gag recognition structure mediating packaging of a retroviral RNA genome

K. Weeks, Christopher W Leonard, R. Gorelick, 2010, Proceedings of the National Academy of Sciences.

Selective 2'-hydroxyl acylation analyzed by protection from exoribonuclease.

K. Weeks, Kady-Ann Steen, A. Malhotra, 2010, Journal of the American Chemical Society.

A Guanosine-Centric Mechanism for RNA Chaperone Function

Brent M. Znosko, K. Weeks, J. Lieb, 2013, Science.

Femtomole SHAPE reveals regulatory structures in the authentic XMRV RNA genome.

K. Weeks, N. Allbritton, R. Gorelick, 2011, Journal of the American Chemical Society.

Secondary Structure of the Mature Ex Virio Moloney Murine Leukemia Virus Genomic RNA Dimerization Domain

K. Weeks, Christopher W Leonard, R. Gorelick, 2009, Journal of Virology.

The SL1-SL2 (Stem-Loop) Domain Is the Primary Determinant for Stability of the Gamma Retroviral Genomic RNA Dimer*

K. Weeks, Cristina Gherghe, 2006, Journal of Biological Chemistry.

Architecture of a gamma retroviral genomic RNA dimer.

K. Weeks, Christopher S. Badorrek, 2006, Biochemistry.

Structure of an RNA switch that enforces stringent retroviral genomic RNA dimerization

Kevin M Weeks, K. Weeks, Christopher S Badorrek, 2006, Proceedings of the National Academy of Sciences.

RNA Structures Facilitate Recombination-Mediated Gene Swapping in HIV-1

K. Weeks, M. Negroni, D. Martin, 2010, Journal of Virology.

RNA recognition by Tat-derived peptides: Interaction in the major groove?

D. Crothers, K. Weeks, 1991, Cell.

RNA tertiary structure analysis by 2'-hydroxyl molecular interference.

K. Weeks, F. Ding, N. Dokholyan, 2014, Biochemistry.

Long-range architecture in a viral RNA genome.

K. Weeks, A. McPherson, D. Erie, 2013, Biochemistry.

RNA targeting by the HIV-1 Tat protein

D. Crothers, K. Weeks, 1993 .

Time-resolved RNA SHAPE chemistry.

K. Weeks, S. Mortimer, 2008, Journal of the American Chemical Society.

SHAPE-directed discovery of potent shRNA inhibitors of HIV-1.

K. Weeks, B. Berkhout, Joseph M. Watts, 2012, Molecular therapy : the journal of the American Society of Gene Therapy.

Pervasive Regulatory Functions of mRNA Structure Revealed by High-Resolution SHAPE Probing

Razvan Nutiu, Brant K. Peterson, Steven Busan, 2018, Cell.

RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP)

Steven Busan, K. Weeks, Nathan A. Siegfried, 2014, Nature Methods.

Physical and Functional Analysis of Viral RNA Genomes by SHAPE.

K. Weeks, M. Boerneke, Jeffrey E. Ehrhardt, 2019, Annual review of virology.

Specific viral RNA drives the SARS CoV-2 nucleocapsid to phase separate

Chandra L. Theesfeld, Rachel S. G. Sealfon, O. Troyanskaya, 2020, bioRxiv.

Challenge of mimicking the influences of the cellular environment on RNA structure by PEG-induced macromolecular crowding.

K. Weeks, G. Pielak, J. Tyrrell, 2015, Biochemistry.

IFNL3 mRNA structure is remodeled by a functional non-coding polymorphism associated with hepatitis C virus clearance

D. Goldstein, K. Weeks, Yi-Fan Lu, 2015, Scientific Reports.

Pervasive tertiary structure in the dengue virus RNA genome

K. Weeks, Elizabeth A. Dethoff, W. Messer, 2018, Proceedings of the National Academy of Sciences.

In-cell SHAPE reveals that free 30S ribosome subunits are in the inactive state

Christopher A. Lavender, K. Weeks, Jennifer L. McGinnis, 2015, Proceedings of the National Academy of Sciences.

In-cell RNA structure probing with SHAPE-MaP

Kevin M Weeks, K. Weeks, Matthew J Smola, 2018, Nature Protocols.

Structure-Based Alignment and Consensus Secondary Structures for Three HIV-Related RNA Genomes

Christopher A. Lavender, Kevin M. Weeks, Robert J. Gorelick, 2015, PLoS Comput. Biol..

Visualization of lncRNA and mRNA Structure Models Within the Integrative Genomics Viewer.

Kevin M Weeks, Steven Busan, K. Weeks, 2020, Methods in molecular biology.

RNP-MaP: In-cell analysis of protein interaction networks defines functional hubs in RNA

K. Weeks, J. M. Calabrese, Chase A. Weidmann, 2020, bioRxiv.

Frequency of the codon 807 mutation in the cGMP phosphodiesterase beta-subunit gene in Irish setters and other dog breeds with hereditary retinal degeneration.

K. Weeks, K. Ray, G. Acland, 1999, The Journal of heredity.

Catalysts from synthetic genetic polymers

Vitor B. Pinheiro, Piet Herdewijn, Christopher Cozens, 2014, Nature.

Comparison of SIV and HIV-1 Genomic RNA Structures Reveals Impact of Sequence Evolution on Conserved and Non-Conserved Structural Motifs

Kristen K. Dang, E. L. Potter, K. Weeks, 2013, PLoS pathogens.

Messenger RNA Structure Regulates Translation Initiation: A Mechanism Exploited from Bacteria to Humans.

K. Weeks, A. Laederach, A. M. Mustoe, 2018, Biochemistry.

Piercing the fog of the RNA structure-ome

K. Weeks, 2021, Science.

SHAPE Directed Discovery of New Functions in Large RNAs.

K. Weeks, 2021, Accounts of chemical research.

Time-resolved, single-molecule, correlated chemical probing of RNA

K. Weeks, Jeffrey E. Ehrhardt, 2020, bioRxiv.

SHAPE probing reveals human ribosomal RNAs are largely unfolded in solution.

K. Weeks, Chase A. Weidmann, Steven Busan, 2019, Biochemistry.

RNA base-pairing complexity in living cells visualized by correlated chemical probing

K. Weeks, Anthony M. Mustoe, Kevin M. Weeks, 2019, Proceedings of the National Academy of Sciences.

SHAPE Probing Reveals Human rRNAs Are Largely Unfolded in Solution

K. Weeks, Chase A. Weidmann, Steven Busan, 2019 .

Direct Mapping of Higher-Order RNA Interactions by SHAPE-JuMP.

K. Weeks, A. Laederach, N. Dokholyan, 2021, Biochemistry.

Single-molecule correlated chemical probing of RNA

Nikolay V. Dokholyan, Oleg V. Favorov, Christopher A. Lavender, 2014, Proceedings of the National Academy of Sciences.

Recruitment of intron-encoded and co-opted proteins in splicing of the bI3 group I intron RNA

M. F. White, K. Weeks, D. M. de Oliveira, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Toward global RNA structure analysis

K. Weeks, David M. Mauger, Kevin M. Weeks, 2010, Nature Biotechnology.

Lack of secondary structure characterizes the 5' ends of mammalian mitochondrial mRNAs.

K. Weeks, K. Wilkinson, L. Spremulli, 2008, RNA.

Exploring RNA structural codes with SHAPE chemistry.

K. Weeks, David M. Mauger, 2011, Accounts of chemical research.

The roles of five conserved lentiviral RNA structures in HIV-1 replication.

K. Weeks, Jianbo Chen, O. Nikolaitchik, 2018, Virology.

The RNA Domain Vc1 Regulates Downstream Gene Expression in Response to Cyclic Diguanylate in Vibrio cholerae

K. Weeks, R. Tamayo, Ankunda T. Kariisa, 2016, PloS one.

Structure modeling of RNA using sparse NMR constraints

Feng Ding, Nikolay V. Dokholyan, Arpit Tandon, 2017, Nucleic acids research.

Structure and Dynamics of the HIV-1 Frameshift Element RNA

K. Weeks, S. Butcher, R. Gorelick, 2014, Biochemistry.

Mechanics of DNA flexibility visualized by selective 2'-amine acylation at nucleotide bulges.

K. Weeks, Edward J Merino, Edward J. Merino, 2004, Journal of molecular biology.

Protein-facilitated RNA folding.

K. Weeks, 1997, Current opinion in structural biology.

Innovations in targeting RNA by fragment-based ligand discovery.

K. Weeks, Jordan T. Koehn, Simon Felder, 2023, Current opinion in structural biology.

Subsite Ligand Recognition and Cooperativity in the TPP Riboswitch: Implications for Fragment-Linking in RNA Ligand Discovery.

K. Weeks, A. Serganov, J. Aubé, 2022, ACS chemical biology.

Validating fragment-based drug discovery for biological RNAs: lead fragments bind and remodel the TPP riboswitch specifically.

K. Weeks, A. Ferré-D’Amaré, C. Abell, 2014, Chemistry & biology.

RNA secondary structure modeling at consistent high accuracy using differential SHAPE

Kevin M Weeks, K. Weeks, Christopher W Leonard, 2014, RNA.

Role of context in RNA structure: flanking sequences reconfigure CAG motif folding in huntingtin exon 1 transcripts.

K. Weeks, Steven Busan, 2013, Biochemistry.

Native-like RNA tertiary structures using a sequence-encoded cleavage agent and refinement by discrete molecular dynamics.

Feng Ding, Kevin M Weeks, Nikolay V Dokholyan, 2009, Journal of the American Chemical Society.

An Immature Retroviral RNA Genome Resembles a Kinetically Trapped Intermediate State

K. Weeks, N. Allbritton, R. Gorelick, 2014, Journal of Virology.

Functional classification of long non-coding RNAs by k-mer content

P. Mucha, K. Weeks, J. M. Calabrese, 2018, Nature Genetics.

Fingerprinting noncanonical and tertiary RNA structures by differential SHAPE reactivity.

K. Weeks, Kady-Ann Steen, Greggory M Rice, 2012, Journal of the American Chemical Society.

Catalysis of amide synthesis by RNA phosphodiester and hydroxyl groups

K. Weeks, Edward J. Merino, Stacy I. Chamberlin, 2002, Proceedings of the National Academy of Sciences of the United States of America.

RNA structure probing dash seq

K. Weeks, 2011, Proceedings of the National Academy of Sciences.

Protein-dependent transition states for ribonucleoprotein assembly.

K. Weeks, E. Westhof, A. Webb, 2001, Journal of molecular biology.

Protein facilitation of group I intron splicing by assembly of the catalytic core and the 5′ splice site domain

K. Weeks, T. Cech, 1995, Cell.

Two distinct binding modes of a protein cofactor with its target RNA.

K. Weeks, X. Zhuang, L. Nivón, 2006, Journal of molecular biology.

A collapsed state functions to self-chaperone RNA folding into a native ribonucleoprotein complex

K. Weeks, A. Webb, 2001, Nature Structural Biology.

Assembly of a Ribonucleoprotein Catalyst by Tertiary Structure Capture

K. Weeks, T. Cech, 1996, Science.

Efficient protein-facilitated splicing of the yeast mitochondrial bI5 intron.

K. Weeks, T. Cech, Thomas R. Cech, 1995, Biochemistry.

RNA flexibility in the dimerization domain of a gamma retrovirus

K. Weeks, Christopher S. Badorrek, 2005, Nature chemical biology.

Strong correlation between SHAPE chemistry and the generalized NMR order parameter (S2) in RNA.

Gabriele Varani, Costin M. Gherghe, K. Weeks, 2008, Journal of the American Chemical Society.

Distinct MUNC lncRNA structural domains regulate transcription of different promyogenic factors

Michael J. Guertin, K. Weeks, A. Dutta, 2021, bioRxiv.

Complex ligand-induced conformational changes in tRNA(Asp) revealed by single-nucleotide resolution SHAPE chemistry.

K. Weeks, K. Wilkinson, Bin Wang, 2008, Biochemistry.

Near native structure in an RNA collapsed state.

Karen L. Buchmueller, K. Weeks, 2003, Biochemistry.

Packaged and Free Satellite Tobacco Mosaic Virus (STMV) RNA Genomes Adopt Distinct Conformational States.

K. Weeks, Elizabeth A. Dethoff, Bridget C. Larman, 2017, Biochemistry.

High-Throughput Explorations of RNA Structural Modularity.

Mark A Boerneke, Kevin M Weeks, K. Weeks, 2018, Biochemistry.

Evolution from DNA to RNA recognition by the bI3 LAGLIDADG maturase

K. Weeks, Christopher W Leonard, J. Krahn, 2005, Nature Structural &Molecular Biology.

Evolution from DNA to RNA recognition by the bI 3 LAGLIDADG

K. Weeks, Christopher W Leonard, J. Krahn, 2005 .

RNA-tethered phenyl azide photocrosslinking via a short-lived indiscriminant electrophile.

Karen L. Buchmueller, K. Weeks, B. Hill, 2003, Journal of the American Chemical Society.

Slow conformational dynamics at C2'-endo nucleotides in RNA.

K. Weeks, S. Mortimer, N. Thompson, 2008, Journal of the American Chemical Society.

RNAvigate: Efficient exploration of RNA chemical probing datasets

K. Weeks, Patrick S. Irving, 2023, bioRxiv.

Single-Molecule Correlated Chemical Probing: A Revolution in RNA Structure Analysis.

K. Weeks, Chase A. Weidmann, A. M. Mustoe, 2023, Accounts of chemical research.

Single-molecule correlated chemical probing reveals large-scale structural communication in the ribosome and the mechanism of the antibiotic spectinomycin in living cells

K. Weeks, Greggory M Rice, Arnab Sengupta, 2019, PLoS biology.

C2′-endo nucleotides as molecular timers suggested by the folding of an RNA domain

K. Weeks, S. Mortimer, 2009, Proceedings of the National Academy of Sciences.

A threefold RNA-protein interface in the signal recognition particle gates native complex assembly.

K. Weeks, T. Maity, 2007, Journal of molecular biology.

Effects of Refolding on Large-Scale RNA Structure.

K. Weeks, Elizabeth A. Dethoff, 2019, Biochemistry.

High-throughput SHAPE and hydroxyl radical analysis of RNA structure and ribonucleoprotein assembly.

K. Weeks, Jennifer L. McGinnis, C. D. S. Duncan, 2009, Methods in enzymology.

RNA SHAPE chemistry reveals nonhierarchical interactions dominate equilibrium structural transitions in tRNA(Asp) transcripts.

Kevin M Weeks, K. Weeks, Edward J Merino, 2005, Journal of the American Chemical Society.

Identifying proximal RNA interactions from cDNA-encoded crosslinks with ShapeJumper

K. Weeks, A. Laederach, Catherine A Giannetti, 2021, bioRxiv.

Influence of nucleotide identity on ribose 2'-hydroxyl reactivity in RNA.

Morgan C. Giddings, Katherine E Deigan, K. Weeks, 2009, RNA.

Nonhierarchical ribonucleoprotein assembly suggests a strain-propagation model for protein-facilitated RNA folding.

K. Weeks, C. D. S. Duncan, 2010, Biochemistry.

Targeting the Oncogenic Long Non-coding RNA SLNCR1 by Blocking Its Sequence-Specific Binding to the Androgen Receptor.

K. Weeks, C. Novina, Breanne M Hatfield, 2020, Cell reports.

Visualizing induced fit in early assembly of the human signal recognition particle

K. Weeks, M. A. Rose, 2001, Nature Structural Biology.

SHAPE analysis of small RNAs and riboswitches.

K. Weeks, O. Favorov, F. Karabiber, 2014, Methods in enzymology.

Visualization of RNA structure models within the Integrative Genomics Viewer

K. Weeks, Steven Busan, 2017, RNA.

Direct Duplex Detection: An Emerging Tool in the RNA Structure Analysis Toolbox.

K. Weeks, Anthony M Mustoe, Chase A. Weidmann, 2016, Trends in biochemical sciences.

Time-resolved RNA SHAPE chemistry: quantitative RNA structure analysis in one-second snapshots and at single-nucleotide resolution

Stefanie A. Mortimer, K. Weeks, S. Mortimer, 2009, Nature Protocols.

RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction.

Christopher A. Lavender, K. Weeks, A. Serganov, 2012, RNA.

Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknots

D. Mathews, K. Weeks, Stanislav Bellaousov, 2013, Proceedings of the National Academy of Sciences.

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme.

Katarzyna J Purzycka, K. Weeks, Zhichao Miao, 2017, RNA.

mRNA structure determines specificity of a polyQ-driven phase separation

Erin M. Langdon, K. Weeks, A. Gladfelter, 2017, Science.

SHAPE probing reveals human ribosomal RNAs are largely unfolded in solution

K. Weeks, Chase A. Weidmann, Steven Busan, 2019 .

structure prediction : A CASP-like evaluation of RNA three-dimensional RNA-Puzzles

Christopher A. Lavender, K. Weeks, A. Serganov, 2012 .

Exploring RNA structural codes with SHAPE chemistry.

K. Weeks, David M. Mauger, 2011, Accounts of Chemical Research.

Review toward all RNA structures, concisely

Kevin M Weeks, K. Weeks, 2015, Biopolymers.

Role of context in RNA structure: flanking sequences reconfigure CAG motif folding in huntingtin exon 1 transcripts.

K. Weeks, Steven Busan, 2013, Biochemistry.

Secondary Structure of the Mature Ex Virio Moloney Murine Leukemia Virus Genomic RNA Dimerization Domain

K. Weeks, Christopher W Leonard, R. Gorelick, 2009, Journal of Virology.

Quantitative analysis of RNA solvent accessibility by N-silylation of guanosine.

Kevin M Weeks, K. Weeks, S. Mortimer, 2009, Biochemistry.

Strong correlation between SHAPE chemistry and the generalized NMR order parameter (S2) in RNA.

K. Weeks, G. Varani, K. Wilkinson, 2008, Journal of the American Chemical Society.

SHAPE analysis of long-range interactions reveals extensive and thermodynamically preferred misfolding in a fragile group I intron RNA.

K. Weeks, C. D. S. Duncan, 2008, Biochemistry.

Slow conformational dynamics at C2'-endo nucleotides in RNA.

K. Weeks, S. Mortimer, N. Thompson, 2008, Journal of the American Chemical Society.

Kinetic and thermodynamic framework for assembly of the six-component bI3 group I intron ribonucleoprotein catalyst.

K. Weeks, Gurminder S. Bassi, 2003, Biochemistry.

Differential helix stabilities and sites pre-organized for tertiary interactions revealed by monitoring local nucleotide flexibility in the bI5 group I intron RNA.

K. Weeks, Stacy I. Chamberlin, 2003, Biochemistry.

Mapping Local Nucleotide Flexibility by Selective Acylation of 2‘-Amine Substituted RNA

K. Weeks, Stacy I. Chamberlin, 2000 .