A. Beck

Andrew H. Beck, A. Beck, A. Sangoi, 2017, International journal of gynecological pathology : official journal of the International Society of Gynecological Pathologists.

Crowdsourcing scoring of immunohistochemistry images: Evaluating Performance of the Crowd and an Automated Computational Method

Andrew H. Beck, Humayun Irshad, Laura Collins, 2016, Scientific Reports.

Height and Body Size in Childhood, Adolescence, and Young Adulthood and Breast Cancer Risk According to Molecular Subtype in the Nurses' Health Studies

Andrew H. Beck, W. Willett, A. Beck, 2016, Cancer Prevention Research.

MicroRNA Profiling of BRCA1/2 Mutation-Carrying and Non-Mutation-Carrying High-Grade Serous Carcinomas of Ovary

Andrew H. Beck, David Huntsman, Janine Senz, 2009, PloS one.

LINC00520 is induced by Src, STAT3, and PI3K and plays a functional role in breast cancer

Andrew H. Beck, David G Hendrickson, J. Rinn, 2016, Oncotarget.

A diverse array of cancer-associated MTOR mutations are hyperactivating and can predict rapamycin sensitivity.

Andrew H. Beck, David M Sabatini, Andrew H Beck, 2014, Cancer discovery.

Clinically Relevant Molecular Subtypes in Leiomyosarcoma

Trevor Hastie, Andrew H. Beck, Xiangqian Guo, 2015, Clinical Cancer Research.

Prostate cancer-associated SPOP mutations confer resistance to BET inhibitors through stabilization of BRD4

Andrew H. Beck, M. Rubin, L. Garraway, 2017, Nature Medicine.

Morphoproteomic Characterization of Lung Squamous Cell Carcinoma Fragmentation, a Histological Marker of Increased Tumor Invasiveness.

Andrew H. Beck, Marco Stampanoni, Rafael Ballester-Ripoll, 2017, Cancer research.

EN1 is a transcriptional dependency in triple-negative breast cancer associated with brain metastasis.

Andrew H. Beck, A. Beck, F. Beca, 2019, Cancer research.

A BRCA1/2 Mutational Signature and Survival in Ovarian High-Grade Serous Carcinoma

Andrew H. Beck, A. Beck, B. Howitt, 2016, Cancer Epidemiology, Biomarkers & Prevention.

PAX8 expression reliably distinguishes pancreatic well-differentiated neuroendocrine tumors from ileal and pulmonary well-differentiated neuroendocrine tumors and pancreatic acinar cell carcinoma

Andrew H. Beck, Andrew H Beck, Robert S Ohgami, 2011, Modern Pathology.

PharmacoGx: an R package for analysis of large pharmacogenomic datasets

Andrew H. Beck, Zhaleh Safikhani, Benjamin Haibe-Kains, 2015, Bioinform..

Revisiting inconsistency in large pharmacogenomic studies

Andrew H. Beck, A. Goldenberg, John Quackenbush, 2015, bioRxiv.

Safikhani et al. reply

Andrew H. Beck, A. Goldenberg, John Quackenbush, 2016, Nature.

Digital Quantification of Gene Expression in Sequential Breast Cancer Biopsies Reveals Activation of an Immune Response

Andrew H. Beck, A. Beck, Aquila Fatima, 2013, PloS one.

Genome-wide association study identiﬁes multiple loci associated with both mammographic density and breast cancer risk

Heang-Ping Chan, Mark A. Helvie, Andrew H. Beck, 2022 .

p16 Is Superior to ProEx C in Identifying High-grade Squamous Intraepithelial Lesions (HSIL) of the Anal Canal

A. Beck, T. Longacre, C. Kong, 2013, The American journal of surgical pathology.

Gene expression profiling for the investigation of soft tissue sarcoma pathogenesis and the identification of diagnostic, prognostic, and predictive biomarkers

Andrew H. Beck, R. West, M. Rijn, 2010, Virchows Archiv.

Molecular mechanisms linking high body mass index to breast cancer etiology in post-menopausal breast tumor and tumor-adjacent tissues

Andrew H. Beck, C. Vachon, F. Couch, 2018, Breast Cancer Research and Treatment.

Analysis of stromal signatures in the tumor microenvironment of ductal carcinoma in situ

Andrew H. Beck, K. Montgomery, I. Espinosa, 2010, Breast Cancer Research and Treatment.

Characterization of c-Maf transcription factor in normal and neoplastic hematolymphoid tissue and its relevance in plasma cell neoplasia.

Andrew H. Beck, Y. Natkunam, Shuchun Zhao, 2009, American journal of clinical pathology.

Androgen receptor expression in normal breast tissue and subsequent breast cancer risk

Andrew H. Beck, A. Beck, F. Beca, 2018, npj Breast Cancer.

Breast cancer risk factors in relation to estrogen receptor, progesterone receptor, insulin-like growth factor-1 receptor, and Ki67 expression in normal breast tissue

Andrew H. Beck, W. Willett, A. Beck, 2017, npj Breast Cancer.

Assessment of Ki67 expression for breast cancer subtype classification and prognosis in the Nurses’ Health Study

A. Beck, R. Tamimi, S. Schnitt, 2017, Breast Cancer Research and Treatment.

Androgen Receptor Expression and Breast Cancer Survival: Results From the Nurses' Health Studies.

Andrew H. Beck, E. Winer, A. Beck, 2018, Journal of the National Cancer Institute.

EZH2 protein expression in normal breast epithelium and risk of breast cancer: results from the Nurses’ Health Studies

Andrew H. Beck, A. Beck, F. Beca, 2017, Breast Cancer Research.

Adult Body Size and Physical Activity in Relation to Risk of Breast Cancer According to Tumor Androgen Receptor Status

Andrew H. Beck, A. Beck, B. Rosner, 2015, Cancer Epidemiology, Biomarkers & Prevention.

Dense and Nondense Mammographic Area and Risk of Breast Cancer by Age and Tumor Characteristics

Andrew H. Beck, S. Cummings, C. Vachon, 2015, Cancer Epidemiology, Biomarkers & Prevention.

Etiologic field effect: reappraisal of the field effect concept in cancer predisposition and progression

Andrew H. Beck, A. Beck, E. Giovannucci, 2015, Modern Pathology.

Significance Analysis of Prognostic Signatures

Benjamin Haibe-Kains, Aedín C. Culhane, Andrew H. Beck, 2013, PLoS Comput. Biol..

Interdisciplinary education to integrate pathology and epidemiology: towards molecular and population-level health science.

Andrew H. Beck, A. Beck, E. Giovannucci, 2012, American journal of epidemiology.

A Panel of 3 Markers Including p16, ProExC, or HPV ISH is Optimal for Distinguishing Between Primary Endometrial and Endocervical Adenocarcinomas

A. Beck, T. Longacre, C. Kong, 2010, The American journal of surgical pathology.

The SIRT2 Deacetylase Stabilizes Slug to Control Malignancy of Basal-like Breast Cancer.

Andrew H. Beck, A. Beck, B. Glass, 2016, Cell reports.

ROR2 is a novel prognostic biomarker and a potential therapeutic target in leiomyosarcoma and gastrointestinal stromal tumour

Andrew H. Beck, R. West, M. van de Rijn, 2012, The Journal of pathology.

Computerized morphometry as an aid in determining the grade of dysplasia and progression to adenocarcinoma in Barrett's esophagus

Andrew H. Beck, Edmond Sabo, Andrew H Beck, 2006, Laboratory Investigation.

The Macrophage Colony-Stimulating Factor 1 Response Signature in Breast Carcinoma

Andrew H. Beck, Robert J. Marinelli, R. West, 2009, Clinical Cancer Research.

Enhancing reproducibility in cancer drug screening: how do we move forward?

Robert Clarke, Benjamin Haibe-Kains, Andrew H. Beck, 2014, Cancer research.

Interobserver Reproducibility in the Diagnosis of Invasive Micropapillary Carcinoma of the Urinary Tract Among Urologic Pathologists

Andrew H. Beck, Kenneth A. Iczkowski, Liang Cheng, 2010, The American journal of surgical pathology.

Molecular pathological analysis of sarcomas using paraffin‐embedded tissue: current limitations and future possibilities

Andrew H. Beck, R. West, M. Rijn, 2014, Histopathology.

Crowdsourcing image annotation for nucleus detection and segmentation in computational pathology: evaluating experts, automated methods, and the crowd.

Andrew H. Beck, H Irshad, L Montaser-Kouhsari, 2014, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.

Comparative Gene Expression Profiling of Benign and Malignant Lesions Reveals Candidate Therapeutic Compounds for Leiomyosarcoma

Andrew H. Beck, Robert B. West, Jonathan A. Fletcher, 2012, Sarcoma.

Expression of Subtype-Specific Group 1 Leiomyosarcoma Markers in a Wide Variety of Sarcomas by Gene Expression Analysis and Immunohistochemistry

Andrew H. Beck, R. West, M. van de Rijn, 2011, The American journal of surgical pathology.

The Adherens Junction Protein Afadin Is an AKT Substrate that Regulates Breast Cancer Cell Migration

Andrew H. Beck, Nicholas W. Knoblauch, A. Beck, 2013, Molecular Cancer Research.

NFAT1 promotes intratumoral neutrophil infiltration by regulating IL8 expression in breast cancer

Andrew H. Beck, A. Beck, A. Toker, 2015, Molecular oncology.

Signal Transduction The Adherens Junction Protein Afadin Is an AKT Substrate that Regulates Breast Cancer Cell Migration

Andrew H. Beck, Nicholas W. Knoblauch, A. Beck, 2014 .

Application of convolutional neural networks to breast biopsies to delineate tissue correlates of mammographic breast density

Andrew H. Beck, Gretchen L. Gierach, Jason M. Johnson, 2019, npj Breast Cancer.

Expression Quantitative Trait loci (QTL) in tumor adjacent normal breast tissue and breast tumor tissue

Andrew H. Beck, Nicholas W. Knoblauch, John Quackenbush, 2017, PloS one.

Nanoscale imaging of clinical specimens using pathology-optimized expansion microscopy

Andrew H. Beck, E. Boyden, A. Beck, 2017, Nature Biotechnology.

Features Associated with Survival Systematic Analysis of Breast Cancer Morphology Uncovers Stromal

Andrew H. Beck, Robert J. Marinelli, R. West, 2011 .

The Novel Marker GATA3 is Significantly More Sensitive Than Traditional Markers Mammaglobin and GCDFP15 for Identifying Breast Cancer in Surgical and Cytology Specimens of Metastatic and Matched Primary Tumors

Andrew H. Beck, A. Beck, A. Sangoi, 2016, Applied immunohistochemistry & molecular morphology : AIMM.

Computational pathology definitions, best practices, and recommendations for regulatory guidance: a white paper from the Digital Pathology Association

Andrew H. Beck, Liron Pantanowitz, Mark D Zarella, 2019, The Journal of pathology.

Interaction of mammographic breast density with menopausal status and postmenopausal hormone use in relation to the risk of aggressive breast cancer subtypes

Andrew H. Beck, S. Cummings, C. Vachon, 2017, Breast Cancer Research and Treatment.

The efficacy of HGAL and LMO2 in the separation of lymphomas derived from small B cells in nodal and extranodal sites, including the bone marrow.

Andrew H. Beck, I. Lossos, R. Warnke, 2011, American journal of clinical pathology.

Multifocal Epithelioid Hemangioma with Reactive Bone Formation

Jessica M Sin, A. Beck, R. Pai, 2011 .

Chromosomal copy number alterations for associations of ductal carcinoma in situ with invasive breast cancer

Andrew H. Beck, Aya A. Mitani, Robert B. West, 2015, Breast Cancer Research.

Dynamic real-time microscopy of the urinary tract using confocal laser endomicroscopy.

Andrew H. Beck, Ying Pan, Joseph C Liao, 2011, Urology.

EMDomics: a robust and powerful method for the identification of genes differentially expressed between heterogeneous classes

Andrew H. Beck, Sheida Nabavi, Daniel Schmolze, 2015, Bioinform..

The Human Genome Project and Personalized Medicine

A. Beck, M. Hefti, 2014 .

Alcohol consumption and breast tumor gene expression

Andrew H. Beck, C. Vachon, F. Couch, 2017, Breast Cancer Research.

Erratum: Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk (Nature Communications (2014) 5:5303 (DOI:10.1038/ncomms6303))

Andrew H. Beck, Gretchen L. Gierach, Kaanan P. Shah, 2015 .

Mammographic density and risk of breast cancer by age and tumor characteristics

Andrew H. Beck, Karla Kerlikowske, Bo Fan, 2013, Breast Cancer Research.

Association of H3K9me3 and H3K27me3 repressive histone marks with breast cancer subtypes in the Nurses’ Health Study

Andrew H. Beck, A. Beck, R. Tamimi, 2014, Breast Cancer Research and Treatment.

Running title: Mammographic Density Phenotypes & Breast Cancer

Andrew H. Beck, S. Cummings, C. Vachon, 2015 .

Machine learning-based identification of predictive features of the tumor micro-environment and vasculature in NSCLC patients using the IMpower150 study.

A. Khosla, J. Fridlyand, A. Beck, 2020 .

TNF-α expression, risk factors, and inflammatory exposures in ovarian cancer: evidence for an inflammatory pathway of ovarian carcinogenesis?

Andrew H. Beck, A. Beck, K. Terry, 2016, Human pathology.

The tale of TILs in breast cancer: A report from The International Immuno-Oncology Biomarker Working Group

Andrew H. Beck, Clare C. Yu, M. N. Vidya, 2021, npj Breast Cancer.

Postmenopausal mammographic breast density and subsequent breast cancer risk according to selected tissue markers

Andrew H. Beck, G. Colditz, C. Vachon, 2015, British Journal of Cancer.

Ogino et Al. Respond to "the 21st century epidemiologist".

A. Beck, E. Giovannucci, M. Sherman, 2012, American journal of epidemiology.

Predicting breast tumor proliferation from whole‐slide images: The TUPAC16 challenge

Karl Rohr, Matheus Palhares Viana, Mitko Veta, 2018, Medical Image Anal..

Safikhani et al. reply

Andrew H. Beck, A. Goldenberg, John Quackenbush, 2016, Nature.

Application of a risk-management framework for integration of stromal tumor-infiltrating lymphocytes in clinical trials

Jacqueline A. Hall, Sarah N. Dudgeon, A. Gown, 2020, npj Breast Cancer.

Real time diagnosis of bladder cancer with probe-based confocal laser endomicroscopy

Andrew H. Beck, Jen-Jane Liu, Shelly Hsiao, 2011, BiOS.

A Machine Learning Approach Enables Quantitative Measurement of Liver Histology and Disease Monitoring in NASH

A. Khosla, V. Wong, O. Carrasco-Zevallos, 2021, Hepatology.

Deep learning-based assessment of tumor-associated stroma for diagnosing breast cancer in histopathology images

Nico Karssemeijer, Andrew H. Beck, Jimmy Lin, 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017).

Drug response consistency in CCLE and CGP

A. Goldenberg, John Quackenbush, A. Beck, 2016, Nature.

Report on computational assessment of Tumor Infiltrating Lymphocytes from the International Immuno-Oncology Biomarker Working Group.

Sarah N. Dudgeon, A. Beck, T. Nielsen, 2020, NPJ breast cancer.

Continuous measurement of breast tumour hormone receptor expression: a comparison of two computational pathology platforms

Andrew H. Beck, Thomas P Ahern, Andrew H Beck, 2016, Journal of Clinical Pathology.

Systematic Analysis of Sex-Linked Molecular Alterations and Therapies in Cancer

Andrew H. Beck, A. Beck, Jonathan Ma, 2016, Scientific Reports.

Urinary Melatonin in Relation to Postmenopausal Breast Cancer Risk According to Melatonin 1 Receptor Status

Andrew H. Beck, A. Beck, S. Hankinson, 2016, Cancer Epidemiology, Biomarkers & Prevention.

Abstract PD6-04: Deep-learning based prediction of homologous recombination deficiency (hrd) status from histological features in breast cancer; a research study

James A. Diao, Wan Fung Chui, A. Khosla, 2021 .

Importance of collection in gene set enrichment analysis of drug response in cancer cell lines

Andrew H. Beck, Nehme El-Hachem, Benjamin Haibe-Kains, 2014, Scientific Reports.

Using deep convolutional neural networks to identify and classify tumor-associated stroma in diagnostic breast biopsies.

Andrew H. Beck, Gretchen L. Gierach, N. Karssemeijer, 2018, Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc.

Deep learning assessment of tumor proliferation in breast cancer histological images

Dayong Wang, Manan Shah, Manan A. Shah, 2016, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Genome-wide association studies identify four ER negative–specific breast cancer risk loci

Patrick Neven, Michael Jones, Wei Lu, 2013, Nature Genetics.