H. Chitsaz

发表

Proceedings of the 1st International Workshop on Robot Learning and Planning (RLP 2016) pdf

Nancy M. Amato, Gregory S. Chirikjian, Geoffrey A. Hollinger, 2016, ArXiv.

for Differential-Drive Mobile Robots

Devin J. Balkcom, S. LaValle, M. T. Mason, 2009 .

A Goal Keeper for Middle Size RoboCup

Vahab S. Mirrokni, Mohammad Taghi Hajiaghayi, Mansour Jamzad, 2000, RoboCup.

A Fast Vision System for Middle Size Robots in RoboCup

Vahab S. Mirrokni, Mohammad Taghi Hajiaghayi, Ehsan Chiniforooshan, 2001, RoboCup.

Geodesic Problems for Mobile Robots

S. LaValle, H. Chitsaz, 2008 .

Efficient de novo assembly of single-cell bacterial genomes from short-read data sets

P. Pevzner, G. Smith, H. Chitsaz, 2011, Nature Biotechnology.

DeePathology: Deep Multi-Task Learning for Inferring Molecular Pathology from Cancer Transcriptome

H. Chitsaz, A. Sharifi-Zarchi, B. Azarkhalili, 2018, Scientific Reports.

RoboCup-2001 Engineering Challenge Award Fast Object Detection in Middle-Size RoboCup

M. T. Hajiaghai, M. Veloso, P. Stone, 2002 .

PSB 2010 Tutorial : Computational Studies of Non-coding RNAs

P. Stadler, I. Hofacker, H. Chitsaz, 2009 .

Pan-cancer analysis of microRNA expression profiles highlights microRNAs enriched in normal body cells as effective suppressors of multiple tumor types: A study based on TCGA database

H. Chitsaz, Marzieh Ebrahimi, H. Baharvand, 2022, PloS one.

Proceedings of the 1st Workshop on Robotics Challenges and Vision (RCV2013)

J. J. Guerrero, V. Hafner, C. Yap, 2014, ArXiv.

Machine Learning and Network Analysis of Molecular Dynamics Trajectories Reveal Two Chains of Red/Ox-specific Residue Interactions in Human Protein Disulfide Isomerase

H. Chitsaz, M. H. Karimi-Jafari, A. Moosavi-Movahedi, 2017, Scientific Reports.

De novo assembly of bacterial genomes from single cells

P. Pevzner, G. Smith, H. Chitsaz, 2011, Nature biotechnology.

BPPart and BPMax: RNA-RNA Interaction Partition Function and Structure Prediction for the Base Pair Counting Model

H. Chitsaz, S. Rajopadhye, Ali Ebrahimpour-Boroojeny, 2019, 1904.01235.

The Fifth Robotic Soccer World Championships

Hamidreza Chitsaz, Fuminori Yamasaki, Vahab Mirrokni, 2002 .

Optimizing Different Angles of Venturi in Biodiesel Production Using CFD Analysis

H. Chitsaz, B. Ghobadian, M. Omidkhah, 2019 .

Heterogeneous catalytic modified process in the production of biodiesel from sunflower oil, waste cooking oil and olive oil by transesterification method.

H. Chitsaz, K. Tahvildari, P. Mozaffarinia, 2014 .

COMPUTATIONAL STUDIES OF NON-CODING RNAS – Session Introduction

P. Stadler, I. Hofacker, H. Chitsaz, 2009 .

Biodiesel Production of Capparis Spinosa Oil via Trans-Esterification Reaction by Using NaOH Catalyst and Its Pilot Synthesis Design

H. Chitsaz, K. Tahvildari, M. Omidkhah, 2016 .

Session Introduction

Hamidreza Chitsaz, Rolf Backofen, Süleyman Cenk Sahinalp, 2003, Pacific Symposium on Biocomputing.

ARYANA: Aligning Reads by Yet Another Approach

Hamidreza Chitsaz, Milad Gholami, Mehdi Sadeghi, 2014, BMC Bioinformatics.

DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanism

M. Araúzo-Bravo, H. Schöler, H. Chitsaz, 2017, BMC Genomics.

Genomewide Analysis of Clp1 Function in Transcription in Budding Yeast

H. Chitsaz, A. Ansari, S. A. Mousavi, 2017, Scientific Reports.

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

Inanç Birol, Dominique Lavenier, Hamidreza Chitsaz, 2013, GigaScience.

Exact Learning of RNA Energy Parameters from Structure

Hamidreza Chitsaz, Mohammad Aminisharifabad, H. Chitsaz, 2013, RECOMB.

The RNA Newton polytope and learnability of energy parameters

Hamidreza Chitsaz, Elmirasadat Forouzmand, H. Chitsaz, 2013, Bioinform..

Prediction of RNA-RNA interaction structure by centroids in the Boltzmann ensemble

Hamidreza Chitsaz, H. Chitsaz, 2010, 1002.1736.

A partition function algorithm for interacting nucleic acid strands

Hamidreza Chitsaz, Rolf Backofen, Süleyman Cenk Sahinalp, 2009, Bioinform..

Enrichment of ovine gonadotropes via adenovirus gene targeting enhances assessment of transcriptional changes in response to estradiol-17 beta †

Kenneth L. Jones, H. Chitsaz, C. Clay, 2019, Biology of Reproduction.

SEQuel: improving the accuracy of genome assemblies

Hamidreza Chitsaz, Christina Boucher, Pavel A. Pevzner, 2012, Bioinform..

Graph Traversal Edit Distance and Extensions

Ali Sharifi-Zarchi, Hamidreza Chitsaz, Akash Shrestha, 2020, J. Comput. Biol..

GTED: Graph Traversal Edit Distance

Hamidreza Chitsaz, Süleyman Cenk Sahinalp, Ali Sharifi-Zarchi, 2018, RECOMB.

biRNA: Fast RNA-RNA Binding Sites Prediction

Hamidreza Chitsaz, Rolf Backofen, Süleyman Cenk Sahinalp, 2009, WABI.

Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum

Hamidreza Chitsaz, Shibu Yooseph, Pavel A Pevzner, 2013, Proceedings of the National Academy of Sciences.

BPPart: RNA-RNA Interaction Partition Function in the Absence of Entropy

Sanjay V. Rajopadhye, Hamidreza Chitsaz, Ali Ebrahimpour Boroojeny, 2021, WABI.

Efficient Synergistic Single-Cell Genome Assembly

Hamidreza Chitsaz, Karsten Zengler, Harish Nagarajan, 2014, bioRxiv.

Distilled single-cell genome sequencing and de novo assembly for sparse microbial communities

Hamidreza Chitsaz, Sorin Draghici, Narjes S. Movahedi, 2013, Bioinform..

De novo co-assembly of bacterial genomes from multiple single cells

Hamidreza Chitsaz, Narjes S. Movahedi, Elmirasadat Forouzmand, 2012, 2012 IEEE International Conference on Bioinformatics and Biomedicine.

Time-optimal paths for a Dubins airplane

Steven M. LaValle, Hamid Reza Chitsaz, S. LaValle, 2007, 2007 46th IEEE Conference on Decision and Control.

Exact Pareto-optimal coordination of two translating polygonal robots on an acyclic roadmap

Jason M. O'Kane, Steven M. LaValle, Hamid Reza Chitsaz, 2004, IEEE International Conference on Robotics and Automation, 2004. Proceedings. ICRA '04. 2004.

Cell Identity Codes: Understanding Cell Identity from Gene Expression Profiles using Deep Neural Networks

Farzad Abdolhosseini, Behrooz Azarkhalili, Abbas Maazallahi, 2018, Scientific Reports.

Minimum Wheel-Rotation Paths for Differential-Drive Mobile Robots

Devin J. Balkcom, Steven M. LaValle, Matthew T. Mason, 2006, Proceedings 2006 IEEE International Conference on Robotics and Automation, 2006. ICRA 2006..

Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community

Hamidreza Chitsaz, Karsten Zengler, Harish Nagarajan, 2013, The ISME Journal.

Principal Variety Analysis

Hamidreza Chitsaz, Reza Iraji, H. Chitsaz, 2017, CoRL.

Machine Learning and Network Analysis of Molecular Dynamics Trajectories Reveal Two Chains of Red/Ox-specific Residue Interactions in Human Protein Disulfide Isomerase

H. Chitsaz, M. H. Karimi-Jafari, A. Moosavi-Movahedi, 2017, Scientific Reports.

Genomewide Analysis of Clp1 Function in Transcription in Budding Yeast

H. Chitsaz, A. Ansari, Nadra Al-Husini, 2017, Scientific Reports.

Draft genome of Dugesia japonica provides insights into conserved regulatory elements of the brain restriction gene nou-darake in planarians

H. Chitsaz, A. Fujiyama, A. Toyoda, 2018, Zoological Letters.

Proximal Stochastic AUC Maximization

Hamidreza Chitsaz, Indrakshi Ray, Majdi Khalid, 2020, 2020 International Joint Conference on Neural Networks (IJCNN).

AUC Maximization with K-hyperplane pdf

Hamidreza Chitsaz, Indrakshi Ray, Majdi Khalid, 2017, ArXiv.

DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanism

Ali Sharifi-Zarchi, Hamidreza Chitsaz, Hossein Baharvand, 2017, BMC Genomics.

SARS-CoV-2 orthologs of pathogenesis-involved small viral RNAs of SARS-CoV

H. Chitsaz, A. Boroojeny, 2020, 2007.05859.

HyDA-Vista: towards optimal guided selection of k-mer size for sequence assembly

Hamidreza Chitsaz, Christina Boucher, Seyed Basir Shariat Razavi, 2014, BMC Genomics.

Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum

P. Pevzner, J. Venter, H. Chitsaz, 2013, Proceedings of the National Academy of Sciences.

Distilled single-cell genome sequencing and de novo assembly for sparse microbial communities

Narjes S. Movahedi, H. Chitsaz, S. Drăghici, 2013, Bioinform..

Increased robustness of early embryogenesis through collective decision-making by key transcription factors

Hamidreza Chitsaz, Hossein Baharvand, Hamid Pezeshk, 2015, BMC Systems Biology.

CS 440 Project Description : RNA-RNA Interaction Prediction

H. Chitsaz, A. Boroojeny, 2019 .

SNPPhenA: a corpus for extracting ranked associations of single-nucleotide polymorphisms and phenotypes from literature

Hamidreza Chitsaz, Alberto Díaz, Behrouz Bokharaeian, 2017, Journal of Biomedical Semantics.

NuRA: Numerical Roadmap Algorithm

H. Chitsaz, R. Iraji, 2014, ArXiv.