Janez Konc

发表

An improved branch and bound algorithm for the maximum clique problem

Janez Konc, D. Janežič, 2007 .

Deep Node Ranking: an Algorithm for Structural Network Embedding and End-to-End Classification pdf

Nada Lavrac, Jan Kralj, Marko Robnik-Sikonja, 2019, ArXiv.

Insights from Ion Binding Site Network Analysis into Evolution and Functions of Proteins

Janez Konc, Blaž Škrlj, T. Kunej, 2018, Molecular informatics.

Global organization of a binding site network gives insight into evolution and structure-function relationships of proteins

Janez Konc, D. Janežič, B. Brooks, 2017, Scientific Reports.

Binding site comparison for function prediction and pharmaceutical discovery.

Janez Konc, D. Janežič, 2014, Current opinion in structural biology.

Structurally Conserved Binding Sites of Hemagglutinin as Targets for Influenza Drug and Vaccine Development

Dusanka Janezic, Muhammad Yusuf, Janez Konc, 2013, J. Chem. Inf. Model..

Discovery of new inhibitors of D-alanine:D-alanine ligase by structure-based virtual screening.

Janez Konc, D. Janežič, I. Chopra, 2008, Journal of medicinal chemistry.

Identification of Conserved Water Sites in Protein Structures for Drug Design

Janez Konc, D. Janežič, S. Gobec, 2017, J. Chem. Inf. Model..

A Branch and Bound Algorithm for Matching Protein Structures

Dusanka Janezic, Janez Konc, Janez Konc, 2007, ICANNGA.

Molecular Surface Walk

Janez Konc, D. Janežič, M. Hodošček, 2006 .

Computational Drug Repositioning by Target Hopping: A Use Case in Chagas Disease.

Janez Konc, M. Schroeder, Simone Daminelli, 2016, Current pharmaceutical design.

Inverse Molecular Docking as a Novel Approach to Study Anticarcinogenic and Anti-Neuroinflammatory Effects of Curcumin

Janez Konc, U. Bren, Veronika Furlan, 2018, Molecules.

ProBiS H2O MD Approach for Identification of Conserved Water Sites in Protein Structures for Drug Design‡

Janez Konc, D. Janežič, M. Jukič, 2020, ACS medicinal chemistry letters.

BoBER: web interface to the base of bioisosterically exchangeable replacements

Dušanka Janežič, Janez Konc, Samo Lešnik, 2017, Journal of Cheminformatics.

Selective inhibitors of aldo-keto reductases AKR1C1 and AKR1C3 discovered by virtual screening of a fragment library.

Janez Konc, D. Janežič, S. Turk, 2012, Journal of medicinal chemistry.

Role of magnesium ions in the reaction mechanism at the interface between Tm1631 protein and its DNA ligand

Janez Konc, D. Janežič, M. Hodošček, 2016, Chemistry Central Journal.

Discovery of Mycobacterium tuberculosis InhA Inhibitors by Binding Sites Comparison and Ligands Prediction.

Michael Schroeder, Feng Liu, Thierry Langer, 2016, Journal of medicinal chemistry.

Function of the D-alanine:D-alanine ligase lid loop: a molecular modeling and bioactivity study.

Janez Konc, D. Janežič, S. Turk, 2012, Journal of medicinal chemistry.

Genome-wide screening for genetic variants in polyadenylation signal (PAS) sites in mouse selection lines for fatness and leanness

Janez Konc, T. Kunej, Špela Mikec, 2022, Mammalian Genome.

ProBiS-Fold Approach for Annotation of Human Structures from the AlphaFold Database with No Corresponding Structure in the PDB to Discover New Druggable Binding Sites

Janez Konc, D. Janežič, 2022, J. Chem. Inf. Model..

Selective Toll-like receptor 7 agonists with novel chromeno[3,4-d]imidazol-4(1H)-one and 2-(trifluoromethyl)quinoline/ quinazoline-4-amine scaffolds.

Janez Konc, U. Švajger, M. Sova, 2019, European journal of medicinal chemistry.

Ellipticines and 9-acridinylamines as inhibitors of D-alanine:D-alanine ligase.

Janez Konc, D. Janežič, I. Chopra, 2011, Bioorganic & medicinal chemistry.

ENZO: A Web Tool for Derivation and Evaluation of Kinetic Models of Enzyme Catalyzed Reactions

Matej Praprotnik, Milan Hodošček, Dušanka Janežič, 2011, PloS one.

ProBiS-Dock: A Hybrid Multitemplate Homology Flexible Docking Algorithm Enabled by Protein Binding Site Comparison

Janez Konc, D. Janežič, Blaž Škrlj, 2022, J. Chem. Inf. Model..

Genetic Variations of Ultraconserved Elements in the Human Genome.

Janez Konc, J. Mattick, G. Calin, 2019, Omics : a journal of integrative biology.

Global organization of a binding site network gives insight into evolution and structure-function relationships of proteins

Janez Konc, D. Janežič, B. Brooks, 2017, Scientific Reports.

LiSiCA: A Software for Ligand-Based Virtual Screening and Its Application for the Discovery of Butyrylcholinesterase Inhibitors

Dusanka Janezic, Janez Konc, Damijan Knez, 2015, J. Chem. Inf. Model..

Parallel‐ProBiS: Fast parallel algorithm for local structural comparison of protein structures and binding sites

Dusanka Janezic, Matjaz Depolli, Roman Trobec, 2012, J. Comput. Chem..

Protein binding sites for drug design

Janez Konc, D. Janežič, 2022, Biophysical Reviews.

Binding site comparisons for target-centered drug discovery

Janez Konc, Janez Konc, 2019, Expert opinion on drug discovery.

Genetic variants of the hypoxia‐inducible factor 3 alpha subunit (Hif3a) gene in the Fat and Lean mouse selection lines

Janez Konc, T. Kunej, Špela Mikec, 2022, Molecular Biology Reports.

CaNDis: a web server for investigation of causal relationships between diseases, drugs and drug targets

Nada Lavrač, Janez Konc, Tanja Kunej, 2020, Bioinform..

A small bacteriophage protein determines the hierarchy over co-residential jumbo phage in Bacillus thuringiensis serovar israelensis

Janez Konc, M. Butala, I. Gutiérrez-Aguirre, 2022, Communications Biology.

Nonpeptidic Selective Inhibitors of the Chymotrypsin-Like (β5 i) Subunit of the Immunoproteasome.

Janez Konc, D. Janežič, I. Mlinarič-Raščan, 2016, Angewandte Chemie.

Molecular Dynamics Simulations Reveal Interactions of an IgG1 Antibody With Selected Fc Receptors

Janez Konc, D. Janežič, T. Kunej, 2021, Frontiers in Chemistry.

Discovery of Novel Potential Human Targets of Resveratrol by Inverse Molecular Docking

Urban Bren, Janez Konc, Samo Lešnik, 2019, J. Chem. Inf. Model..

CANDOCK: Chemical atomic network based hierarchical flexible docking algorithm using generalized statistical potentials

Ram Samudrala, Jonathan Fine, Gaurav Chopra, 2018, bioRxiv.

Stereoselective Activity of 1-Propargyl-4-styrylpiperidine-like Analogues That Can Discriminate between Monoamine Oxidase Isoforms A and B

Janez Konc, J. Kos, I. Mangialavori, 2020, Journal of medicinal chemistry.

ProBiS algorithm for detection of structurally similar protein binding sites by local structural alignment

Dusanka Janezic, Janez Konc, Janez Konc, 2010, Bioinform..

Protein Surface Conservation in Binding Sites

Dusanka Janezic, Nejc Carl, Janez Konc, 2008, J. Chem. Inf. Model..

ProBiS-CHARMMing: Web Interface for Prediction and Optimization of Ligands in Protein Binding Sites

Dusanka Janezic, Bernard R. Brooks, Benjamin T. Miller, 2015, J. Chem. Inf. Model..

A Set of Experimentally Validated Decoys for the Human CC Chemokine Receptor 7 (CCR7) Obtained by Virtual Screening

Janez Konc, T. Van Loy, D. Schols, 2022, Frontiers in Pharmacology.

Deep node ranking for neuro‐symbolic structural node embedding and classification

Janez Konc, Blaž Škrlj, Jan Kralj, 2019, Int. J. Intell. Syst..

Deep Node Ranking: Structural Network Embedding and End-to-End Node Classification

Jan Kralj, Janez Konc, Marko Robnik-vSikonja, 2019 .

ProBiS-Database: Precalculated Binding Site Similarities and Local Pairwise Alignments of PDB Structures

Dusanka Janezic, Janez Konc, Matej Penca, 2012, J. Chem. Inf. Model..

Loop Grafting between Similar Local Environments for Fc-Silent Antibodies

Milan Hodoscek, Janez Konc, Samo Lešnik, 2020, J. Chem. Inf. Model..

Modeling enzyme-ligand binding in drug discovery

Dusanka Janezic, Janez Konc, Samo Lesnik, 2015, Journal of Cheminformatics.

ProBiS-2012: web server and web services for detection of structurally similar binding sites in proteins

Dusanka Janezic, Janez Konc, Janez Konc, 2012, Nucleic Acids Res..

ProBiS-ligands: a web server for prediction of ligands by examination of protein binding sites

Dusanka Janezic, Janez Konc, Janez Konc, 2014, Nucleic Acids Res..

Mechanistic Insights into Side Effects of Troglitazone and Rosiglitazone Using a Novel Inverse Molecular Docking Protocol

Janez Konc, U. Bren, K. Kores, 2021, Pharmaceutics.

Exact Parallel Maximum Clique Algorithm for General and Protein Graphs

Dusanka Janezic, Matjaz Depolli, Roman Trobec, 2013, J. Chem. Inf. Model..

Phytoestrogens as inhibitors of fungal 17β-hydroxysteroid dehydrogenase

Janez Konc, Jure Stojan, Tea Lanišnik Rižner, 2005, Steroids.

Discovery of new MurA inhibitors using induced-fit simulation and docking.

Dušanka Janežič, Janez Konc, Stanislav Gobec, 2017, Bioorganic & medicinal chemistry letters.

Protein-Protein Binding Site Prediction by Local Structural Alignment

Dusanka Janezic, Nejc Carl, Janez Konc, 2010, J. Chem. Inf. Model..

ProBiS tools (algorithm, database, and web servers) for predicting and modeling of biologically interesting proteins.

Janez Konc, Dušanka Janežič, Janez Konc, 2017, Progress in biophysics and molecular biology.

Molecular dynamics to enhance structure-based virtual screening on cathepsin B

Dusanka Janezic, Milan Hodoscek, Samo Turk, 2015, Journal of Computer-Aided Molecular Design.

Selective inhibitors of aldo-keto reductases AKR1C1 and AKR1C3 discovered by virtual screening of a fragment library.

Janez Konc, D. Janežič, S. Turk, 2012, Journal of medicinal chemistry.

Nonpeptidic Selective Inhibitors of the Chymotrypsin-Like (β5 i) Subunit of the Immunoproteasome.

Janez Konc, D. Janežič, I. Mlinarič-Raščan, 2016, Angewandte Chemie.

ProBiS: a web server for detection of structurally similar protein binding sites

Dusanka Janezic, Janez Konc, Janez Konc, 2010, Nucleic Acids Res..

Ligand-based virtual screening interface between PyMOL and LiSiCA

Dusanka Janezic, Janez Konc, Athira Dilip, 2016, Journal of Cheminformatics.

Ultra-high resolution X-ray structure of orthorhombic bovine pancreatic Ribonuclease A at 100K

Carina M. C. Lobley, Janez Konc, J. Cooper, 2023, BMC Chemistry.

Whole genome sequencing of mouse lines divergently selected for fatness (FLI) and leanness (FHI) revealed several genetic variants as candidates for novel obesity genes

Janez Konc, Špela Mikec, S. Atanur, 2024, Genes & genomics.