B. Avants

发表

Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge

Brian B. Avants, D. Louis Collins, Nikos Paragios, 2011, IEEE Transactions on Medical Imaging.

Geodesic estimation for large deformation anatomical shape averaging and interpolation

J. Gee, B. Avants, 2004, NeuroImage.

Neuroinformatics for Genome-Wide 3-D Gene Expression Mapping in the Mouse Brain

Allan R. Jones, L. Ng, C. Lau, 2007, TCBB.

3D Mouse Brain Reconstruction from Histology Using a Coarse-to-Fine Approach

Brian B. Avants, Paul A. Yushkevich, James C. Gee, 2006, WBIR.

The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)

Brian B. Avants, D. Louis Collins, Hervé Delingette, 2015, IEEE Transactions on Medical Imaging.

Ventilation‐based segmentation of the lungs using hyperpolarized 3He MRI

J. Gee, N. Tustison, B. Avants, 2011, Journal of magnetic resonance imaging : JMRI.

Logical circularity in voxel‐based analysis: Normalization strategy may induce statistical bias

J. Gee, N. Tustison, B. Avants, 2014, Human brain mapping.

A reproducible evaluation of ANTs similarity metric performance in brain image registration

Arno Klein, Brian B. Avants, James C. Gee, 2011, NeuroImage.

Early Stress Is Associated with Alterations in the Orbitofrontal Cortex: A Tensor-Based Morphometry Investigation of Brain Structure and Behavioral Risk

J. Gee, B. Avants, R. Davidson, 2010, The Journal of Neuroscience.

Multi-start Method with Prior Learning for Image Registration

Brian B. Avants, James C. Gee, Gang Song, 2007, 2007 IEEE 11th International Conference on Computer Vision.

Automated segmentation of chronic stroke lesions using LINDA: Lesion identification with neighborhood data analysis

Brian Avants, Nicholas Tustison, Myrna F Schwartz, 2016, Human brain mapping.

Altered Resting Cerebral Blood Flow in Adolescents With in Utero Cocaine Exposure Revealed by Perfusion Functional MRI

Hengyi Rao, Marc Korczykowski, Brian B Avants, 2007, Pediatrics.

A population level atlas of Mus musculus craniofacial skeleton and automated image‐based shape analysis

N. Tustison, B. Avants, A. Maga, 2017, Journal of anatomy.

Reversal of the concreteness effect in semantic dementia

Michael F. Bonner, Lauren L. Richmond, B. Avants, 2009, Cognitive neuropsychology.

High density three-dimensional localization microscopy across large volumes

Wesley R. Legant, B. Avants, D. Milkie, 2016, Nature Methods.

The Insight ToolKit image registration framework

J. Gee, G. Song, N. Tustison, 2014, Front. Neuroinform..

Advanced Normalization Tools (ANTs)

Hans J. Johnson, N. Tustison, B. Avants, 2020 .

N4ITK: Improved N3 bias correction with robust B-spline approximation

J. Gee, N. Tustison, B. Avants, 2010, IEEE ISBI 2010.

Multivariate MR biomarkers better predict cognitive dysfunction in mouse models of Alzheimer's disease.

Natalie A. Delpratt, B. Avants, W. Wetsel, 2018, Magnetic resonance imaging.

Impaired action knowledge in amyotrophic lateral sclerosis

B. Avants, M. Grossman, L. McCluskey, 2008, Neurology.

Speech errors in progressive non-fluent aphasia

J. Gee, B. Avants, M. Grossman, 2010, Brain and Language.

Efstathios D. Gennatas, H. Hakonarson, B. Avants, 2017, The Journal of Neuroscience.

Longitudinal reproducibility and accuracy of pseudo-continuous arterial spin-labeled perfusion MR imaging in typically developing children.

B. Avants, J. Duda, J. Detre, 2012, Radiology.

Associations between children's socioeconomic status and prefrontal cortical thickness.

Jeffrey T Duda, Brian B Avants, Martha J Farah, 2013, Developmental science.

Relation of Childhood Home Environment to Cortical Thickness in Late Adolescence: Specificity of Experience and Timing

Daniel A. Hackman, M. Farah, B. Avants, 2015, PloS one.

Effect of socioeconomic status (SES) disparity on neural development in female African-American infants at age 1 month.

M. Farah, B. Avants, M. Ashtari, 2016, Developmental science.

Structural Variations in Prefrontal Cortex Mediate the Relationship between Early Childhood Stress and Spatial Working Memory

James C Gee, Brian B Avants, Richard J Davidson, 2012, The Journal of Neuroscience.

Neuroanatomy of Apathy and Disinhibition in Frontotemporal Lobar Degeneration

Brian Avants, Murray Grossman, David J. Libon, 2009, Dementia and Geriatric Cognitive Disorders.

The power of neuroimaging biomarkers for screening frontotemporal dementia

L. Ungar, B. Avants, J. Trojanowski, 2014, Human brain mapping.

A High-Resolution Computational Atlas of the Human Hippocampus from Postmortem Magnetic Resonance Imaging at 9 . 4 Tesla

Brian B. Avants, Paul A. Yushkevich, James C. Gee, 2008 .

The pediatric template of brain perfusion

Mayank A. Jog, Emily Kilroy, Kate Krasileva, 2015, Scientific Data.

Medical Image Computing and Computer-Assisted Intervention Multivariate Analysis of Structural and Diffusi Imaging in Traumatic Brain Injur 1

J. Gee, B. Avants, J. Duda, 2008 .

Hierarchical organization of scripts: converging evidence from FMRI and frontotemporal degeneration.

Michael F. Bonner, J. Gee, B. Avants, 2010, Cerebral cortex.

Structure specific analysis of the hippocampus in temporal lobe epilepsy

John Pluta, Marc Korczykowski, Sandhitsu R. Das, 2009, Hippocampus.

Enhanced estimations of post‐stroke aphasia severity using stacked multimodal predictions

Brian B. Avants, Myrna F. Schwartz, John D. Medaglia, 2017, Human brain mapping.

Methodological considerations in longitudinal morphometry of traumatic brain injury

J. Gee, B. Avants, J. Whyte, 2012, Front. Hum. Neurosci..

Spatial normalization of injured brains for neuroimaging research : An illustrative introduction of available options

Brian Avants, Junghoon Kim, John Whyte, 2009 .

Reproducibility of functional network metrics and network structure: A comparison of task-related BOLD, resting ASL with BOLD contrast, and resting cerebral blood flow

B. Avants, S. Thompson-Schill, J. Detre, 2013, Cognitive, affective & behavioral neuroscience.

White matter hyperintensities are more highly associated with preclinical Alzheimer's disease than imaging and cognitive markers of neurodegeneration

Brian B. Avants, Christos Davatzikos, James C. Gee, 2016, Alzheimer's & dementia.

White matter imaging helps dissociate tau from TDP-43 in frontotemporal lobar degeneration

B. Avants, J. Trojanowski, M. Grossman, 2013, Journal of Neurology, Neurosurgery & Psychiatry.

Can MRI screen for CSF biomarkers in neurodegenerative disease?

B. Avants, L. Shaw, M. Grossman, 2013, Neurology.

Neuropsychological Testing Predicts Cerebrospinal Fluid Amyloid-β in Mild Cognitive Impairment.

J. Gee, B. Avants, S. Arnold, 2015, Journal of Alzheimer's disease : JAD.

Effect of Socioeconomic Status (SES) Disparity on Neural Development in Female African-American Infants at 1 Month

M. Farah, B. Avants, M. Ashtari, 2020 .

Amyloid beta–positive subjects exhibit longitudinal network-specific reductions in spontaneous brain activity

B. Avants, R. Hutchison, P. Chiao, 2019, Neurobiology of Aging.

Functional and Structural Neuroimaging Correlates of Repetitive Low-Level Blast Exposure in Career Breachers

Peter B. Walker, N. Tustison, B. Avants, 2020, Journal of neurotrauma.

Arterial spin labeling perfusion predicts longitudinal decline in semantic variant primary progressive aphasia

Benjamin M. Kandel, J. Gee, B. Avants, 2016, Journal of Neurology.

A Digital Atlas of the Dog Brain

Brian B. Avants, James C. Gee, Geoffrey K. Aguirre, 2012, PloS one.

Non-Rigid Image Registration

Brian B. Avants, James C. Gee, Jeffrey T. Duda, 2004 .

A semi-automated solution for increasing the reliability of manually defined visual area boundaries

Brian B. Avants, James C. Gee, David H. Brainard, 2010 .

Regional resting cerebral blood flow alterations in chronic diffuse traumatic brain injury: An arterial spin labeling perfusion fMRI study

B. Avants, J. Detre, J. Whyte, 2009, NeuroImage.

Predicting the laterality of temporal lobe epilepsy from PET, MRI, and DTI: A multimodal study

Brian Avants, Xiaosong He, Ashwini Sharan, 2015, NeuroImage: Clinical.

Three-Dimensional Interactive Vascular Postprocessing Techniques: Industrial Perspective

Brian B. Avants, Dorin Comaniciu, Huseyin Tek, 2003 .

Publisher Correction: Similarity-driven multi-view embeddings from high-dimensional biomedical data

Brian B. Avants, Nicholas J. Tustison, James R. Stone, 2021 .

Advanced Normalization Tools: V1.0

G. Song, N. Tustison, B. Avants, 2009, The Insight Journal.

Atypical cortical connectivity and visuospatial cognitive impairments are related in children with chromosome 22q11.2 deletion syndrome

Hui Zhang, Brian Avants, James C Gee, 2008, Behavioral and Brain Functions.

Longitudinal cortical atrophy in amyotrophic lateral sclerosis with frontotemporal dementia.

B. Avants, M. Grossman, L. McCluskey, 2009, Archives of neurology.

Application of Aligned-UMAP to longitudinal biomedical studies

M. Nalls, H. Iwaki, Anant Dadu, 2022, bioRxiv.

ANTsX neuroimaging-derived structural phenotypes of UK Biobank

J. Gee, N. Tustison, B. Avants, 2023, medRxiv.

Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain

Brian B. Avants, James C. Gee, Charles L. Epstein, 2008, Medical Image Anal..

Genetic and neuroanatomic associations in sporadic frontotemporal lobar degeneration

Brian B. Avants, Philip A. Cook, Murray Grossman, 2014, Neurobiology of Aging.

Robust Automated Amygdala Segmentation via Multi-Atlas Diffeomorphic Registration

Brian B. Avants, Paul A. Yushkevich, Jamie L. Hanson, 2012, Front. Neurosci..

Image‐ versus histogram‐based considerations in semantic segmentation of pulmonary hyperpolarized gas images

J. Gee, N. Tustison, B. Avants, 2021, Magnetic Resonance in Medicine.

Image- vs. histogram-based considerations in semantic segmentation of pulmonary hyperpolarized gas images

J. Gee, N. Tustison, B. Avants, 2021, medRxiv.

Eigenanatomy Improves Detection Power for Longitudinal Cortical Change

Brian B. Avants, James C. Gee, Philip A. Cook, 2012, MICCAI.

An Open Source Multivariate Framework for n-Tissue Segmentation with Evaluation on Public Data

Brian B. Avants, James C. Gee, Nicholas J. Tustison, 2011, Neuroinformatics.

Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration

Arno Klein, Brian B. Avants, D. Louis Collins, 2009, NeuroImage.

Integrated Graph Cuts for Brain MRI Segmentation

Brian B. Avants, Zhuang Song, James C. Gee, 2006, MICCAI.

Adaptive graph cuts with tissue priors for brain MRI segmentation

Brian B. Avants, Zhuang Song, James C. Gee, 2006, 3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro, 2006..

Explicit B-spline regularization in diffeomorphic image registration

Brian B. Avants, Nicholas J. Tustison, N. Tustison, 2013, Front. Neuroinform..

Directly Manipulated Free-Form Deformation Image Registration

Brian B. Avants, James C. Gee, Nicholas J. Tustison, 2009, IEEE Transactions on Image Processing.

Improved FFD B-Spline Image Registration

Brian B. Avants, James C. Gee, Nicholas J. Tustison, 2007, 2007 IEEE 11th International Conference on Computer Vision.

N. Tustison, B. Avants, J. Stone, 2020, Nature Computational Science.

Lagrangian frame diffeomorphic image registration: Morphometric comparison of human and chimpanzee cortex

Brian B. Avants, James C. Gee, P. Thomas Schoenemann, 2006, Medical Image Anal..

A learning-based wrapper method to correct systematic errors in automatic image segmentation: Consistently improved performance in hippocampus, cortex and brain segmentation

Brian B. Avants, Paul A. Yushkevich, Hongzhi Wang, 2011, NeuroImage.

N4ITK: Improved N3 Bias Correction

Brian B. Avants, Paul A. Yushkevich, James C. Gee, 2010, IEEE Transactions on Medical Imaging.

Dementia induces correlated reductions in white matter integrity and cortical thickness: A multivariate neuroimaging study with sparse canonical correlation analysis

Brian B. Avants, James C. Gee, Lyle H. Ungar, 2010, NeuroImage.

Structural consequences of diffuse traumatic brain injury: A large deformation tensor-based morphometry study

Brian B. Avants, James C. Gee, John A. Detre, 2008, NeuroImage.

Registration based cortical thickness measurement

Brian B. Avants, James C. Gee, Murray Grossman, 2009, NeuroImage.

High-Dimensional Spatial Normalization of Diffusion Tensor Images Improves the Detection of White Matter Differences: An Example Study Using Amyotrophic Lateral Sclerosis

Brian B. Avants, Paul A. Yushkevich, James C. Gee, 2007, IEEE Transactions on Medical Imaging.

Sparse canonical correlation analysis relates network-level atrophy to multivariate cognitive measures in a neurodegenerative population

Brian B. Avants, Anjan Chatterjee, Murray Grossman, 2014, NeuroImage.

Large-scale evaluation of ANTs and FreeSurfer cortical thickness measurements

Arno Klein, Brian B. Avants, James C. Gee, 2014, NeuroImage.

Evaluation of volume-based and surface-based brain image registration methods

Satrajit S. Ghosh, Arno Klein, Brian B. Avants, 2010, NeuroImage.

Longitudinal Mapping of Cortical Thickness Measurements: An Alzheimer's Disease Neuroimaging Initiative-Based Evaluation Study.

Daniel L Gillen, Zachariah M. Reagh, Jeffrey T Duda, 2019, Journal of Alzheimer's disease : JAD.

Quantitative mouse brain phenotyping based on single and multispectral MR protocols

Brian B. Avants, G. Allan Johnson, Alexandra Badea, 2012, NeuroImage.

Analyzing Effects of Intra-Uterine Cocaine Exposure on Adolescent Brain Structure with Symmetric Diffeomorphisms

Brian B. Avants, James C. Gee, Charles L. Epstein, 2006, 2006 Conference on Computer Vision and Pattern Recognition Workshop (CVPRW'06).

Medial temporal structures and memory functions in adolescents with heavy cannabis use.

Brian Avants, Manzar Ashtari, Laura Cyckowski, 2011, Journal of psychiatric research.

The ANTsX ecosystem for quantitative biological and medical imaging

Gabriel A. Devenyi, J. Gee, N. Tustison, 2021, Scientific Reports.

Neuroconductor: an R platform for medical imaging analysis

Brian Avants, Jonathan D Clayden, John Muschelli, 2019, Biostatistics.

Multivariate Normalization with Symmetric Diffeomorphisms for Multivariate Studies

Brian B. Avants, James C. Gee, Hui Zhang, 2007, MICCAI.

Anatomy-Based Visualizations of Diffusion Tensor Images of Brain White Matter

Brian B. Avants, Paul A. Yushkevich, James C. Gee, 2006, Visualization and Processing of Tensor Fields.

An Automated Approach to Connectivity-Based Partitioning of Brain Structures

Brian B. Avants, Paul A. Yushkevich, James C. Gee, 2005, MICCAI.

Convolutional Neural Networks for Rapid and Simultaneous Brain Extraction and Tissue Segmentation

Brian B. Avants, Nicholas C. Cullen, B. Avants, 2018 .

StructuralVariationsinPrefrontalCortexMediatethe RelationshipbetweenEarlyChildhoodStressandSpatial WorkingMemory

B. Avants, 2012 .

Predicting the laterality of temporal lobe epilepsy fromPET,MRI, andDTI: A multimodal study Predicting temporal lobe epilepsy laterality

B. Avants, A. Sharan, S. Mintzer, 2015 .

The optimal template effect in hippocampus studies of diseased populations

Brian B. Avants, Paul A. Yushkevich, James C. Gee, 2010, NeuroImage.

Early parental care is important for hippocampal maturation: Evidence from brain morphology in humans

Brian B. Avants, James C. Gee, John A. Detre, 2010, NeuroImage.

Multivariate examination of brain abnormality using both structural and functional MRI

Dinggang Shen, Brian B. Avants, James C. Gee, 2007, NeuroImage.

The ANTs Longitudinal Cortical Thickness Pipeline

Brian B. Avants, Nicholas J. Tustison, Philip A. Cook, 2017, bioRxiv.

Predicting Cognitive Data from Medical Images Using Sparse Linear Regression

Brian B. Avants, James C. Gee, Benjamin M. Kandel, 2013, IPMI.

Nearly automatic segmentation of hippocampal subfields in in vivo focal T2-weighted MRI

Michael Weiner, Brian B. Avants, Paul A. Yushkevich, 2010, NeuroImage.

A Unified Image Registration Framework for ITK

Brian B. Avants, James C. Gee, Gang Song, 2012, WBIR.

MRI-based biomarkers from hippocampal subfields: Advances in automatic labeling, longitudinal atrophy estimation and postmortem anatomical atlas

B. Avants, S. Mueller, M. Weiner, 2011, Alzheimer's & Dementia.

Improved accuracy of lesion to symptom mapping with multivariate sparse canonical correlations

Brian Avants, John D. Medaglia, H. Branch Coslett, 2017, Neuropsychologia.

Measuring longitudinal change in the hippocampal formation from in vivo high-resolution T2-weighted MRI

Michael Weiner, Brian B. Avants, Paul A. Yushkevich, 2012, NeuroImage.

A high-resolution computational atlas of the human hippocampus from postmortem magnetic resonance imaging at 9.4 T

Brian B. Avants, Paul A. Yushkevich, James C. Gee, 2009, NeuroImage.

Bias in estimation of hippocampal atrophy using deformation-based morphometry arises from asymmetric global normalization: An illustration in ADNI 3 T MRI data

Brian B. Avants, Paul A. Yushkevich, John Pluta, 2010, NeuroImage.

Evaluation of automatic neonatal brain segmentation algorithms: The NeoBrainS12 challenge

Brian B. Avants, Max A. Viergever, Daniel Rueckert, 2015, Medical Image Anal..

Non-fluent speech in frontotemporal lobar degeneration

Brian Avants, Murray Grossman, Corey McMillan, 2009, Journal of Neurolinguistics.

The role of ventral medial prefrontal cortex in social decisions: Converging evidence from fMRI and frontotemporal lobar degeneration

James C. Gee, Brian Avants, Paul J. Eslinger, 2010, Neuropsychologia.

Eigenanatomy: sparse dimensionality reduction for multi-modal medical image analysis.

Danny J. J. Wang, James C Gee, Benjamin M. Kandel, 2015, Methods.

Subject-specific functional parcellation via Prior Based Eigenanatomy

Brian B. Avants, James C. Gee, Lyle H. Ungar, 2014, NeuroImage.

Deficits in concept formation in amyotrophic lateral sclerosis.

B. Avants, M. Grossman, A. Boller, 2012, Neuropsychology.

Some is not enough: Quantifier comprehension in corticobasal syndrome and behavioral variant frontotemporal dementia

Brian Avants, Robin Clark, Murray Grossman, 2011, Neuropsychologia.

Why are patients with progressive nonfluent aphasia nonfluent?

J. Gee, B. Avants, M. Grossman, 2010, Neurology.

Convolutional Neural Networks with Template-Based Data Augmentation for Functional Lung Image Quantification.

Xue Feng, Brian B. Avants, Kun Qing, 2019, Academic radiology.

Optimal Symmetric Multimodal Templates and Concatenated Random Forests for Supervised Brain Tumor Segmentation (Simplified) with ANTsR

J. Gee, N. Tustison, B. Avants, 2015, Neuroinformatics.

Optimal Symmetric Multimodal Templates and Concatenated Random Forests for Supervised Brain Tumor Segmentation (Simplified) with ANTsR

Brian B. Avants, James C. Gee, Nicholas J. Tustison, 2014, Neuroinformatics.

Sentence processing in Lewy body spectrum disorder: The role of working memory

B. Avants, M. Grossman, A. Siderowf, 2012, Brain and Cognition.

Small Animal Multivariate Brain Analysis (SAMBA) – a High Throughput Pipeline with a Validation Framework

G Allan Johnson, James O McNamara, Alexandra Badea, 2018, Neuroinformatics.

Histology-derived volumetric annotation of the human hippocampal subfields in postmortem MRI

Brian B. Avants, Paul A. Yushkevich, James C. Gee, 2014, NeuroImage.

Learning from open source software projects to improve scientific review

Satrajit S. Ghosh, K. Millman, B. Avants, 2012, Front. Comput. Neurosci..

Impact of Reference and Target Region Selection on Amyloid PET SUV Ratios in the Phase 1b PRIME Study of Aducanumab

Brian Avants, Alex P. Zijdenbos, Robert Koeppe, 2019, The Journal of Nuclear Medicine.

Small Animal Multivariate Brain Analysis (SAMBA) – a High Throughput Pipeline with a Validation Framework

James J. Cook, Natalie A. Delpratt, B. Avants, 2017, Neuroinformatics.

Relating brain anatomy and cognitive ability using a multivariate multimodal framework

Brian B. Avants, James C. Gee, Philip A. Cook, 2014, NeuroImage.

Neuroinformatics for Genome-Wide 3-D Gene Expression Mapping in the Mouse Brain

Brian B. Avants, Paul A. Yushkevich, James C. Gee, 2007, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Canine and Human Visual Cortex Intact and Responsive Despite Early Retinal Blindness from RPE65 Mutation

Marc Korczykowski, James C Gee, David H Brainard, 2007, PLoS medicine.

Resting cerebral blood flow alterations in chronic traumatic brain injury: an arterial spin labeling perfusion FMRI study.

Brian Avants, Junghoon Kim, James C Gee, 2010, Journal of neurotrauma.

Spatiotemporal Normalization for Longitudinal Analysis of Gray Matter Atrophy in Frontotemporal Dementia

Brian B. Avants, James C. Gee, Murray Grossman, 2007, MICCAI.

Single-Subject Structural Networks with Closed-Form Rotation Invariant Matching Improve Power in Developmental Studies of the Cortex

Brian B. Avants, James C. Gee, Danny J. J. Wang, 2014, MICCAI.

Effects of heavy in utero cocaine exposure on adolescent caudate morphology.

Hengyi Rao, James C Gee, Brian B Avants, 2007, Pediatric neurology.

Decomposing cerebral blood flow MRI into functional and structural components: A non-local approach based on prediction

Brian B. Avants, James C. Gee, John A. Detre, 2015, NeuroImage.

Characterization of sexual dimorphism in the human corpus callosum

Brian Avants, James Gee, Abraham Dubb, 2003, NeuroImage.

Standing on the Shoulders of Giants: Improving Medical Image Segmentation via Bias Correction

Michael Weiner, Brian B. Avants, Paul A. Yushkevich, 2010, MICCAI.

Associations between socioeconomic status and cortical thickness in prefrontal cortical subregions

M. Farah, B. Avants, J. Duda, 2012 .

Multivariate analysis of structural and diffusion imaging in traumatic brain injury.

Brian Avants, Hui Zhang, Junghoon Kim, 2008, Academic radiology.

Estimation of perfusion and arterial transit time in myocardium using free‐breathing myocardial arterial spin labeling with navigator‐echo

Sven Zuehlsdorff, Danny J J Wang, Brian B Avants, 2010, Magnetic resonance in medicine.

Reproducibility of functional network metrics and network structure: A comparison of task-related BOLD, resting ASL with BOLD contrast, and resting cerebral blood flow

B. Avants, S. Thompson-Schill, J. Detre, 2013, Cognitive, affective & behavioral neuroscience.

EarlyStressIsAssociatedwithAlterationsinthe OrbitofrontalCortex:ATensor-BasedMorphometry InvestigationofBrainStructureandBehavioralRisk

B. Avants, 2010 .

Sparse Unbiased Analysis of Anatomical Variance in Longitudinal Imaging

Brian B. Avants, James C. Gee, Yuanjie Zheng, 2010, MICCAI.

Geodesic Image Interpolation: Parameterizing and Interpolating Spatiotemporal Images

Brian B. Avants, James C. Gee, Charles L. Epstein, 2005, VLSM.

Instrumentation bias in the use and evaluation of scientific software: recommendations for reproducible practices in the computational sciences

Satrajit S. Ghosh, Arno Klein, Brian B. Avants, 2013, Front. Neurosci..

The ANTs cortical thickness processing pipeline

Brian B. Avants, James C. Gee, Nicholas J. Tustison, 2013, Medical Imaging.

Automatic Clustering and Thickness Measurement of Anatomical Variants of the Human Perirhinal Cortex

Brian B. Avants, Paul A. Yushkevich, Hongzhi Wang, 2014, MICCAI.

Regional and Hemispheric Variation in Cortical Thickness in Chimpanzees (Pan troglodytes)

Brian B. Avants, William D. Hopkins, B. Avants, 2013, The Journal of Neuroscience.

4-D segmentation and normalization of 3He MR images for intrasubject assessment of ventilated lung volumes

Brian B. Avants, Nicholas J. Tustison, John P. Mugler, 2012, Medical Imaging.

Topological Well-Composedness and Glamorous Glue: A Digital Gluing Algorithm for Topologically Constrained Front Propagation

Brian B. Avants, James C. Gee, Nicholas J. Tustison, 2011, IEEE Transactions on Image Processing.

Escher's Ants as Metaphor: Topological Marching for the Well-Composed, Genus Zero Crowd

N. Tustison, B. Avants, M. Siqueira, 2010, The Insight Journal.

Practical applications of machine learning in imaging trials

Brian Avants, Ali Ghayoor, Elliot Greenblatt, 2021, BiOS.

Hierarchy‐guided neural network for species classification

A. Karpatne, B. Avants, H. Bart, 2021, Methods in Ecology and Evolution.

Hierarchy-guided Neural Networks for Species Classification

A. Karpatne, B. Avants, H. Bart, 2021, bioRxiv.

Multivariate analysis of thalamo-cortical connectivity loss in TBI

Brian B. Avants, James C. Gee, Hui Zhang, 2008, 2008 IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops.

Building an atlas of hippocampal subfields using postmortem MRI

Brian B. Avants, Paul A. Yushkevich, James C. Gee, 2008, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

An HPC Pipeline with Validation Framework for Small Animal Multivariate Brain Analysis (SAMBA) pdf

Brian B. Avants, Bin Gu, G. Allan Johnson, 2017, ArXiv.

Small Animal Multivariate Brain Analysis (SAMBA): A High Throughput Pipeline with a Validation Framework

Natalie A. Delpratt, B. Avants, J. McNamara, 2017 .

SYMMETRIC SHAPE AVERAGING IN THE DIFFEOMORPHIC SPACE

Brian B. Avants, James C. Gee, Charles L. Epstein, 2007, 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Symmetric Diffeomorphic Image Registration: Evaluating Automated Labeling of Elderly and Neurodegenerative Cortex and Frontal Lobe

Brian B. Avants, James C. Gee, Murray Grossman, 2006, WBIR.

Reconstruction of the human hippocampus in 3D from histology and high-resolution ex-vivo MRI

Brian B. Avants, Paul A. Yushkevich, James C. Gee, 2012, 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI).

Learning image-based spatial transformations via convolutional neural networks: A review.

James C Gee, Nicholas J Tustison, Brian B Avants, 2019, Magnetic resonance imaging.

ANTsX: A dynamic ecosystem for quantitative biological and medical imaging

Gabriel A. Devenyi, N. J. Tustison, P. A. Cook, 2020, medRxiv.

Relating High-Dimensional Structural Networks to Resting Functional Connectivity with Sparse Canonical Correlation Analysis for Neuroimaging

Brian B. Avants, B. Avants, 2018 .

Nearly automatic segmentation of hippocampal subfields in in vivo focal T2-weighted MRI

B. Avants, S. Mueller, M. Weiner, 2010, NeuroImage.

Multi-template analysis of human perirhinal cortex in brain MRI: Explicitly accounting for anatomical variability

Hongzhi Wang, Long Xie, John B. Pluta, 2017, NeuroImage.

Shape Characterization of the Corpus Callosum in Schizophrenia Using Template Deformation

Brian B. Avants, James C. Gee, Ruben C. Gur, 2002, MICCAI.

Reproducibility of functional network metrics and network structure: A comparison of task-related BOLD, resting ASL with BOLD contrast, and resting cerebral blood flow

B. Avants, S. Thompson-Schill, J. Detre, 2013, Cognitive, Affective, & Behavioral Neuroscience.

Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration

R. Woods, G. Christensen, J. Ashburner, 2009, NeuroImage.

Convolutional Neural Networks with Template-Based Data Augmentation for Functional Lung Image Quantification.

J. Gee, N. Tustison, B. Avants, 2019, Academic radiology.

Histology-derived volumetric annotation of the human hippocampal subfields in postmortem MRI

J. Gee, B. Avants, J. Pluta, 2014, NeuroImage.

Evaluation of 14 Nonlinear Deformation Algorithms Applied to Human Brain Mri Registration

B. Avants, B. Ardekani, R. Parsey, 2022 .

Validation of plaster endocast morphology through 3D CT image analysis.

Brian Avants, James Gee, J. Gee, 2007, American journal of physical anthropology.

Continuous Curve Matching with Scale-Space Curvature and Extrema-Based Scale Selection

Brian B. Avants, James C. Gee, J. Gee, 2003, Scale-Space.

Robust rotations between anatomical curves

Brian B. Avants, James C. Gee, J. Gee, 2002, Proceedings IEEE International Symposium on Biomedical Imaging.

Geodesic Image Normalization in the Space of Diffeomorphisms

Brian B. Avants, J. C. Gee, C. L. Epstein, 2006 .

Using Region Trajectories to Construct an Accurate and Efficient Polyaffine Transform Model

Brian B. Avants, Yang Liu, James C. Gee, 2013, IPMI.

Geodesic Image Normalization and Temporal Parameterization in the Space of Diffeomorphisms

Brian B. Avants, James C. Gee, Charles L. Epstein, 2006, MIAR.

Cardiac Medial Modeling and Time-Course Heart Wall Thickness Analysis

Alejandro F. Frangi, Brian B. Avants, Paul A. Yushkevich, 2008, MICCAI.

Symmetric Geodesic Shape Averaging and Shape Interpolation

Brian B. Avants, James C. Gee, J. Gee, 2004, ECCV Workshops CVAMIA and MMBIA.

Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge

Dante De Nigris, Sascha E. A. Muenzing, Marleen de Bruijne, 2011, IEEE Transactions on Medical Imaging.

Measuring the electrical conductivity of the earth

B. Avants, George Ruppeiner, Dustin Soodak, 1999 .

The Shape Operator for Differential Analysis of Images

Brian B. Avants, James C. Gee, J. Gee, 2003, IPMI.

Decomposing cerebral blood flow MRI into functional and structural components: A non-local approach based on prediction

Danny J. J. Wang, Benjamin M. Kandel, J. Gee, 2015, NeuroImage.