H. Orland

发表

Effective Langevin equations for constrained stochastic processes

S. Majumdar, H. Orland, 2015, 1503.02639.

Generating transition paths by Langevin bridges.

H. Orland, 2011, The Journal of chemical physics.

Ab initio sampling of transition paths by conditioned Langevin dynamics.

P. Koehl, H. Orland, M. Delarue, 2017, The Journal of chemical physics.

Mean-field theory for optimization problems

H. Orland, 1985 .

Guided replication of random chain: a new Monte Carlo method

H. Orland, T. Garel, 1990 .

RNA folding and large N matrix theory

A. Zee, H. Orland, A. Zee, 2001, cond-mat/0106359.

Enumeration of RNA structures by matrix models.

Henri Orland, A Zee, Graziano Vernizzi, 2005, Physical review letters.

Quantum Many-Particle Systems

Henri Orland, John W. Negele, H. Orland, 1988 .

Replica field theory for composite media

M. Barthelemy, H. Orland, 1993 .

Topological classification of RNA structures.

A. Zee, H. Orland, G. Vernizzi, 2006, Journal of molecular biology.

Steric Effects in Electrolytes: A Modified Poisson-Boltzmann Equation

H. Orland, D. Andelman, I. Borukhov, 1997, cond-mat/9803258.

Comparison of a new Monte Carlo peptide conformational search procedure with high temperature molecular dynamics

Jeremy C. Smith, H. Orland, T. Garel, 1991 .

Stretched exponential relaxation in systems with random free energies

H. Orland, C. Dominicis, F. Lainée, 1985 .

Anharmonicity and self-similarity of the free energy landscape of protein G.

C Micheletti, H. Orland, C. Micheletti, 2006, Physical review letters.

Solvation of Ion Pairs: The Poisson-Langevin Model

P. Koehl, H. Orland, M. Delarue, 2009, 2009 International Conference on Signal Processing Systems.

Random Field Ising Model: Dimensional Reduction or Spin-Glass Phase?

H. Orland, T. Temesvari, C. Dominicis, 1995, cond-mat/9501069.

Nanoscale Organization of Block Copolymers at Surfaces: Comparison of Theory and Experiments

B. Sackler, H. Orland, D. Andelman, 2010 .

Statistical Physics Approach to the Optimal Transport Problem.

P. Koehl, H. Orland, M. Delarue, 2019, Physical review letters.

Dominant Folding Pathways of a Beta-Hairpin

H. Orland, P. Faccioli, A. Lonardi, 2009, 0912.0037.

Incorporating dipolar solvents with variable density in Poisson-Boltzmann electrostatics.

Patrice Koehl, Marc Delarue, Henri Orland, 2008, Biophysical journal.

Accelerated stochastic sampling of discrete statistical systems.

H. Nishimori, H. Orland, Z. Bertalan, 2010, Physical review. E, Statistical, nonlinear, and soft matter physics.

Test-charge theory for the electric double layer.

H. Orland, Y. Burak, D. Andelman, 2003, Physical review. E, Statistical, nonlinear, and soft matter physics.

Efficient Sampling of Knotting-Unknotting Pathways for Semiflexible Gaussian Chains

H. Orland, C. Micheletti, 2017, Polymers.

The elusive quest for RNA knots

H. Orland, N. Lehman, C. Micheletti, 2016, RNA biology.

Computing ion solvation free energies using the dipolar Poisson model.

P. Koehl, H. Orland, M. Delarue, 2009, The journal of physical chemistry. B.

Modified Poisson–Boltzmann equations for characterizing biomolecular solvation

P. Koehl, H. Orland, M. Delarue, 2014 .

Flory theory revisited

H. Orland, 1993, cond-mat/9307003.

Simple integral equation for the polymer brush

H. Orland, M. Schick, 1996 .

Supersymmetry and Nonequilibrium Work Relations

K. Mallick, H. Orland, M. Moshe, 2007, 0711.2059.

Adapting Poisson-Boltzmann to the self-consistent mean field theory: application to protein side-chain modeling.

P. Koehl, H. Orland, M. Delarue, 2011, The Journal of chemical physics.

Sampling constrained stochastic trajectories using Brownian bridges

P. Koehl, H. Orland, 2022, The Journal of Chemical Physics.

Numerical Encodings of Amino Acids in Multivariate Gaussian Modeling of Protein Multiple Sequence Alignments

P. Koehl, H. Orland, M. Delarue, 2018, Molecules.

Beyond Poisson-Boltzmann: Numerical Sampling of Charge Density Fluctuations.

H. Orland, M. Delarue, F. Poitevin, 2016, The journal of physical chemistry. B.

Checking for optimal solutions in some $NP$-complete problems

H. Orland, M. Bauer, 2005, cond-mat/0503634.

Sampling constrained stochastic trajectories using Brownian bridges.

P. Koehl, H. Orland, 2022, The Journal of chemical physics.

Are better conductors more rigid

Hawoong Jeong, H. Orland, Y. Eom, 2006, cond-mat/0605677.

An evaluation of the number of Hamiltonian paths

C. Itzykson, H. Orland, C. Itzykson, 1985 .

Mean-field theory of polymer melting

H. Orland, T. Garel, J. Bascle, 1992 .

On the remarkable spectrum of a non-Hermitian random matrix model

A. Zee, H. Orland, D. Holz, 2002, math-ph/0204015.

Formation and stability of secondary structures in globular proteins

H. Orland, T. Garel, J. Bascle, 1993 .

Exact critical behavior of two-dimensional wetting problems with quenched disorder

H. Orland, J. Luck, T. Nieuwenhuizen, 1988 .

One and two-component hard-core plasmas

H. Orland, R. Netz, 1999, cond-mat/9902220.

Replica field theory for composite media

M. Barthelemy, H. Orland, 1993 .

Adsorption of Polymers on a Fluctuating Surface

H. Orland, M. Kardar, T. Garel, 1994, cond-mat/9412038.

Field Theory of Polymers: Escaping the Sign Problem

H. Orland, G. Fredrickson, 2003, cond-mat/0310486.

Conductance of concentrated electrolytes: Multivalency and the Wien effect.

H. Orland, D. Andelman, Yael Avni, 2022, The Journal of chemical physics.

Steric Effects in Electrolytes: A Modified Poisson-Boltzmann Equation

H. Orland, D. Andelman, I. Borukhov, 1997, cond-mat/9803258.

Adsorption of large ions from an electrolyte solution: a modified Poisson–Boltzmann equation

H. Orland, D. Andelman, I. Borukhov, 1999, cond-mat/9911482.

Random hydrophilic-hydrophobic copolymers

H. Orland, T. Garel, L. Leibler, 1994, cond-mat/9406050.

Accelerated Sampling of Boltzmann Distributions

H. Orland, 2008, 0812.2587.

A path integral approach to effective non-linear medium

M. Barthelemy, H. Orland, 1998, cond-mat/9806302.

Conductivity of Concentrated Electrolytes.

H. Orland, D. Andelman, Yael Avni, 2021, Physical review letters.

Field theory for charged fluids and colloids

H. Orland, R. Netz, 1998, cond-mat/9807009.

Ionic profiles close to dielectric discontinuities: Specific ion-surface interactions.

H. Orland, D. Andelman, Tomer Markovich, 2016, The Journal of chemical physics.

Dielectric constant of ionic solutions: Combined effects of correlations and excluded volume.

H. Orland, D. Andelman, Ram M. Adar, 2018, The Journal of chemical physics.

Replica derivation of Sompolinsky free energy functional for mean field spin glasses

H. Orland, M. Gabay, C. Dominicis, 1981 .

Dipolar Poisson-Boltzmann approach to ionic solutions: a mean field and loop expansion analysis.

H. Orland, D. Andelman, A. Levy, 2013, The Journal of chemical physics.

Dielectric constant of ionic solutions: a field-theory approach.

H. Orland, D. Andelman, A. Levy, 2012, Physical review letters.

Dipolar Poisson-Boltzmann equation: ions and dipoles close to charge interfaces.

David Andelman, Henri Orland, H. Orland, 2007, Physical review letters.

DYNAMICS OF THE SWELLING OR COLLAPSE OF A HOMOPOLYMER

H. Orland, E. Pitard, 1996, cond-mat/9610113.

Knotted vs. Unknotted Proteins: Evidence of Knot-Promoting Loops

Raffaello Potestio, Cristian Micheletti, Henri Orland, 2010, PLoS Comput. Biol..

Self consistent field theory of virus assembly

H. Orland, R. Zandi, Siyu Li, 2017, Journal of physics. Condensed matter : an Institute of Physics journal.

Coherent states formulation of polymer field theory.

Michael C. Villet, H. Orland, G. Fredrickson, 2012, The Journal of chemical physics.

Self-Consistent Field Study of Polyelectrolyte Brushes

H. Orland, Yasuo Y. Suzuki, H. Seki, 2007 .

Random heteropolymers in layered fluids

E. Shakhnovich, H. Orland, T. Garel, 1990 .

Theory of critical micelle concentration for solutions of block copolymers

J. Wheeler, H. Orland, L. Leibler, 1983 .

A field-theoretic approach to non-equilibrium work identities

K. Mallick, H. Orland, M. Moshe, 2010, 1009.4800.

Scaling Laws of Polyelectrolyte Adsorption

H. Orland, D. Andelman, I. Borukhov, 1997, cond-mat/9706090.

Chiral discrimination in solutions and in Langmuir monolayers

H. Orland, D. Andelman, 1993 .

A Polymer Model for the Quantitative Reconstruction of Chromosome Architecture from HiC and GAM Data.

Henri Orland, François Képès, H. Orland, 2018, Biophysical journal.

Phase Behavior of DNA in the Presence of DNA-Binding Proteins.

H. Orland, F. Képès, G. Le Treut, 2015, Biophysical journal.

Phase behaviour of DNA in presence of DNA-binding proteins

H. Orland, F. Képès, G. L. Treut, 2015 .

Secondary structure formation of homopolymeric single-stranded nucleic acids including force and loop entropy: Implications for DNA hybridization

H. Orland, Institut de Physique Theorique, T. Einert, 2011, The European physical journal. E, Soft matter.

Mechanism of thermal renaturation and hybridization of nucleic acids: Kramers' process and universality in Watson-Crick base pairing.

H. Orland, J. Sikorav, A. Braslau, 2008, The journal of physical chemistry. B.

Impact of loop statistics on the thermodynamics of RNA folding.

Henri Orland, Paul M. Näger, H. Orland, 2008, Physical review letters.

O ct 2 00 0 Bridge Hopping on Conducting Polymers in Solution

H. Orland, D. Hone, 2008 .

Topology of pseudoknotted homopolymers.

Paolo Ribeca, A. Zee, H. Orland, 2005, Physical review. E, Statistical, nonlinear, and soft matter physics.

Generalized Poland-Scheraga model for supercoiled DNA

H. Orland, E. Yeramian, T. Garel, 2004, q-bio/0407036.

Generalized Poland–Scheraga model for DNA hybridization

Henri Orland, H. Orland, T. Garel, 2004, Biopolymers.

On the role of mismatches in DNA denaturation

H. Orland, T. Garel, 2003, cond-mat/0304080.

A simple model for DNA denaturation

H. Orland, T. Garel, C. Monthus, 2001, cond-mat/0101058.

Bridge hopping on conducting polymers in solution

H. Orland, D. Hone, 2000, cond-mat/0010115.

Polyelectrolyte Titration: Theory and Experiment

H. Orland, M. Cloître, L. Leibler, 2000, cond-mat/0005306.

EFFECT OF POLYELECTROLYTE ADSORPTION ON INTERCOLLOIDAL FORCES

H. Orland, D. Andelman, I. Borukhov, 1999 .

Phase diagram of magnetic polymers

H. Orland, T. Garel, E. Orlandini, 1999, cond-mat/9902147.

Random polyelectrolytes and polyampholytes in solution

H. Orland, D. Andelman, I. Borukhov, 1998, cond-mat/9804304.

The Effect of Polyelectrolyte Adsorption on Inter-Colloidal Forces

H. Orland, D. Andelman, I. Borukhov, 1998, cond-mat/9803324.

Gas of self-avoiding loops on the brickwork lattice

H. Orland, D. Foster, F. Eghbal, 1997, cond-mat/9712317.

Protein folding and heteropolymers

H. Orland, T. Garel, E. Pitard, 1997, cond-mat/9706125.

Polyelectrolyte Solutions between Charged Surfaces

H. Orland, D. Andelman, I. Borukhov, 1995 .

Flory theory revisited

H. Orland, 1993, cond-mat/9307003.

Statistical Mechanics of Secondary Structures in Proteins: Characterization of a molten globule—like state

H. Orland, T. Garel, S. Doniach, 1994 .

LA THEORIE

H. Orland, 1993 .

Localization and Folding of Random Chains

H. Orland, 1990 .

Fast computation of exact solutions of generic and degenerate assignment problems.

Patrice Koehl, Henri Orland, P. Koehl, 2021, Physical review. E.

Optimal transport at finite temperature.

Patrice Koehl, Marc Delarue, Henri Orland, 2019, Physical review. E.

General formalism for phase combination and phase refinement: a statistical thermodynamics approach in reciprocal space.

H. Orland, M. Delarue, 2000, Acta crystallographica. Section A, Foundations of crystallography.

Localization Transition of Random Chains at Interfaces

S. Leibler, D. Huse, H. Orland, 1989 .

Variational charge renormalization in charged systems

H. Orland, R. Netz, 2002, The European physical journal. E, Soft matter.

Scaling behavior of polyelectrolytes and polyampholytes: Simulation by an ensemble growth method

H. Orland, P. Higgs, 1991 .

Copolymer at a selective interface and two-dimensional wetting: a grand canonical approach

H. Orland, T. Garel, C. Monthus, 2000, cond-mat/0004141.

Mean-Field Model for Protein Folding

H. Orland, T. Garel, 1988 .

Numerical Simulation of Finite-Temperature Field Theory for Interacting Bosons.

H. Orland, G. Fredrickson, K. Delaney, 2020, Physical review letters.

Computational assembly of polymorphic amyloid fibrils reveals stable aggregates.

Patrice Koehl, Jérôme Waldispühl, Frédéric Poitevin, 2013, Biophysical journal.

Absence of knots in known RNA structures

Henri Orland, Cristian Micheletti, H. Orland, 2015, Proceedings of the National Academy of Sciences.

TT2NE: a novel algorithm to predict RNA secondary structures with pseudoknots

Henri Orland, Michaël Bon, H. Orland, 2010, Nucleic acids research.

White and weighted averages over solutions of Thouless Anderson Palmer equations for the Sherrington Kirkpatrick spin glass

Henri Orland, H. Orland, T. Garel, 1980 .

Statistical mechanics model of protein folding : short and long chains have different folding transitions

Henri Orland, H. Orland, T. Garel, 1989 .

Flexible conducting polymers: An analytic approach

H. Orland, D. Hone, 1998 .

Manning condensation in two dimensions.

H. Orland, Y. Burak, 2005, Physical review. E, Statistical, nonlinear, and soft matter physics.

Beyond Poisson-Boltzmann: Fluctuation effects and correlation functions

H. Orland, R. Netz, 1999, cond-mat/9902085.

Test-charge theory for the electric double layer.

H. Orland, Y. Burak, D. Andelman, 2003, Physical review. E, Statistical, nonlinear, and soft matter physics.

Beyond Poisson-Boltzmann: Fluctuation effects and correlation functions

H. Orland, R. Netz, 1999, cond-mat/9902085.

Beyond the Poisson-Boltzmann model: modeling biomolecule-water and water-water interactions.

Patrice Koehl, Marc Delarue, Henri Orland, 2009, Physical review letters.

Physics approach to the variable-mass optimal-transport problem.

P. Koehl, H. Orland, M. Delarue, 2021, Physical review. E.

Effect of Memory and Active Forces on Transition Path Time Distributions.

H. Orland, E. Carlon, T. Sakaue, 2018, The journal of physical chemistry. B.

Two-body collisions and time dependent Hartree-Fock theory

H. Orland, R. Schaeffer, 1979 .

Path integrals for the nuclear many-body problem

H. Orland, J. Blaizot, 1981 .

Single particle states in nuclei

H. Orland, R. Schaeffer, 1978 .

Tidal bore effect in heavy ion collisions

H. Orland, R. Schaeffer, 1976 .

Path integrals and time-dependent mean-field theories

H. Orland, J. Blaizot, 1980 .

Path integrals, boson expansions and the time dependent mean-field approximations

H. Orland, J. Blaizot, 1981 .

Parameterizing elastic network models to capture the dynamics of proteins

Patrice Koehl, Marc Delarue, Henri Orland, 2021, J. Comput. Chem..

Static and dynamic aspects of disorder lines

H. Orland, T. Garel, M. Schick, 1991 .

A Kinetic Model for Chaperonin Assisted Folding of Proteins

H. Orland, D. Thirumalai, 1997 .

Functional integral methods for quantum spin systems

S. Leibler, H. Orland, 1981 .

One-dimensional random Ising models

M. L. Mehta, M. Mehta, H. Orland, 1985 .

Energies of Parameter-Dependent Systems

H. Orland, 1979 .

RNA Base Pairing Determines the Conformations of RNA Inside Spherical Viruses.

H. Orland, R. Zandi, G. Erdemci-Tandogan, 2017, Physical review letters.

Polymer expansion of the quantum many-body problem

H. Orland, 1980 .

Boson representations for systems of fermions

H. Orland, J. Blaizot, 1980 .

Protein Folding, Anisotropic Collapse and Blue Phases

H. Orland, T. Garel, E. Pitard, 1997, cond-mat/9706101.

Partially folded states of proteins: characterization by X-ray scattering.

H. Orland, T. Garel, S. Doniach, 1995, Journal of molecular biology.

AquaSAXS: a web server for computation and fitting of SAXS profiles with non-uniformally hydrated atomic models

Sebastian Doniach, Patrice Koehl, Marc Delarue, 2011, Nucleic Acids Res..

Probing the binding affinity of amyloids to reduce toxicity of oligomers in diabetes

Jérôme Waldispühl, Mohamed Raef Smaoui, Henri Orland, 2015, Bioinform..

Prediction of RNA pseudoknots by Monte Carlo simulations

A. Zee, G. Vernizzi, H. Orland, 2004, q-bio/0405014.

Lower critical dimension of the random-field Ising model: a Monte Carlo study

David Andelman, Henri Orland, H. Orland, 1984 .

Tailoring Nanostructures Using Copolymer Nanoimprint Lithography

H. Orland, D. Andelman, N. Chaix, 2012, Advanced materials.

Organization of Block Copolymers using NanoImprint Lithography: Comparison of Theory and Experiments

H. Orland, P. Thébault, S. Landis, 2010, 1007.4733.

Stochastic dynamics and dominant protein folding pathways

H. Orland, P. Faccioli, F. Pederiva, 2008 .

Variational theory for a single polyelectrolyte chain

H. Orland, R. Netz, 1999 .

Molecular Kinetics in Condensed Phases: Theory, Simulation, and Analysis

H. Orland, R. Elber, D. Makarov, 2020 .

Dynamics of polymers: a mean-field theory.

H. Orland, G. Fredrickson, 2013, The Journal of chemical physics.

PDB_Hydro: incorporating dipolar solvents with variable density in the Poisson–Boltzmann treatment of macromolecule electrostatics

Patrice Koehl, Erik Lindahl, Marc Delarue, 2006, Nucleic Acids Res..

Analyzing the Geometry and Dynamics of Viral Structures: A Review of Computational Approaches Based on Alpha Shape Theory, Normal Mode Analysis, and Poisson–Boltzmann Theories

P. Koehl, H. Orland, M. Delarue, 2023, Viruses.

Protein Adsorption on Lipid Monolayers at their Coexistence Region

H. Orland, R. Netz, D. Andelman, 1996, cond-mat/9803262.

Thermal fluctuations in some random field models

É. Brézin, H. Orland, J. Villain, 1988 .

Generating stochastic trajectories with global dynamical constraints

Henri Orland, Benjamin De Bruyne, Satya N Majumdar, 2021, Journal of Statistical Mechanics: Theory and Experiment.

Simultaneous Identification of Multiple Binding Sites in Proteins: A Statistical Mechanics Approach.

P. Koehl, H. Orland, M. Delarue, 2021, The journal of physical chemistry. B.

Molecular Kinetics in Condensed Phases

H. Orland, R. Elber, D. Makarov, 2020 .

Dominant pathways in protein folding.

H. Orland, P. Faccioli, F. Pederiva, 2005, Physical review letters.

The role of the energy gap in protein folding dynamics

H. Orland, E. Pitard, 1998, cond-mat/9811252.

On the response of a two-level quantum system to a class of time-dependent quasiperiodic perturbations

H. Orland, U. Smilansky, J. Luck, 1988 .

Transition path time distributions.

H. Orland, E. Carlon, M. Laleman, 2017, The Journal of chemical physics.

Prediction of RNA pseudoknots by Monte Carlo simulations

A. Zee, H. Orland, G. Vernizzi, 2004, q-bio/0405014.

A Physicist's View on Partial 3D Shape Matching

P. Koehl, H. Orland, 2023, Algorithms.

Random matrix theory and ribonucleic acid (RNA) folding

H. Orland, G. Vernizzi, 2018 .

A static interpretation of the order-parameters in spin-glasses

H. Orland, 1983 .

Computing the Gromov-Wasserstein Distance between Two Surface Meshes Using Optimal Transport

P. Koehl, H. Orland, M. Delarue, 2023, Algorithms.

Phase diagram of a semiflexible polymer chain in a θ solvent: Application to protein folding

H. Orland, T. Garel, S. Doniach, 1995, cond-mat/9512058.

MISTRAL: a tool for energy-based multiple structural alignment of proteins

Cristian Micheletti, Henri Orland, H. Orland, 2009, Bioinform..

Fluctuations in the ensemble of reaction pathways.

H. Orland, P. Faccioli, G. Mazzola, 2010, The Journal of chemical physics.

Dominant reaction pathways in high-dimensional systems.

H. Orland, P. Faccioli, F. Pederiva, 2009, The Journal of chemical physics.

McGenus: a Monte Carlo algorithm to predict RNA secondary structures with pseudoknots

Henri Orland, Michaël Bon, Cristian Micheletti, 2012, Nucleic acids research.

Simulating stochastic dynamics using large time steps.

H. Orland, P. Faccioli, O. Corradini, 2009, Physical review. E, Statistical, nonlinear, and soft matter physics.

Conformational distribution of heptaalanine: Analysis using a new Monte Carlo chain growth method

J. C. Niel, Jeremy C. Smith, B. Velikson, 1992 .

Multicanonical Monte Carlo ensemble growth algorithm.

H. Orland, G. Vernizzi, M. Olvera de la Cruz, 2018, Physical review. E.

Classification and predictions of RNA pseudoknots based on topological invariants.

Henri Orland, A Zee, Graziano Vernizzi, 2016, Physical review. E.

Biasing a Monte Carlo chain growth method with Ramachandran's plot: Application to twenty‐L‐alanine

H. Orland, T. Garel, B. Velikson, 1993, Biopolymers.

Dominant folding pathways of a peptide chain from ab initio quantum-mechanical simulations.

H. Orland, P. Faccioli, G. Garberoglio, 2010, The Journal of chemical physics.

Chemical Sequence and Spatial Structure in Simple Models of Biopolymers

H. Orland, T. Garel, 1988 .